Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
BAIAP2L1	55971	genome.wustl.edu	37	7	97933530	97933530	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	97933530	97933530	G	A	SNP	BAIAP2L1	NM_018842	human	genbank	57_37b	-1	reviewed	missense	c.1400	p.S467F	0.971	NULL	HMMPfam_IMD,superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2	-	no_errors	
BARD1	580	genome.wustl.edu	37	2	215657118	215657118	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	215657118	215657118	C	T	SNP	BARD1	NM_000465	human	genbank	57_37b	-1	reviewed	silent	c.267	p.P89	1.000	superfamily_SSF57850	superfamily_SSF57850,HMMSmart_RING,PatternScan_ZF_RING_1,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMSmart_BRCT,superfamily_BRCT,HMMPfam_BRCT	-	no_errors	
BRIP1	83990	genome.wustl.edu	37	17	59821953	59821953	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	59821953	59821953	C	G	SNP	BRIP1	NM_032043	human	genbank	57_37b	-1	reviewed	splice_site	c.2098-1	e14-1	1.000	-	-	-	no_errors	
C1orf125	126859	genome.wustl.edu	37	1	179452320	179452320	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	179452320	179452320	T	G	SNP	C1orf125	NM_144696	human	genbank	57_37b	+1	validated	missense	c.2055	p.N685K	0.972	NULL	HMMPfam_Ax_dynein_light	-	no_errors	
C8orf12	83656	genome.wustl.edu	37	8	11292542	11292542	+	RNA	SNP	C	T	T	rs2280803	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	11292542	11292542	C	T	SNP	C8orf12	NR_026814	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.000	-	-	-		
CACNA2D4	93589	genome.wustl.edu	37	12	1949960	1949960	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	1949960	1949960	C	T	SNP	CACNA2D4	NM_172364	human	genbank	57_37b	-1	reviewed	silent	c.2496	p.V832	0.763	NULL	HMMPfam_VWA_N,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Cache_1	-	no_errors	
CCDC137	339230	genome.wustl.edu	37	17	79639550	79639550	+	Missense_Mutation	SNP	G	A	A	rs11546630	byCluster;byFrequency;by1000genomes	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79639550	79639550	G	A	SNP	CCDC137	NM_199287	human	genbank	57_37b	+1	validated	missense	c.686	p.R229Q	0.002	NULL	NULL	-		
CRELD2	79174	genome.wustl.edu	37	22	50313438	50313438	+	Silent	SNP	T	C	C	rs9616388	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50313438	50313438	T	C	SNP	CRELD2	NM_024324	human	genbank	57_37b	+1	validated	silent	c.273	p.N91	0.986	NULL	superfamily_Growth factor receptor domain,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_LAM_1,HMMSmart_SM00261,PatternScan_EGF_CA,HMMSmart_SM00179,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL	-		
CRIPAK	285464	genome.wustl.edu	37	4	1388379	1388379	+	Missense_Mutation	SNP	G	G	A	rs56109734	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	1388379	1388379	G	A	SNP	CRIPAK	NM_175918	human	genbank	57_37b	+1	validated	missense	c.80	p.C27Y	0.833	NULL	HMMSmart_PostSET	-		
CTSF	8722	genome.wustl.edu	37	11	66335548	66335548	+	Silent	SNP	A	A	G	rs1127894	byCluster;byFrequency;by1000genomes	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66335548	66335548	A	G	SNP	CTSF	NM_003793	human	genbank	57_37b	-1	reviewed	silent	c.219	p.G73	0.030	NULL	PatternScan_THIOL_PROTEASE_ASN,HMMPfam_Inhibitor_I29,superfamily_SSF54001,HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS	-		
CUL4B	8450	genome.wustl.edu	37	X	119694135	119694135	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	119694135	119694135	G	C	SNP	CUL4B	NM_003588	human	genbank	57_37b	-1	reviewed	missense	c.413	p.S138C	0.998	NULL	"superfamily_Cullin repeat,HMMPfam_Cullin,superfamily_Cullin homology domain,HMMSmart_SM00182,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Cullin_Nedd8,PatternScan_CULLIN_1"	-	no_errors	
DHTKD1	55526	genome.wustl.edu	37	10	12136161	12136161	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	12136161	12136161	C	T	SNP	DHTKD1	NM_018706	human	genbank	57_37b	+1	validated	missense	c.1249	p.R417C	1.000	superfamily_Thiamin diphosphate-binding fold (THDP-binding),HMMPfam_E1_dh	superfamily_Thiamin diphosphate-binding fold (THDP-binding),HMMPfam_E1_dh,HMMPfam_Transket_pyr	-	no_errors	
DIS3L	115752	genome.wustl.edu	37	15	66618592	66618592	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	66618592	66618592	G	A	SNP	DIS3L	NM_133375	human	genbank	57_37b	+1	validated	nonsense	c.1842	p.W614*	0.999	HMMPfam_RNB	HMMPfam_RNB,PatternScan_RIBONUCLEASE_II	-	no_errors	
DNA2	1763	genome.wustl.edu	37	10	70218891	70218891	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	70218891	70218891	G	A	SNP	DNA2	NM_001080449	human	genbank	57_37b	-1	provisional	missense	c.947	p.S316L	0.385	HMMPfam_Dna2	HMMPfam_Dna2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
DNAH1	25981	genome.wustl.edu	37	3	52391735	52391735	+	Silent	SNP	A	A	C	rs11714402	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52391735	52391735	A	C	SNP	DNAH1	NM_015512	human	genbank	57_37b	+1	validated	silent	c.3964	p.R1322	0.994	HMMPfam_DHC_N2	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-		
DNAH1	25981	genome.wustl.edu	37	3	52428988	52428988	+	Silent	SNP	C	C	A	rs11708581	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52428988	52428988	C	A	SNP	DNAH1	NM_015512	human	genbank	57_37b	+1	validated	silent	c.10881	p.V3627	0.992	HMMPfam_Dynein_heavy	HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-		
DNAH12	201625	genome.wustl.edu	37	3	57414071	57414071	+	Missense_Mutation	SNP	G	G	A	rs4681982	byCluster;byFrequency;by1000genomes	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	57414071	57414071	G	A	SNP	DNAH12	NM_178504	human	genbank	57_37b	-1	validated	missense	c.5288	p.T1763I	0.004	NULL	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-		
DSCAML1	57453	genome.wustl.edu	37	11	117342753	117342753	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	117342753	117342753	T	C	SNP	DSCAML1	NM_020693	human	genbank	57_37b	-1	provisional	splice_site	c.2966-2	e15-2	1.000	-	-	-	no_errors	
DSG4	147409	genome.wustl.edu	37	18	28972180	28972182	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	28972180	28972182	TCT	-	DEL	DSG4	NM_001134453	human	genbank	57_37b	+1	reviewed	in_frame_del	c.882_884	p.L295in_frame_del	1.000:0.999:0.987	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1	(deletion:cds_exon[28972118,28972303])	no_errors	
DYNC1H1	1778	genome.wustl.edu	37	14	102452147	102452147	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	102452147	102452147	A	G	SNP	DYNC1H1	NM_001376	human	genbank	57_37b	+1	reviewed	missense	c.1585	p.N529D	1.000	HMMPfam_DHC_N1	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
ENSG00000245549	0	genome.wustl.edu	37	1	16947092	16947092	+	RNA	SNP	G	G	A	rs384073	byCluster;by2Hit2Allele;byHapMap	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16947092	16947092	G	A	SNP	ENSG00000245549	ENST00000501442	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.669	-	-	-		
ERP29	10961	genome.wustl.edu	37	12	112460034	112460034	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	112460034	112460034	C	T	SNP	ERP29	NM_006817	human	genbank	57_37b	+1	reviewed	missense	c.364	p.R122W	0.997	HMMPfam_ERp29_N,superfamily_Thiordxn-like_fd	HMMPfam_ERp29_N,superfamily_Thiordxn-like_fd,superfamily_ERP29_C,HMMPfam_ERp29,PatternScan_ER_TARGET	-	no_errors	
FAM116B	414918	genome.wustl.edu	37	22	50754512	50754512	+	Missense_Mutation	SNP	C	C	T	rs11553143	byCluster;byFrequency;by1000genomes	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50754512	50754512	C	T	SNP	FAM116B	NM_001001794	human	genbank	57_37b	-1	validated	missense	c.644	p.R215H	0.458	HMMPfam_DUF1630	HMMPfam_DUF1630	-		
FAM71B	153745	genome.wustl.edu	37	5	156589516	156589516	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	156589516	156589516	C	T	SNP	FAM71B	NM_130899	human	genbank	57_37b	-1	validated	missense	c.1760	p.S587N	0.000	NULL	NULL	-	no_errors	
FFAR1	2864	genome.wustl.edu	37	19	35843060	35843060	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	35843060	35843060	C	T	SNP	FFAR1	NM_005303	human	genbank	57_37b	+1	reviewed	silent	c.606	p.Y202	0.967	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
FLJ43860	389690	genome.wustl.edu	37	8	142500345	142500345	+	Missense_Mutation	SNP	C	T	T	rs75295956	byCluster;byFrequency;by1000genomes	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	142500345	142500345	C	T	SNP	FLJ43860	NM_207414	human	genbank	57_37b	-1	validated	missense	c.569	p.S190N	0.999	NULL	superfamily_ARM repeat,HMMPfam_HEAT	-		
GATA2	2624	genome.wustl.edu	37	3	128204951	128204951	+	Missense_Mutation	SNP	C	T	T	rs2335052	byCluster;byFrequency;by1000genomes	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	128204951	128204951	C	T	SNP	GATA2	NM_001145661	human	genbank	57_37b	-1	reviewed	missense	c.490	p.A164T	0.515	NULL	superfamily_SSF57716,HMMSmart_ZnF_GATA,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-		
GPR52	9293	genome.wustl.edu	37	1	174417939	174417939	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	174417939	174417939	C	A	SNP	GPR52	NM_005684	human	genbank	57_37b	+1	validated	nonsense	c.690	p.C230*	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
GRIN3A	116443	genome.wustl.edu	37	9	104499857	104499857	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	104499857	104499857	C	T	SNP	GRIN3A	NM_133445	human	genbank	57_37b	-1	reviewed	silent	c.405	p.L135	1.000	superfamily_SSF53822	superfamily_SSF53822,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMSmart_PBPe,HMMPfam_Lig_chan	-	no_errors	
HLA-C	3107	genome.wustl.edu	37	6	31238880	31238880	+	Missense_Mutation	SNP	C	C	T	rs1050357	byCluster	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	31238880	31238880	C	T	SNP	HLA-C	NM_002117	human	genbank	57_37b	-1	reviewed	missense	c.589	p.E197K	0.999	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,HMMPfam_C1-set,HMMSmart_SM00407,HMMPfam_MHC_I_C,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin	-		
HPS4	89781	genome.wustl.edu	37	22	26860227	26860227	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	26860227	26860227	T	G	SNP	HPS4	NM_022081	human	genbank	57_37b	-1	reviewed	silent	c.1369	p.R457	0.001	NULL	NULL	-	no_errors	
HSD17B6	8630	genome.wustl.edu	37	12	57181033	57181033	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57181033	57181033	T	A	SNP	HSD17B6	NM_003725	human	genbank	57_37b	+1	reviewed	silent	c.861	p.A287	0.022	superfamily_NAD(P)-bd	superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT	-	no_errors	
KIAA1274	27143	genome.wustl.edu	37	10	72285804	72285804	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	72285804	72285804	G	A	SNP	KIAA1274	NM_014431	human	genbank	57_37b	+1	validated	missense	c.97	p.V33I	0.103	NULL	superfamily_SSF52799	-	no_errors	
KLHL7	55975	genome.wustl.edu	37	7	23163424	23163424	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	23163424	23163424	T	G	SNP	KLHL7	NM_001031710	human	genbank	57_37b	+1	reviewed	missense	c.149	p.V50G	1.000	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch	-	no_errors	
L1TD1	54596	genome.wustl.edu	37	1	62673037	62673037	+	Missense_Mutation	SNP	T	C	C	rs7542665	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	62673037	62673037	T	C	SNP	L1TD1	NM_019079	human	genbank	57_37b	+1	validated	missense	c.737	p.V246A	0.029	HMMPfam_Transposase_22	HMMPfam_Transposase_22	-		
LOC728211	728211	genome.wustl.edu	37	18	12076504	12076504	+	RNA	SNP	A	A	C	rs12966109	byCluster	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	12076504	12076504	A	C	SNP	LOC728211	XR_015403	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.953	-	-	-		
LRRC16B	90668	genome.wustl.edu	37	14	24528876	24528876	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24528876	24528876	T	G	SNP	LRRC16B	NM_138360	human	genbank	57_37b	+1	validated	silent	c.1803	p.T601	0.997	superfamily_RNI-like	superfamily_RNI-like,HMMSmart_SM00368	-	no_errors	
LRRN1	57633	genome.wustl.edu	37	3	3888104	3888104	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	3888104	3888104	A	C	SNP	LRRN1	NM_020873	human	genbank	57_37b	+1	validated	missense	c.1779	p.E593D	1.000	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	superfamily_SSF52058,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	-	no_errors	
LRTM2	654429	genome.wustl.edu	37	12	1943503	1943503	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	1943503	1943503	C	A	SNP	LRTM2	NM_001039029	human	genbank	57_37b	+1	validated	silent	c.729	p.P243	1.000	superfamily_L domain-like,HMMSmart_SM00082	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082	-	no_errors	
LRTM2	654429	genome.wustl.edu	37	12	1943594	1943594	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	1943594	1943594	C	T	SNP	LRTM2	NM_001039029	human	genbank	57_37b	+1	validated	missense	c.820	p.P274S	0.994	NULL	HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like	-	no_errors	
MAML1	9794	genome.wustl.edu	37	5	179195873	179195873	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	179195873	179195873	C	T	SNP	MAML1	NM_014757	human	genbank	57_37b	+1	reviewed	missense	c.1754	p.P585L	0.948	NULL	HMMPfam_MamL-1	-	no_errors	
MAP2K2	5605	genome.wustl.edu	37	19	4101062	4101062	+	Silent	SNP	G	G	T	rs11539507	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4101062	4101062	G	T	SNP	MAP2K2	NM_030662	human	genbank	57_37b	-1	reviewed	silent	c.660	p.I220	0.997	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-		
MBD6	114785	genome.wustl.edu	37	12	57918847	57918847	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57918847	57918847	A	G	SNP	MBD6	NM_052897	human	genbank	57_37b	+1	validated	missense	c.328	p.M110V	0.996	NULL	HMMPfam_MBD	-	no_errors	
MDN1	23195	genome.wustl.edu	37	6	90426511	90426511	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	90426511	90426511	C	G	SNP	MDN1	NM_014611	human	genbank	57_37b	-1	provisional	missense	c.6601	p.E2201Q	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_vWA-like,HMMSmart_SM00327	-	no_errors	
MUC16	94025	genome.wustl.edu	37	19	9048936	9048937	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9048936	9048937	AA	-	DEL	MUC16	NM_024690	human	genbank	57_37b	-1	validated	frame_shift_del	c.32695_32694	p.P10900fs	0.000:0.000	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	(deletion:cds_exon[9045564,9050243])	no_errors	
MYBL1	4603	genome.wustl.edu	37	8	67485600	67485600	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	67485600	67485600	C	T	SNP	MYBL1	NM_001080416	human	genbank	57_37b	-1	validated	missense	c.1612	p.G538R	1.000	HMMPfam_Cmyb_C	superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding,HMMPfam_Wos2,HMMPfam_Cmyb_C	-	no_errors	
NEB	4703	genome.wustl.edu	37	2	152375530	152375532	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	152375530	152375532	CTT	-	DEL	NEB	NM_004543	human	genbank	57_37b	-1	reviewed	in_frame_del	c.17541_17539	p.K5847in_frame_del	0.987:1.000:1.000	HMMSmart_SM00227	HMMSmart_SM00227,HMMPfam_Nebulin,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	(deletion:cds_exon[152375479,152375583])	no_errors	
NR4A3	8013	genome.wustl.edu	37	9	102609749	102609749	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	102609749	102609749	C	T	SNP	NR4A3	NM_173200	human	genbank	57_37b	+1	reviewed	silent	c.1518	p.F506	1.000	superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors	
NRXN1	9378	genome.wustl.edu	37	2	50850528	50850528	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	50850528	50850528	G	A	SNP	NRXN1	NM_001135659	human	genbank	57_37b	-1	reviewed	missense	c.1157	p.A386V	1.000	superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2	superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMSmart_EGF,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMSmart_4.1m	-	no_errors	
NSUN6	221078	genome.wustl.edu	37	10	18931451	18931451	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	18931451	18931451	G	A	SNP	NSUN6	NM_182543	human	genbank	57_37b	-1	validated	missense	c.265	p.H89Y	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_PUA domain-like,HMMPfam_PUA,HMMPfam_Nol1_Nop2_Fmu,PatternScan_NOL1_NOP2_SUN	-	no_errors	
NUP160	23279	genome.wustl.edu	37	11	47859145	47859146	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47859145	47859146	CT	-	DEL	NUP160	NM_015231	human	genbank	57_37b	-1	validated	frame_shift_del	c.779_778	p.S260fs	1.000:1.000	NULL	PatternScan_HIS_ACID_PHOSPHAT_1	(deletion:cds_exon[47859097,47859175])	no_errors	
PCNXL2	80003	genome.wustl.edu	37	1	233122127	233122127	+	Missense_Mutation	SNP	C	C	T	rs41309639	byCluster;byFrequency;by1000genomes	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	233122127	233122127	C	T	SNP	PCNXL2	NM_014801	human	genbank	57_37b	-1	provisional	missense	c.5951	p.R1984Q	1.000	NULL	PatternScan_DNAJ_1,HMMPfam_Pecanex_C	-		
PDS5B	23047	genome.wustl.edu	37	13	33275522	33275522	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	33275522	33275522	C	T	SNP	PDS5B	NM_015032	human	genbank	57_37b	+1	validated	silent	c.1803	p.I601	0.994	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_AT_hook	-	no_errors	
PEX6	5190	genome.wustl.edu	37	6	42932852	42932852	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42932852	42932852	C	T	SNP	PEX6	NM_000287	human	genbank	57_37b	-1	reviewed	missense	c.2627	p.R876Q	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA	-	no_errors	
PHF19	26147	genome.wustl.edu	37	9	123632045	123632045	+	Silent	SNP	A	A	G	rs1056567	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	123632045	123632045	A	G	SNP	PHF19	NM_001009936	human	genbank	57_37b	-1	validated	silent	c.543	p.S181	0.000	NULL	HMMSmart_TUDOR,superfamily_SSF63748,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1	-		
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1633	p.E545K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-		
PNLIP	5406	genome.wustl.edu	37	10	118315541	118315541	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	118315541	118315541	T	G	SNP	PNLIP	NM_000936	human	genbank	57_37b	+1	reviewed	missense	c.841	p.L281V	0.254	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases,PatternScan_LIPASE_SER,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308	-	no_errors	
PRDM1	639	genome.wustl.edu	37	6	106553776	106553776	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	106553776	106553776	G	A	SNP	PRDM1	NM_001198	human	genbank	57_37b	+1	reviewed	missense	c.1741	p.A581T	0.998	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199,PatternScan_AA_TRNA_LIGASE_I,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
PRLR	5618	genome.wustl.edu	37	5	35086314	35086314	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	35086314	35086314	C	T	SNP	PRLR	NM_000949	human	genbank	57_37b	-1	validated	missense	c.199	p.E67K	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_HEMATOPO_REC_L_F1	-	no_errors	
PTEN	5728	genome.wustl.edu	37	10	89720799	89720802	+	Frame_Shift_Del	DEL	TACT	TACT	-	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	TACT	TACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	89720799	89720802	TACT	-	DEL	PTEN	ENST00000371953	human	ensembl	57_37b	+1	known	frame_shift_del	c.950_953	p.T319fs	1.000:1.000:1.000:1.000	HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_DSPc,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	(deletion:cds_exon[89720651,89720875])	no_errors	
RBM27	54439	genome.wustl.edu	37	5	145641353	145641353	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	145641353	145641353	A	G	SNP	RBM27	NM_018989	human	genbank	57_37b	+1	validated	missense	c.2174	p.H725R	0.944	NULL	superfamily_SSF101233,HMMPfam_zf-CCCH,superfamily_SSF54928,HMMSmart_RRM	-	no_errors	
RBM5	10181	genome.wustl.edu	37	3	50154522	50154522	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	50154522	50154522	C	T	SNP	RBM5	NM_005778	human	genbank	57_37b	+1	provisional	nonsense	c.2110	p.R704*	0.996	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,HMMSmart_SM00443,HMMPfam_G-patch	-	no_errors	
RNF44	22838	genome.wustl.edu	37	5	175956177	175956177	+	Nonsense_Mutation	SNP	G	G	A	rs2241584	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	175956177	175956177	G	A	SNP	RNF44	ENST00000434253	human	ensembl	57_37b	-1	known	nonsense	c.415	p.Q139*	0.000	HMMSmart_RING	superfamily_SSF57850,HMMPfam_zf-C3HC4,HMMSmart_RING	-		
SALL2	6297	genome.wustl.edu	37	14	21991858	21991858	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	21991858	21991858	G	A	SNP	SALL2	NM_005407	human	genbank	57_37b	-1	validated	silent	c.2004	p.F668	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
SHKBP1	92799	genome.wustl.edu	37	19	41082868	41082868	+	Silent	SNP	T	T	C	rs16974365	byCluster;by1000genomes	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41082868	41082868	T	C	SNP	SHKBP1	NM_138392	human	genbank	57_37b	+1	validated	silent	c.63	p.I21	1.000	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_WD40 repeat-like,HMMSmart_SM00320,PatternScan_WD_REPEATS_1	-		
SLC24A3	57419	genome.wustl.edu	37	20	19560658	19560658	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	19560658	19560658	C	G	SNP	SLC24A3	NM_020689	human	genbank	57_37b	+1	validated	missense	c.363	p.F121L	1.000	NULL	HMMPfam_Na_Ca_ex	-	no_errors	
SNAPC4	6621	genome.wustl.edu	37	9	139275294	139275294	+	Missense_Mutation	SNP	G	G	C	rs3812571	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139275294	139275294	G	C	SNP	SNAPC4	NM_003086	human	genbank	57_37b	-1	validated	missense	c.2397	p.H799Q	0.999	NULL	HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding	-		
SNCAIP	9627	genome.wustl.edu	37	5	121758575	121758575	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	121758575	121758575	G	C	SNP	SNCAIP	NM_005460	human	genbank	57_37b	+1	reviewed	missense	c.143	p.S48T	0.984	NULL	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK	-	no_errors	
SNW1	22938	genome.wustl.edu	37	14	78205185	78205185	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	78205185	78205185	G	A	SNP	SNW1	NM_012245	human	genbank	57_37b	-1	reviewed	nonsense	c.469	p.Q157*	1.000	NULL	HMMPfam_SKIP_SNW	-	no_errors	
SSPN	8082	genome.wustl.edu	37	12	26383694	26383694	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	26383694	26383694	C	T	SNP	SSPN	NM_005086	human	genbank	57_37b	+1	reviewed	silent	c.417	p.A139	0.277	NULL	NULL	-	no_errors	
SSPO	23145	genome.wustl.edu	37	7	149511985	149511985	+	Missense_Mutation	SNP	A	A	G	rs10952230	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	149511985	149511985	A	G	SNP	SSPO	ENST00000378016	human	ensembl	57_37b	+1	known	missense	c.10535	p.N3512S	0.190	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_VWC,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_BPTI_KUNITZ_1,PatternScan_GLYCO_HORMONE_BETA_1,PatternScan_EGF_1,PatternScan_VWFC_1	-		
STAG3L1	54441	genome.wustl.edu	37	7	74991317	74991317	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	74991317	74991317	G	-	DEL	STAG3L1	NM_018991	human	genbank	57_37b	+1	validated	frame_shift_del	c.3	p.M1fs	0.943	NULL	superfamily_ARM repeat	(deletion:cds_exon[74991315,74991358])	no_errors	
STON1-GTF2A1L	286749	genome.wustl.edu	37	2	48809392	48809392	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	48809392	48809392	C	T	SNP	STON1-GTF2A1L	NM_172311	human	genbank	57_37b	+1	reviewed	silent	c.1620	p.Y540	0.988	superfamily_AP50,HMMPfam_Adap_comp_sub	superfamily_AP50,HMMPfam_Adap_comp_sub,superfamily_TFIIA_helical,HMMPfam_TFIIA,superfamily_TFIIA_betabarrel	-	no_errors	
TMEM125	128218	genome.wustl.edu	37	1	43738829	43738829	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	43738829	43738829	G	A	SNP	TMEM125	NM_144626	human	genbank	57_37b	+1	validated	missense	c.436	p.A146T	0.080	NULL	NULL	-	no_errors	
TPR	7175	genome.wustl.edu	37	1	186287865	186287865	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	186287865	186287865	C	T	SNP	TPR	NM_003292	human	genbank	57_37b	-1	reviewed	missense	c.6664	p.V2222M	0.995	NULL	superfamily_Prefoldin,HMMPfam_TPR_MLP1_2	-	no_errors	
TPSAB1	7177	genome.wustl.edu	37	16	1291188	1291188	+	Silent	SNP	C	C	T	rs62012906	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1291188	1291188	C	T	SNP	TPSAB1	NM_003294	human	genbank	57_37b	+1	reviewed	silent	c.96	p.V32	0.552	HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases	HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-		
TRIL	9865	genome.wustl.edu	37	7	28996944	28996944	+	Missense_Mutation	SNP	T	T	C	rs740250	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	28996944	28996944	T	C	SNP	TRIL	NM_014817	human	genbank	57_37b	-1	validated	missense	c.719	p.N240S	0.999	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT	-		
TSG101	7251	genome.wustl.edu	37	11	18531179	18531179	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	18531179	18531179	T	C	SNP	TSG101	NM_006292	human	genbank	57_37b	-1	reviewed	missense	c.391	p.M131V	1.000	superfamily_UBC-like,HMMPfam_UEV,HMMSmart_SM00212	superfamily_UBC-like,HMMPfam_UEV,HMMSmart_SM00212,HMMPfam_Vps23_core	-	no_errors	
TTYH2	94015	genome.wustl.edu	37	17	72248454	72248454	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72248454	72248454	G	T	SNP	TTYH2	NM_032646	human	genbank	57_37b	+1	reviewed	missense	c.1198	p.A400S	0.992	HMMPfam_Tweety	HMMPfam_Tweety	-	no_errors	
UCHL3	7347	genome.wustl.edu	37	13	76141383	76141383	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	76141383	76141383	A	G	SNP	UCHL3	NM_006002	human	genbank	57_37b	+1	provisional	missense	c.361	p.K121E	1.000	HMMPfam_Peptidase_C12,superfamily_Cysteine proteinases	HMMPfam_Peptidase_C12,superfamily_Cysteine proteinases,PatternScan_UCH_1	-	no_errors	
USP44	84101	genome.wustl.edu	37	12	95926958	95926958	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	95926958	95926958	C	T	SNP	USP44	NM_001042403	human	genbank	57_37b	-1	validated	missense	c.1075	p.G359R	1.000	superfamily_Cysteine proteinases,HMMPfam_UCH	HMMSmart_SM00290,HMMPfam_zf-UBP,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors	
USP51	158880	genome.wustl.edu	37	X	55513981	55513981	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	55513981	55513981	G	C	SNP	USP51	NM_201286	human	genbank	57_37b	-1	validated	missense	c.1392	p.H464Q	1.000	superfamily_SSF54001,HMMPfam_UCH	HMMPfam_zf-UBP,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors	
WHSC1	7468	genome.wustl.edu	37	4	1920229	1920229	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	1920229	1920229	A	G	SNP	WHSC1	NM_001042424	human	genbank	57_37b	+1	reviewed	missense	c.1289	p.D430G	0.278	NULL	superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293,superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,superfamily_SET domain,HMMSmart_SM00570,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors	
ZFHX4	79776	genome.wustl.edu	37	8	77620135	77620135	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A06R-01A-11D-A015-09	TCGA-A8-A06R-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	77620135	77620135	A	G	SNP	ZFHX4	NM_024721	human	genbank	57_37b	+1	validated	missense	c.2867	p.K956R	1.000	NULL	HMMSmart_SM00355,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
