Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCB9	23457	genome.wustl.edu	37	12	123424624	123424624	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	123424624	123424624	G	C	SNP	ABCB9	ENST00000442833	human	ensembl	57_37b	-1	known	missense	c.1777	p.P593A	0.007	NULL	superfamily_ABC_TM_1,HMMPfam_ABC_membrane,superfamily_SSF52540	-	no_errors	
ANKK1	255239	genome.wustl.edu	37	11	113269854	113269855	+	Frame_Shift_Ins	INS	-	-	CA	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	113269854	113269855	-	CA	INS	ANKK1	NM_178510	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1163_1164	p.D389fs	0.130:0.247	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ST,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors	
C13orf3	221150	genome.wustl.edu	37	13	21742333	21742333	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	21742333	21742333	C	A	SNP	C13orf3	ENST00000314759	human	ensembl	57_37b	-1	known	silent	c.537	p.V179	0.000	NULL	NULL	-	no_errors	
CACNA1G	8913	genome.wustl.edu	37	17	48669336	48669336	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48669336	48669336	T	G	SNP	CACNA1G	NM_018896	human	genbank	57_37b	+1	validated	missense	c.2793	p.N931K	0.993	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors	
CCDC57	284001	genome.wustl.edu	37	17	80159705	80159705	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	80159705	80159705	G	-	DEL	CCDC57	NM_198082	human	genbank	57_37b	-1	validated	frame_shift_del	c.116	p.T39fs	0.002	NULL	NULL	(deletion:cds_exon[80159414,80159820])	no_errors	
CD22	933	genome.wustl.edu	37	19	35835800	35835800	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	35835800	35835800	G	T	SNP	CD22	NM_001771	human	genbank	57_37b	+1	validated	missense	c.2104	p.A702S	0.524	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig	-	no_errors	
CLSTN2	64084	genome.wustl.edu	37	3	140122491	140122491	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	140122491	140122491	A	T	SNP	CLSTN2	NM_022131	human	genbank	57_37b	+1	validated	missense	c.253	p.I85F	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors	
CREB3L1	90993	genome.wustl.edu	37	11	46341932	46341932	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	46341932	46341932	C	T	SNP	CREB3L1	NM_052854	human	genbank	57_37b	+1	validated	missense	c.1376	p.A459V	0.003	NULL	superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_1,HMMSmart_SM00338,PatternScan_BZIP_BASIC	-	no_errors	
DDR1	780	genome.wustl.edu	37	6	30864625	30864625	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	30864625	30864625	G	C	SNP	DDR1	NM_013994	human	genbank	57_37b	+1	reviewed	missense	c.1852	p.E618Q	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	-	no_errors	
EFCAB5	374786	genome.wustl.edu	37	17	28419935	28419935	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	28419935	28419935	T	G	SNP	EFCAB5	NM_198529	human	genbank	57_37b	+1	validated	silent	c.4302	p.L1434	0.163	NULL	superfamily_EF-hand,PatternScan_EF_HAND_1	-	no_errors	
ENSG00000247966	0	genome.wustl.edu	37	20	48699460	48699460	+	RNA	SNP	A	A	C	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	48699460	48699460	A	C	SNP	ENSG00000247966	ENST00000499325	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.824	-	-	-	no_errors	
FAM134C	162427	genome.wustl.edu	37	17	40733591	40733591	+	RNA	DEL	A	A	-	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40733591	40733591	A	-	DEL	FAM134C	NR_026697	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.998	-	-	(deletion:rna[40731526,40734288])	no_errors	
GALNT11	63917	genome.wustl.edu	37	7	151800318	151800318	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151800318	151800318	C	T	SNP	GALNT11	NM_022087	human	genbank	57_37b	+1	validated	missense	c.541	p.H181Y	0.285	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,HMMSmart_SM00458,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin	-	no_errors	
HNRNPU	3192	genome.wustl.edu	37	1	245027315	245027315	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	245027315	245027315	G	A	SNP	HNRNPU	NM_031844	human	genbank	57_37b	-1	reviewed	silent	c.295	p.L99	0.994	NULL	superfamily_SAP domain,HMMPfam_SAP,HMMSmart_SM00513,HMMSmart_SM00449,HMMPfam_SPRY,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
ISLR2	57611	genome.wustl.edu	37	15	74425335	74425335	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	74425335	74425335	G	-	DEL	ISLR2	NM_001130136	human	genbank	57_37b	+1	validated	frame_shift_del	c.240	p.W81fs	1.000	superfamily_SSF52058	HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG	(deletion:cds_exon[74425096,74427333])	no_errors	
LOC139431	139431	genome.wustl.edu	37	X	34165401	34165401	+	Missense_Mutation	SNP	C	C	G	rs5928433	byCluster;by1000genomes	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	34165401	34165401	C	G	SNP	LOC139431	XM_002343801	human	genbank	57_37b	+1	model	missense	c.377	p.P126R	0.056	superfamily_Ferritin-like,HMMPfam_Ferritin	superfamily_Ferritin-like,HMMPfam_Ferritin,PatternScan_FERRITIN_2	-		
MEFV	4210	genome.wustl.edu	37	16	3293331	3293331	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	3293331	3293331	C	A	SNP	MEFV	NM_000243	human	genbank	57_37b	-1	reviewed	missense	c.2156	p.G719V	1.000	HMMPfam_SPRY,HMMSmart_SM00449	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors	
MUM1L1	139221	genome.wustl.edu	37	X	105449533	105449535	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	105449533	105449535	TCT	-	DEL	MUM1L1	ENST00000337685	human	ensembl	57_37b	+1	known	in_frame_del	c.108_110	p.L37in_frame_del	0.001:0.047:0.086	NULL	superfamily_SSF63748	(deletion:cds_exon[105449426,105451516])	no_errors	
NUP210	23225	genome.wustl.edu	37	3	13364912	13364912	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	13364912	13364912	C	T	SNP	NUP210	NM_024923	human	genbank	57_37b	-1	reviewed	silent	c.4665	p.Q1555	0.944	NULL	superfamily_Invasin/intimin cell-adhesion fragments,HMMPfam_Big_2,HMMSmart_SM00635	-	no_errors	
PCDHB10	56126	genome.wustl.edu	37	5	140574447	140574447	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140574447	140574447	G	A	SNP	PCDHB10	NM_018930	human	genbank	57_37b	+1	reviewed	silent	c.2322	p.S774	0.000	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA	-	no_errors	
PSG6	5675	genome.wustl.edu	37	19	43414783	43414783	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	43414783	43414783	G	A	SNP	PSG6	NM_002782	human	genbank	57_37b	-1	provisional	missense	c.655	p.R219W	0.000	superfamily_SSF48726	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2	-	no_errors	
PTPN12	5782	genome.wustl.edu	37	7	77210798	77210798	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	77210798	77210798	A	T	SNP	PTPN12	NM_002835	human	genbank	57_37b	+1	reviewed	missense	c.263	p.Y88F	1.000	superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase	superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
SLC1A6	6511	genome.wustl.edu	37	19	15061145	15061145	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15061145	15061145	G	A	SNP	SLC1A6	NM_005071	human	genbank	57_37b	-1	provisional	silent	c.1557	p.I519	0.965	HMMPfam_SDF	HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1,PatternScan_NA_DICARBOXYL_SYMP_2	-	no_errors	
TBC1D10B	26000	genome.wustl.edu	37	16	30380863	30380863	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	30380863	30380863	T	G	SNP	TBC1D10B	NM_015527	human	genbank	57_37b	-1	validated	silent	c.642	p.S214	0.001	NULL	superfamily_Ypt/Rab-GAP domain of gyp1p,HMMSmart_SM00164,HMMPfam_TBC,PatternScan_ILVD_EDD_1	-	no_errors	
TEX264	51368	genome.wustl.edu	37	3	51737809	51737809	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	51737809	51737809	C	T	SNP	TEX264	NM_001129884	human	genbank	57_37b	+1	validated	missense	c.719	p.A240V	0.921	NULL	superfamily_Probable bacterial effector-binding domain	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7576863	7576863	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7576863	7576863	A	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.983	p.F328fs	1.000	HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7576853,7576926])	no_errors	
TPRG1	285386	genome.wustl.edu	37	3	188925280	188925280	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	188925280	188925280	C	T	SNP	TPRG1	NM_198485	human	genbank	57_37b	+1	validated	missense	c.107	p.P36L	0.001	NULL	NULL	-	no_errors	
TULP4	56995	genome.wustl.edu	37	6	158924160	158924160	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	158924160	158924160	G	C	SNP	TULP4	NM_020245	human	genbank	57_37b	+1	validated	silent	c.3465	p.L1155	0.965	NULL	HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,superfamily_TNF-like,HMMPfam_SOCS_box,superfamily_Transcriptional factor tubby C-terminal domain,HMMPfam_Tub	-	no_errors	
TXNL1	9352	genome.wustl.edu	37	18	54291576	54291576	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	54291576	54291576	C	T	SNP	TXNL1	NM_004786	human	genbank	57_37b	-1	validated	silent	c.312	p.K104	0.998	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin	superfamily_Thiordxn-like_fd,PatternScan_THIOREDOXIN_1,HMMPfam_Thioredoxin,HMMPfam_DUF1000	-	no_errors	
WDR51B	282809	genome.wustl.edu	37	12	89818991	89818991	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	89818991	89818991	C	A	SNP	WDR51B	NM_172240	human	genbank	57_37b	-1	provisional	missense	c.1279	p.A427S	0.529	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
ZNF649	65251	genome.wustl.edu	37	19	52400227	52400227	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07U-01A-11W-A050-09	TCGA-A8-A07U-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52400227	52400227	G	A	SNP	ZNF649	NM_023074	human	genbank	57_37b	-1	provisional	missense	c.20	p.S7L	0.002	superfamily_Krueppel-associated_box	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
