Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ATF6B	1388	genome.wustl.edu	37	6	32088603	32088603	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32088603	32088603	T	C	SNP	ATF6B	NM_004381	human	genbank	57_37b	-1	reviewed	silent	c.777	p.R259	0.824	NULL	HMMPfam_bZIP_1,HMMSmart_SM00338,PatternScan_BZIP_BASIC	-	no_errors	
AZI1	22994	genome.wustl.edu	37	17	79182778	79182778	+	Silent	SNP	T	T	C	rs62075318	byCluster;by1000genomes	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79182778	79182778	T	C	SNP	AZI1	NM_014984	human	genbank	57_37b	-1	validated	silent	c.222	p.R74	0.397	NULL	NULL	-		
DFFB	1677	genome.wustl.edu	37	1	3782540	3782540	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	3782540	3782540	G	A	SNP	DFFB	NM_004402	human	genbank	57_37b	+1	reviewed	missense	c.406	p.A136T	0.015	superfamily_His-Me finger endonucleases,HMMPfam_DFF40	superfamily_CAD  PB1 domains,HMMPfam_CIDE-N,HMMSmart_SM00266,superfamily_His-Me finger endonucleases,HMMPfam_DFF40	-	no_errors	
ENSG00000244974	0	genome.wustl.edu	37	3	122252308	122252308	+	RNA	SNP	G	G	A	rs28719935	byCluster;byFrequency;by1000genomes	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	122252308	122252308	G	A	SNP	ENSG00000244974	ENST00000501924	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
ENSG00000245029	0	genome.wustl.edu	37	1	16889014	16889014	+	RNA	SNP	C	C	A	rs79526275	byCluster	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16889014	16889014	C	A	SNP	ENSG00000245029	ENST00000500210	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
IGHMBP2	3508	genome.wustl.edu	37	11	68701948	68701948	+	Silent	SNP	C	T	T	rs11228413	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	68701948	68701948	C	T	SNP	IGHMBP2	NM_002180	human	genbank	57_37b	+1	reviewed	silent	c.1554	p.V518	0.255	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMSmart_SM00382,HMMSmart_SM00393,superfamily_R3H domain,HMMPfam_R3H,HMMSmart_SM00154	-		
LOC646214	646214	genome.wustl.edu	37	15	21935922	21935922	+	RNA	SNP	G	G	A	rs4983758	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	21935922	21935922	G	A	SNP	LOC646214	NR_027053	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.995	-	-	-		
LOC653071	653071	genome.wustl.edu	37	4	68063	68063	+	RNA	SNP	G	G	A	rs6827719	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	68063	68063	G	A	SNP	LOC653071	XR_078735	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.011	-	-	-		
LYSMD3	116068	genome.wustl.edu	37	5	89815283	89815284	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	89815283	89815284	CT	-	DEL	LYSMD3	NM_198273	human	genbank	57_37b	-1	validated	frame_shift_del	c.274_273	p.R91fs	1.000:0.998	HMMSmart_SM00257,HMMPfam_LysM	HMMSmart_SM00257,HMMPfam_LysM	(deletion:cds_exon[89814636,89815301])	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56177874	56177875	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56177874	56177875	AG	-	DEL	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	frame_shift_del	c.2847_2848	p.E950fs	0.928:1.000	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[56177397,56178693])	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56177875	56177875	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56177875	56177875	G	C	SNP	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	missense	c.2848	p.E950Q	1.000	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
NQO1	1728	genome.wustl.edu	37	16	69744912	69744912	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	69744912	69744912	G	C	SNP	NQO1	NM_000903	human	genbank	57_37b	-1	reviewed	missense	c.792	p.I264M	0.996	superfamily_Flavoproteins	HMMPfam_Flavodoxin_2,superfamily_Flavoproteins	-	no_errors	
PLXNC1	10154	genome.wustl.edu	37	12	94620410	94620410	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	94620410	94620410	C	T	SNP	PLXNC1	NM_005761	human	genbank	57_37b	+1	provisional	missense	c.1820	p.A607V	0.886	HMMPfam_PSI,HMMSmart_PSI	superfamily_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,HMMPfam_TIG,HMMSmart_IPT,HMMPfam_Plexin_cytopl,superfamily_Rho_GAP	-	no_errors	
POLR1B	84172	genome.wustl.edu	37	2	113333168	113333168	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	113333168	113333168	C	T	SNP	POLR1B	NM_019014	human	genbank	57_37b	+1	validated	silent	c.3270	p.A1090	1.000	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_7	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_1,HMMPfam_RNA_pol_Rpb2_2,HMMPfam_RNA_pol_Rpb2_3,HMMPfam_RNA_pol_Rpa2_4,HMMPfam_RNA_pol_Rpb2_5,HMMPfam_RNA_pol_Rpb2_6,PatternScan_RNA_POL_BETA,HMMPfam_RNA_pol_Rpb2_7	-	no_errors	
RIN1	9610	genome.wustl.edu	37	11	66102769	66102769	+	Silent	SNP	A	C	C	rs7950463	byCluster;byFrequency;by1000genomes	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66102769	66102769	A	C	SNP	RIN1	ENST00000434553	human	ensembl	57_37b	-1	known	silent	c.105	p.T35	0.012	NULL	superfamily_VPS9 domain (Pfam 02204),HMMSmart_SM00167,HMMPfam_VPS9,HMMPfam_RA,HMMSmart_SM00314	-		
SBF1	6305	genome.wustl.edu	37	22	50899119	50899119	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50899119	50899119	T	-	DEL	SBF1	NM_002972	human	genbank	57_37b	-1	validated	frame_shift_del	c.2990	p.E997fs	1.000	superfamily_PH domain-like	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMPfam_PH,HMMSmart_SM00233	(deletion:cds_exon[50898963,50899141])	no_errors	
SFRS17A	8227	genome.wustl.edu	37	X	1719897	1719897	+	Missense_Mutation	SNP	C	C	G	rs28661622	byCluster	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	1719897	1719897	C	G	SNP	SFRS17A	NM_005088	human	genbank	57_37b	+1	validated	missense	c.1498	p.P500A	0.000	NULL	NULL	-		
SH3TC1	54436	genome.wustl.edu	37	4	8242514	8242514	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	8242514	8242514	G	A	SNP	SH3TC1	NM_018986	human	genbank	57_37b	+1	validated	silent	c.3843	p.T1281	0.071	superfamily_TPR-like	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors	
SLC1A6	6511	genome.wustl.edu	37	19	15083693	15083693	+	Silent	SNP	C	C	A	rs3746295	byCluster;byFrequency;by1000genomes	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15083693	15083693	C	A	SNP	SLC1A6	NM_005071	human	genbank	57_37b	-1	provisional	silent	c.30	p.L10	1.000	NULL	HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1,PatternScan_NA_DICARBOXYL_SYMP_2	-		
SLC41A1	254428	genome.wustl.edu	37	1	205764571	205764571	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	205764571	205764571	G	A	SNP	SLC41A1	NM_173854	human	genbank	57_37b	-1	validated	missense	c.1108	p.R370C	1.000	HMMPfam_MgtE	HMMPfam_MgtE	-	no_errors	
SLC6A11	6538	genome.wustl.edu	37	3	10967723	10967723	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	10967723	10967723	C	T	SNP	SLC6A11	NM_014229	human	genbank	57_37b	+1	provisional	missense	c.1154	p.A385V	1.000	HMMPfam_SNF	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors	
TARBP2	6895	genome.wustl.edu	37	12	53899836	53899837	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53899836	53899837	TG	-	DEL	TARBP2	NM_134323	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1005_1006	p.C337fs	0.050:1.000	superfamily_dsRNA-binding domain-like,HMMSmart_SM00358	superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358	(deletion:cds_exon[53899775,53899932])	no_errors	
TMCC1	23023	genome.wustl.edu	37	3	129546835	129546835	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	129546835	129546835	C	A	SNP	TMCC1	NM_001017395	human	genbank	57_37b	-1	validated	missense	c.387	p.E129D	0.588	NULL	HMMPfam_Tmemb_cc2	-	no_errors	
TTLL12	23170	genome.wustl.edu	37	22	43576904	43576904	+	Silent	SNP	G	G	A	rs2071723	byCluster;byFrequency;by1000genomes	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	43576904	43576904	G	A	SNP	TTLL12	NM_015140	human	genbank	57_37b	-1	provisional	silent	c.390	p.H130	0.041	NULL	HMMPfam_TTL	-		
UBASH3A	53347	genome.wustl.edu	37	21	43833311	43833311	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	43833311	43833311	C	T	SNP	UBASH3A	NM_018961	human	genbank	57_37b	+1	validated	missense	c.533	p.T178M	0.107	NULL	superfamily_UBA-like,HMMPfam_UBA,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_Phosphoglycerate mutase-like,HMMPfam_PGAM	-	no_errors	
UBIAD1	29914	genome.wustl.edu	37	1	11333899	11333899	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	11333899	11333899	A	C	SNP	UBIAD1	NM_013319	human	genbank	57_37b	+1	reviewed	missense	c.311	p.Y104S	1.000	HMMPfam_UbiA	HMMPfam_UbiA	-	no_errors	
UBR4	23352	genome.wustl.edu	37	1	19426948	19426948	+	Silent	SNP	C	C	T	rs111323489	unknown	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	19426948	19426948	C	T	SNP	UBR4	NM_020765	human	genbank	57_37b	-1	validated	silent	c.13143	p.P4381	0.078	superfamily_ARM repeat	superfamily_ARM repeat,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-UBR,HMMSmart_SM00396,PatternScan_ASP_GLU_RACEMASE_1	-		
WDR36	134430	genome.wustl.edu	37	5	110462515	110462515	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A8-A086-01A-11W-A019-09	TCGA-A8-A086-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	110462515	110462515	C	A	SNP	WDR36	NM_139281	human	genbank	57_37b	+1	reviewed	silent	c.2790	p.T930	0.998	HMMPfam_Utp21	superfamily_Amine_DH_B_like,HMMSmart_WD40,HMMPfam_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_Utp21	-	no_errors	
