Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCC5	10057	genome.wustl.edu	37	3	183685546	183685546	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	183685546	183685546	C	T	SNP	ABCC5	NM_005688	human	genbank	57_37b	-1	reviewed	silent	c.1770	p.L590	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ALOXE3	59344	genome.wustl.edu	37	17	8012603	8012603	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	8012603	8012603	A	-	DEL	ALOXE3	NM_021628	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1451	p.F484fs	1.000	superfamily_Lipoxygenase,HMMPfam_Lipoxygenase	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase,superfamily_Lipoxygenase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_1,PatternScan_LIPOXYGENASE_2	(deletion:cds_exon[8012492,8012661])	no_errors	
ATP1A4	480	genome.wustl.edu	37	1	160144375	160144375	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160144375	160144375	G	A	SNP	ATP1A4	NM_144699	human	genbank	57_37b	+1	reviewed	missense	c.2149	p.V717I	1.000	superfamily_Calcium ATPase transmembrane domain M,superfamily_HAD-like,HMMPfam_Hydrolase	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors	
BIN1	274	genome.wustl.edu	37	2	127827627	127827627	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	127827627	127827627	C	-	DEL	BIN1	NM_139343	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.355	p.V119fs	1.000	HMMSmart_SM00721,HMMPfam_BAR	HMMSmart_SM00721,HMMPfam_BAR,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	(deletion:cds_exon[127827571,127827666])	no_errors	
C11orf1	64776	genome.wustl.edu	37	11	111753281	111753281	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	111753281	111753281	G	A	SNP	C11orf1	NM_022761	human	genbank	57_37b	+1	validated	missense	c.235	p.D79N	0.960	HMMPfam_DUF1143	HMMPfam_DUF1143	-	no_errors	
C14orf25	319089	genome.wustl.edu	37	14	38293013	38293023	+	Frame_Shift_Del	DEL	TTTCTGGATGC	TTTCTGGATGC	-	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	TTTCTGGATGC	TTTCTGGATGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	38293013	38293023	TTTCTGGATGC	-	DEL	C14orf25	XM_002343299	human	genbank	57_37b	+1	model	frame_shift_del	c.4009_4019	p.F1337fs	0.103:0.040:0.039:0.095:0.980:0.999:1.000:1.000:0.998:1.000:0.992	superfamily_TPR-like,HMMSmart_SM00028	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	(deletion:cds_exon[38292952,38293162])	no_errors	
C2CD2	25966	genome.wustl.edu	37	21	43321826	43321826	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	43321826	43321826	C	G	SNP	C2CD2	NM_015500	human	genbank	57_37b	-1	validated	missense	c.1465	p.A489P	1.000	NULL	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors	
C6orf97	80129	genome.wustl.edu	37	6	151859360	151859360	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	151859360	151859360	G	C	SNP	C6orf97	NM_025059	human	genbank	57_37b	+1	validated	missense	c.367	p.E123Q	0.566	NULL	superfamily_Prefoldin	-	no_errors	
ENSG00000247966	0	genome.wustl.edu	37	20	48699253	48699253	+	RNA	SNP	T	T	A	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	48699253	48699253	T	A	SNP	ENSG00000247966	ENST00000499325	human	ensembl	57_37b	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	
FAM116A	201627	genome.wustl.edu	37	3	57616502	57616502	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	57616502	57616502	A	G	SNP	FAM116A	NM_152678	human	genbank	57_37b	-1	validated	missense	c.1457	p.L486P	1.000	HMMPfam_DUF1630	HMMPfam_DUF1630	-	no_errors	
FAM154A	158297	genome.wustl.edu	37	9	18928791	18928791	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	18928791	18928791	C	A	SNP	FAM154A	NM_153707	human	genbank	57_37b	-1	predicted	missense	c.684	p.R228S	0.877	NULL	NULL	-	no_errors	
FBN1	2200	genome.wustl.edu	37	15	48719825	48719825	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	48719825	48719825	C	T	SNP	FBN1	ENST00000389087	human	ensembl	57_37b	-1	known	missense	c.2909	p.R970K	0.999	NULL	PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,superfamily_TB module/8-cys domain,HMMPfam_TB,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
FILIP1L	11259	genome.wustl.edu	37	3	99569408	99569408	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	99569408	99569408	T	A	SNP	FILIP1L	NM_182909	human	genbank	57_37b	-1	validated	missense	c.1112	p.E371V	1.000	HMMPfam_CortBP2,superfamily_Prefoldin	HMMPfam_CortBP2,superfamily_Prefoldin	-	no_errors	
GPC5	2262	genome.wustl.edu	37	13	92408591	92408591	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	92408591	92408591	A	C	SNP	GPC5	NM_004466	human	genbank	57_37b	+1	reviewed	silent	c.1197	p.G399	0.900	HMMPfam_Glypican	HMMPfam_Glypican,PatternScan_GLYPICAN	-	no_errors	
GUCY1A2	2977	genome.wustl.edu	37	11	106558322	106558322	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	106558322	106558322	C	A	SNP	GUCY1A2	NM_000855	human	genbank	57_37b	-1	validated	missense	c.2152	p.V718F	1.000	NULL	HMMPfam_HNOB,superfamily_H-NOX domain,HMMPfam_HNOBA,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors	
HECW2	57520	genome.wustl.edu	37	2	197081790	197081790	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	197081790	197081790	C	T	SNP	HECW2	NM_020760	human	genbank	57_37b	-1	provisional	missense	c.4436	p.R1479Q	1.000	superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors	
HEPH	9843	genome.wustl.edu	37	X	65392232	65392232	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	65392232	65392232	G	A	SNP	HEPH	NM_138737	human	genbank	57_37b	+1	reviewed	missense	c.212	p.R71Q	0.983	superfamily_Cupredoxins	superfamily_Cupredoxins,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase_2,PatternScan_MULTICOPPER_OXIDASE2	-	no_errors	
HIST1H2AA	221613	genome.wustl.edu	37	6	25726475	25726475	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	25726475	25726475	A	G	SNP	HIST1H2AA	NM_170745	human	genbank	57_37b	-1	reviewed	missense	c.281	p.L94P	1.000	superfamily_Histone-fold,HMMSmart_H2A	superfamily_Histone-fold,HMMSmart_H2A,HMMPfam_Histone,PatternScan_HISTONE_H2A	-	no_errors	
IFT88	8100	genome.wustl.edu	37	13	21172876	21172876	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	21172876	21172876	G	A	SNP	IFT88	NM_175605	human	genbank	57_37b	+1	reviewed	silent	c.708	p.K236	1.000	HMMSmart_SM00028,superfamily_TPR-like	HMMSmart_SM00028,superfamily_TPR-like,HMMSmart_SM00671,HMMPfam_TPR_1	-	no_errors	
KBTBD8	84541	genome.wustl.edu	37	3	67053690	67053690	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	67053690	67053690	C	T	SNP	KBTBD8	NM_032505	human	genbank	57_37b	+1	validated	missense	c.221	p.S74L	1.000	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors	
KCNH2	3757	genome.wustl.edu	37	7	150648151	150648151	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150648151	150648151	G	A	SNP	KCNH2	NM_000238	human	genbank	57_37b	-1	reviewed	missense	c.2003	p.S668L	1.000	superfamily_Voltage-gated potassium channels,superfamily_cAMP-binding domain-like	superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS,HMMSmart_SM00086,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	-	no_errors	
LOC100131193	0	genome.wustl.edu	37	9	139699271	139699271	+	RNA	DEL	A	A	-	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139699271	139699271	A	-	DEL	LOC100131193	NR_024580	human	genbank	57_37b	-1	predicted	rna	NULL	NULL	0.003	-	-	(deletion:rna[139698379,139700036])	no_errors	
LYSMD3	116068	genome.wustl.edu	37	5	89820875	89820875	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	89820875	89820875	T	C	SNP	LYSMD3	NM_198273	human	genbank	57_37b	-1	validated	missense	c.232	p.I78V	0.998	HMMSmart_SM00257,HMMPfam_LysM	HMMSmart_SM00257,HMMPfam_LysM	-	no_errors	
MAGI3	260425	genome.wustl.edu	37	1	114191882	114191882	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	114191882	114191882	G	A	SNP	MAGI3	NM_001142782	human	genbank	57_37b	+1	validated	missense	c.2179	p.V727I	1.000	superfamily_PDZ,HMMPfam_PDZ	superfamily_PDZ,HMMSmart_PDZ,HMMSmart_GuKc,superfamily_SSF52540,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,HMMPfam_PDZ,PatternScan_GLY_RADICAL_1	-	no_errors	
MTUS2	0	genome.wustl.edu	37	13	29600553	29600553	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	29600553	29600553	C	A	SNP	MTUS2	NM_001033602	human	genbank	57_37b	+1	validated	missense	c.1748	p.P583H	0.141	NULL	NULL	-	no_errors	
MYO9B	4650	genome.wustl.edu	37	19	17313052	17313052	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17313052	17313052	C	-	DEL	MYO9B	NM_004145	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.4776	p.Q1593fs	1.000	NULL	HMMPfam_RA,HMMSmart_RA,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	(deletion:cds_exon[17312939,17313112])	no_errors	
NEK9	91754	genome.wustl.edu	37	14	75584015	75584015	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	75584015	75584015	T	C	SNP	NEK9	NM_033116	human	genbank	57_37b	-1	validated	silent	c.645	p.P215	0.991	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	PatternScan_RCC1_1,PatternScan_RCC1_2,PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,superfamily_RCC1/BLIP-II,HMMPfam_RCC1	-	no_errors	
NFATC1	4772	genome.wustl.edu	37	18	77210990	77210990	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	77210990	77210990	C	T	SNP	NFATC1	NM_172387	human	genbank	57_37b	+1	reviewed	silent	c.1587	p.S529	0.682	superfamily_p53-like transcription factors,HMMPfam_RHD	superfamily_p53-like transcription factors,HMMPfam_RHD,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG	-	no_errors	
NHLRC2	374354	genome.wustl.edu	37	10	115661613	115661613	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	115661613	115661613	A	T	SNP	NHLRC2	NM_198514	human	genbank	57_37b	+1	provisional	missense	c.1328	p.D443V	1.000	superfamily_NHL repeat	superfamily_Thioredoxin-like,superfamily_NHL repeat,HMMPfam_NHL	-	no_errors	
PCDH15	65217	genome.wustl.edu	37	10	55782835	55782835	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	55782835	55782835	G	T	SNP	PCDH15	NM_001142763	human	genbank	57_37b	-1	reviewed	silent	c.2358	p.V786	0.084	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like,HMMPfam_Cadherin	-	no_errors	
PCDHAC2	56134	genome.wustl.edu	37	5	140346876	140346876	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140346876	140346876	C	T	SNP	PCDHAC2	NM_018899	human	genbank	57_37b	+1	reviewed	silent	c.525	p.P175	0.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	HMMSmart_SM00112,superfamily_Cadherin-like,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
RG9MTD2	93587	genome.wustl.edu	37	4	100479258	100479258	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	100479258	100479258	C	T	SNP	RG9MTD2	NM_001134665	human	genbank	57_37b	-1	validated	missense	c.296	p.S99N	0.946	NULL	HMMPfam_tRNA_m1G_MT	-	no_errors	
RYR1	6261	genome.wustl.edu	37	19	38976819	38976819	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38976819	38976819	C	G	SNP	RYR1	NM_000540	human	genbank	57_37b	+1	reviewed	missense	c.5524	p.L1842V	1.000	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors	
SAGE1	55511	genome.wustl.edu	37	X	134991157	134991157	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	134991157	134991157	G	A	SNP	SAGE1	NM_018666	human	genbank	57_37b	+1	reviewed	missense	c.1576	p.D526N	0.007	NULL	NULL	-	no_errors	
SCN10A	6336	genome.wustl.edu	37	3	38739525	38739525	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	38739525	38739525	G	A	SNP	SCN10A	NM_006514	human	genbank	57_37b	-1	validated	missense	c.5186	p.T1729M	0.996	superfamily_SSF81324	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc	-	no_errors	
SCN2A	6326	genome.wustl.edu	37	2	166152440	166152440	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	166152440	166152440	G	A	SNP	SCN2A	NM_001040142	human	genbank	57_37b	+1	reviewed	missense	c.107	p.R36K	1.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_SM00015,HMMPfam_IQ	-	no_errors	
SLC25A39	51629	genome.wustl.edu	37	17	42397996	42397996	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42397996	42397996	T	-	DEL	SLC25A39	NM_001143780	human	genbank	57_37b	-1	validated	frame_shift_del	c.795	p.T267fs	0.997	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	(deletion:cds_exon[42397990,42398099])	no_errors	
SPTA1	6708	genome.wustl.edu	37	1	158636110	158636110	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158636110	158636110	C	T	SNP	SPTA1	NM_003126	human	genbank	57_37b	-1	reviewed	missense	c.2216	p.R739H	0.995	HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_EF-hand,HMMPfam_efhand_Ca_insen	-	no_errors	
TNFRSF21	27242	genome.wustl.edu	37	6	47202423	47202423	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	47202423	47202423	C	A	SNP	TNFRSF21	NM_014452	human	genbank	57_37b	-1	reviewed	missense	c.1721	p.G574V	1.000	NULL	superfamily_SSF57586,HMMSmart_TNFR,PatternScan_TNFR_NGFR_1,HMMSmart_DEATH,superfamily_DEATH_like,HMMPfam_Death	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578442	7578442	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578442	7578442	T	C	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.488	p.Y163C	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
USPL1	10208	genome.wustl.edu	37	13	31195310	31195310	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	31195310	31195310	G	A	SNP	USPL1	NM_005800	human	genbank	57_37b	+1	validated	silent	c.33	p.L11	1.000	NULL	NULL	-	no_errors	
WDR45L	56270	genome.wustl.edu	37	17	80585138	80585140	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	80585138	80585140	TCT	-	DEL	WDR45L	NM_019613	human	genbank	57_37b	-1	reviewed	in_frame_del	c.274_272	p.K91in_frame_del	1.000:1.000:1.000	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMSmart_SM00320	(deletion:cds_exon[80585080,80585167])	no_errors	
WDR81	124997	genome.wustl.edu	37	17	1640793	1640793	+	Silent	SNP	C	C	T	rs8077638	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	1640793	1640793	C	T	SNP	WDR81	ENST00000409644	human	ensembl	57_37b	+1	known	silent	c.5640	p.S1880	0.978	superfamily_WD40 repeat-like	superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,PatternScan_FBPASE,HMMSmart_SM00320,HMMPfam_WD40	-		
ZFPL1	7542	genome.wustl.edu	37	11	64855582	64855582	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08I-01A-11W-A019-09	TCGA-A8-A08I-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64855582	64855582	C	T	SNP	ZFPL1	NM_006782	human	genbank	57_37b	+1	validated	missense	c.929	p.S310F	1.000	NULL	PatternScan_ZF_RING_1,HMMSmart_RING	-	no_errors	
