Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCA8	10351	genome.wustl.edu	37	17	66872768	66872768	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	66872768	66872768	C	A	SNP	ABCA8	NM_007168	human	genbank	57_37b	-1	reviewed	splice_site	c.4155+1	e31+1	1.000	-	-	-	no_errors	
ACACB	32	genome.wustl.edu	37	12	109637223	109637223	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	109637223	109637223	G	T	SNP	ACACB	NM_001093	human	genbank	57_37b	+1	reviewed	missense	c.2644	p.G882C	1.000	NULL	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp domain,superfamily_Glutathione synthetase ATP-binding domain-like,HMMPfam_CPSase_L_D2,PatternScan_CPSASE_1,PatternScan_CPSASE_2,superfamily_Rudiment single hybrid motif,HMMPfam_Biotin_carb_C,superfamily_Single hybrid motif,HMMPfam_Biotin_lipoyl,HMMPfam_ACC_central,superfamily_ClpP/crotonase,HMMPfam_Carboxyl_trans	-	no_errors	
ARMCX5	64860	genome.wustl.edu	37	X	101858458	101858458	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	101858458	101858458	C	A	SNP	ARMCX5	NM_022838	human	genbank	57_37b	+1	validated	missense	c.1389	p.H463Q	0.175	HMMPfam_DUF634,superfamily_ARM repeat	PatternScan_CPSASE_2,HMMPfam_DUF634,superfamily_ARM repeat	-	no_errors	
B9D2	80776	genome.wustl.edu	37	19	41863814	41863814	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41863814	41863814	T	C	SNP	B9D2	NM_030578	human	genbank	57_37b	-1	reviewed	missense	c.202	p.K68E	1.000	HMMPfam_B9	HMMPfam_B9	-	no_errors	
CLASP1	23332	genome.wustl.edu	37	2	122122750	122122750	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	122122750	122122750	G	A	SNP	CLASP1	NM_015282	human	genbank	57_37b	-1	validated	missense	c.3997	p.R1333W	0.929	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
CLCN6	1185	genome.wustl.edu	37	1	11888625	11888625	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	11888625	11888625	C	G	SNP	CLCN6	NM_001286	human	genbank	57_37b	+1	reviewed	missense	c.1065	p.N355K	1.000	superfamily_Clc chloride channel,HMMPfam_Voltage_CLC	superfamily_Clc chloride channel,HMMPfam_Voltage_CLC,superfamily_CBS-domain,HMMPfam_CBS,HMMSmart_SM00116	-	no_errors	
CORO7	79585	genome.wustl.edu	37	16	4445327	4445327	+	Missense_Mutation	SNP	C	C	T	rs3747579	byCluster;byFrequency;by1000genomes	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	4445327	4445327	C	T	SNP	CORO7	NM_024535	human	genbank	57_37b	-1	validated	missense	c.578	p.R193Q	0.957	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,HMMPfam_DUF1900,PatternScan_WD_REPEATS_1	-		
EDEM1	9695	genome.wustl.edu	37	3	5252828	5252828	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	5252828	5252828	A	G	SNP	EDEM1	NM_014674	human	genbank	57_37b	+1	validated	missense	c.1607	p.H536R	1.000	superfamily_Seven-hairpin glycosidases,HMMPfam_Glyco_hydro_47	superfamily_Seven-hairpin glycosidases,HMMPfam_Glyco_hydro_47	-	no_errors	
ENSG00000245753	0	genome.wustl.edu	37	16	60083455	60083455	+	RNA	SNP	A	C	C	rs28877	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	60083455	60083455	A	C	SNP	ENSG00000245753	ENST00000500445	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ERN2	10595	genome.wustl.edu	37	16	23713958	23713958	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	23713958	23713958	C	T	SNP	ERN2	NM_033266	human	genbank	57_37b	-1	validated	missense	c.1064	p.G355E	1.000	NULL	superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564,HMMPfam_PQQ,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Ribonuc_2-5A,HMMSmart_SM00580	-	no_errors	
GATA3	2625	genome.wustl.edu	37	10	8115926	8115927	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8115926	8115927	-	C	INS	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1275_1276	p.S426fs	0.639:0.969	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors	
GTF2IRD2B	389524	genome.wustl.edu	37	7	74554778	74554779	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	74554778	74554779	-	T	INS	GTF2IRD2B	NM_001003795	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.892_893	p.T299fs	0.000:0.000	NULL	HMMPfam_GTF2I	-	no_errors	
KBTBD10	10324	genome.wustl.edu	37	2	170367168	170367168	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	170367168	170367168	G	A	SNP	KBTBD10	NM_006063	human	genbank	57_37b	+1	validated	missense	c.880	p.D294N	1.000	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,PatternScan_MGMT,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors	
LBP	3929	genome.wustl.edu	37	20	36993284	36993284	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	36993284	36993284	A	G	SNP	LBP	NM_004139	human	genbank	57_37b	+1	reviewed	missense	c.799	p.M267V	0.114	HMMPfam_LBP_BPI_CETP_C,superfamily_Bactericidal permeability-increasing protein BPI	superfamily_Bactericidal permeability-increasing protein BPI,PatternScan_LBP_BPI_CETP,HMMSmart_SM00328,HMMPfam_LBP_BPI_CETP,HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329	-	no_errors	
LDB2	9079	genome.wustl.edu	37	4	16597474	16597474	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	16597474	16597474	C	T	SNP	LDB2	NM_001290	human	genbank	57_37b	-1	validated	missense	c.260	p.R87H	1.000	HMMPfam_LIM_bind	HMMPfam_LIM_bind	-	no_errors	
MGAT5B	146664	genome.wustl.edu	37	17	74921129	74921129	+	Silent	SNP	C	C	T	rs34056052	by1000genomes	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	74921129	74921129	C	T	SNP	MGAT5B	NM_198955	human	genbank	57_37b	+1	validated	silent	c.1140	p.H380	0.942	NULL	NULL	-		
MUC3A	4584	genome.wustl.edu	37	7	100552250	100552250	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100552250	100552250	C	T	SNP	MUC3A	XM_001725354	human	genbank	57_37b	+1	model	missense	c.2831	p.S944F	0.042	NULL	superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00181,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors	
NLGN2	57555	genome.wustl.edu	37	17	7318874	7318874	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7318874	7318874	C	A	SNP	NLGN2	NM_020795	human	genbank	57_37b	+1	reviewed	missense	c.1082	p.P361H	1.000	HMMPfam_COesterase,superfamily_SSF53474	HMMPfam_COesterase,superfamily_SSF53474,PatternScan_CARBOXYLESTERASE_B_2	-	no_errors	
NME7	29922	genome.wustl.edu	37	1	169272390	169272390	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	169272390	169272390	A	C	SNP	NME7	NM_013330	human	genbank	57_37b	-1	validated	missense	c.433	p.F145V	0.994	superfamily_Nucleoside diphosphate kinases,HMMSmart_SM00562,HMMPfam_NDK	HMMSmart_SM00676,superfamily_Nucleoside diphosphate kinases,HMMSmart_SM00562,HMMPfam_NDK	-	no_errors	
NRXN1	9378	genome.wustl.edu	37	2	51254901	51254901	+	Silent	SNP	G	A	A	rs1045874	byCluster;byFrequency;by1000genomes	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	51254901	51254901	G	A	SNP	NRXN1	NM_001135659	human	genbank	57_37b	-1	reviewed	silent	c.511	p.L171	0.973	superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2	superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMSmart_EGF,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMSmart_4.1m	-		
PAPPA	5069	genome.wustl.edu	37	9	119139902	119139902	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	119139902	119139902	G	T	SNP	PAPPA	NM_002581	human	genbank	57_37b	+1	reviewed	silent	c.4653	p.L1551	0.981	superfamily_SSF55486,HMMSmart_NL,HMMPfam_Notch	superfamily_ConA_like_lec_gl,HMMSmart_LamGL,superfamily_SSF55486,HMMPfam_Notch,HMMSmart_NL,PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M43,superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	-	no_errors	
PHACTR4	65979	genome.wustl.edu	37	1	28802626	28802626	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	28802626	28802626	G	A	SNP	PHACTR4	NM_023923	human	genbank	57_37b	+1	reviewed	missense	c.1459	p.D487N	1.000	NULL	HMMSmart_RPEL,HMMPfam_RPEL	-	no_errors	
RASGRP4	115727	genome.wustl.edu	37	19	38911748	38911748	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38911748	38911748	G	A	SNP	RASGRP4	NM_170604	human	genbank	57_37b	-1	reviewed	missense	c.301	p.R101C	0.999	superfamily_Ras GEF,HMMPfam_RasGEF_N	superfamily_Ras GEF,HMMPfam_RasGEF_N,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1	-	no_errors	
S1PR4	8698	genome.wustl.edu	37	19	3179623	3179623	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3179623	3179623	C	T	SNP	S1PR4	NM_003775	human	genbank	57_37b	+1	reviewed	missense	c.833	p.S278F	0.989	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
SLC12A9	56996	genome.wustl.edu	37	7	100459398	100459398	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100459398	100459398	C	A	SNP	SLC12A9	NM_020246	human	genbank	57_37b	+1	validated	missense	c.1576	p.H526N	0.999	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors	
SLC16A5	9121	genome.wustl.edu	37	17	73100132	73100132	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	73100132	73100132	A	C	SNP	SLC16A5	NM_004695	human	genbank	57_37b	+1	provisional	silent	c.1221	p.S407	0.042	superfamily_MFS_gen_substrate_transporter	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	no_errors	
THAP9	79725	genome.wustl.edu	37	4	83826044	83826045	+	In_Frame_Ins	INS	-	-	GCT	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	83826044	83826045	-	GCT	INS	THAP9	NM_024672	human	genbank	57_37b	+1	validated	in_frame_ins	c.236_237	p.81in_frame_insL	1.000:0.997	HMMPfam_THAP,HMMSmart_DM3	HMMPfam_THAP,HMMSmart_DM3	-	no_errors	
THSD7A	221981	genome.wustl.edu	37	7	11675946	11675946	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	11675946	11675946	C	G	SNP	THSD7A	NM_015204	human	genbank	57_37b	-1	validated	missense	c.833	p.G278A	0.475	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	-	no_errors	
ZC3H13	23091	genome.wustl.edu	37	13	46544025	46544025	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	46544025	46544025	C	T	SNP	ZC3H13	NM_015070	human	genbank	57_37b	-1	validated	missense	c.2654	p.R885K	1.000	NULL	superfamily_SSF90229,HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH	-	no_errors	
ZNF658	26149	genome.wustl.edu	37	9	40773310	40773310	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08J-01A-11W-A019-09	TCGA-A8-A08J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	40773310	40773310	C	T	SNP	ZNF658	NM_033160	human	genbank	57_37b	-1	validated	silent	c.1965	p.E655	1.000	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
