Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAM19	8728	genome.wustl.edu	37	5	156907994	156907994	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	156907994	156907994	G	C	SNP	ADAM19	NM_033274	human	genbank	57_37b	-1	reviewed	nonsense	c.2720	p.S907*	0.022	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2,PatternScan_EGF_2"	-	no_errors	
ADAMTS20	80070	genome.wustl.edu	37	12	43826141	43826141	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	43826141	43826141	G	A	SNP	ADAMTS20	NM_025003	human	genbank	57_37b	-1	validated	missense	c.3062	p.S1021F	1.000	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_GON"	-	no_errors	
AIM1	202	genome.wustl.edu	37	6	106967193	106967193	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	106967193	106967193	A	G	SNP	AIM1	NM_001624	human	genbank	57_37b	+1	validated	missense	c.886	p.T296A	0.000	NULL	superfamily_G_crystallin_SF,HMMSmart_XTALbg,HMMPfam_Crystall,superfamily_RicinB_like,HMMSmart_RICIN,HMMPfam_Ricin_B_lectin	-	no_errors	
AKNA	80709	genome.wustl.edu	37	9	117120303	117120303	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	117120303	117120303	G	A	SNP	AKNA	NM_030767	human	genbank	57_37b	-1	validated	silent	c.2637	p.S879	0.000	NULL	NULL	-	no_errors	
ALG12	79087	genome.wustl.edu	37	22	50301476	50301476	+	Missense_Mutation	SNP	T	T	C	rs8135963	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50301476	50301476	T	C	SNP	ALG12	ENST00000486602	human	ensembl	57_37b	-1	known	missense	c.91	p.T31A	0.000	NULL	NULL	-		
ALG8	79053	genome.wustl.edu	37	11	77820538	77820538	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	77820538	77820538	G	A	SNP	ALG8	NM_024079	human	genbank	57_37b	-1	reviewed	missense	c.988	p.P330S	0.999	HMMPfam_Alg6_Alg8	HMMPfam_Alg6_Alg8	-	no_errors	
ANGEL2	90806	genome.wustl.edu	37	1	213180387	213180387	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	213180387	213180387	G	A	SNP	ANGEL2	ENST00000310246	human	ensembl	57_37b	-1	known	silent	c.726	p.I242	0.018	NULL	superfamily_DNase I-like,HMMPfam_Exo_endo_phos	-	no_errors	
ANKRD17	26057	genome.wustl.edu	37	4	74043217	74043217	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	74043217	74043217	C	T	SNP	ANKRD17	NM_032217	human	genbank	57_37b	-1	reviewed	missense	c.427	p.E143K	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_MutS_V,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1	-	no_errors	
ARHGAP29	9411	genome.wustl.edu	37	1	94643587	94643587	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	94643587	94643587	G	A	SNP	ARHGAP29	NM_004815	human	genbank	57_37b	-1	validated	missense	c.2617	p.R873C	0.066	superfamily_GTPase activation domain GAP,HMMSmart_SM00324	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
ATP5A1	498	genome.wustl.edu	37	18	43667040	43667040	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	43667040	43667040	T	G	SNP	ATP5A1	NM_001001937	human	genbank	57_37b	-1	reviewed	silent	c.1110	p.I370	0.959	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ATP-synt_ab	superfamily_N-terminal domain of alpha and beta subunits of F1 ATP synthase,HMMPfam_ATP-synt_ab_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ATP-synt_ab,PatternScan_ATPASE_ALPHA_BETA,superfamily_C-terminal domain of alpha and beta subunits of F1 ATP synthase,HMMPfam_ATP-synt_ab_C	-	no_errors	
ATP6V0B	533	genome.wustl.edu	37	1	44442306	44442306	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	44442306	44442306	C	A	SNP	ATP6V0B	NM_004047	human	genbank	57_37b	+1	reviewed	missense	c.323	p.A108E	1.000	superfamily_F1F0 ATP synthase subunit C,HMMPfam_ATP-synt_C	superfamily_F1F0 ATP synthase subunit C,HMMPfam_ATP-synt_C	-	no_errors	
B3GALT4	8705	genome.wustl.edu	37	6	33245209	33245209	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	33245209	33245209	C	A	SNP	B3GALT4	NM_003782	human	genbank	57_37b	+1	reviewed	missense	c.13	p.L5I	0.131	NULL	HMMPfam_Galactosyl_T,PatternScan_PARATHYROID	-	no_errors	
BCOR	54880	genome.wustl.edu	37	X	39932241	39932241	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	39932241	39932241	C	T	SNP	BCOR	NM_001123385	human	genbank	57_37b	-1	reviewed	silent	c.2358	p.K786	0.703	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors	
BTN2A3	54718	genome.wustl.edu	37	6	26431102	26431102	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26431102	26431102	G	A	SNP	BTN2A3	ENST00000297020	human	ensembl	57_37b	+1	known	silent	c.1020	p.Q340	0.002	HMMSmart_PRY	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IGv,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors	
BTRC	8945	genome.wustl.edu	37	10	103190165	103190165	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	103190165	103190165	C	T	SNP	BTRC	NM_033637	human	genbank	57_37b	+1	reviewed	nonsense	c.112	p.R38*	1.000	NULL	superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
C11orf60	56912	genome.wustl.edu	37	11	118416559	118416559	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118416559	118416559	G	T	SNP	C11orf60	NM_020153	human	genbank	57_37b	-1	validated	missense	c.835	p.P279T	1.000	NULL	NULL	-	no_errors	
CATSPERG	57828	genome.wustl.edu	37	19	38853402	38853402	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38853402	38853402	C	T	SNP	CATSPERG	NM_021185	human	genbank	57_37b	+1	validated	missense	c.2405	p.A802V	0.319	NULL	NULL	-	no_errors	
CCDC112	153733	genome.wustl.edu	37	5	114611095	114611095	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	114611095	114611095	G	A	SNP	CCDC112	NM_001040440	human	genbank	57_37b	-1	validated	nonsense	c.736	p.R246*	1.000	NULL	NULL	-	no_errors	
CCDC66	285331	genome.wustl.edu	37	3	56653531	56653531	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	56653531	56653531	G	A	SNP	CCDC66	NM_001141947	human	genbank	57_37b	+1	validated	missense	c.2611	p.D871N	0.517	NULL	NULL	-	no_errors	
CCNE1	898	genome.wustl.edu	37	19	30313457	30313457	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	30313457	30313457	G	A	SNP	CCNE1	NM_001238	human	genbank	57_37b	+1	reviewed	missense	c.1057	p.A353T	0.225	HMMPfam_Cyclin_C	superfamily_Cyclin-like,HMMPfam_Cyclin_N,PatternScan_CYCLINS,HMMSmart_SM00385,HMMPfam_Cyclin_C	-	no_errors	
CCR7	1236	genome.wustl.edu	37	17	38711716	38711716	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	38711716	38711716	T	A	SNP	CCR7	NM_001838	human	genbank	57_37b	-1	reviewed	missense	c.415	p.S139C	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
CDC14A	8556	genome.wustl.edu	37	1	100921011	100921011	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	100921011	100921011	A	G	SNP	CDC14A	NM_033312	human	genbank	57_37b	+1	reviewed	silent	c.570	p.A190	0.997	superfamily_(Phosphotyrosine protein) phosphatases II	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00195,HMMSmart_SM00404,HMMPfam_DSPc,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
CDCA7L	55536	genome.wustl.edu	37	7	21947807	21947807	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	21947807	21947807	G	T	SNP	CDCA7L	NM_018719	human	genbank	57_37b	-1	validated	missense	c.622	p.Q208K	0.900	NULL	HMMPfam_zf-4CXXC_R1	-	no_errors	
CDKAL1	54901	genome.wustl.edu	37	6	21201369	21201369	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	21201369	21201369	T	G	SNP	CDKAL1	NM_017774	human	genbank	57_37b	+1	validated	missense	c.1412	p.M471R	1.000	superfamily_Radical SAM enzymes,HMMPfam_TRAM	HMMPfam_UPF0004,superfamily_Radical SAM enzymes,HMMSmart_SM00729,PatternScan_UPF0004,HMMPfam_Radical_SAM,HMMPfam_TRAM	-	no_errors	
CHD9	80205	genome.wustl.edu	37	16	53279531	53279531	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	53279531	53279531	A	C	SNP	CHD9	NM_025134	human	genbank	57_37b	+1	validated	missense	c.3223	p.K1075Q	1.000	HMMPfam_SNF2_N	superfamily_Chromodomain-like,HMMSmart_CHROMO,HMMPfam_Chromo,superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_BRK	-	no_errors	
CHIA	27159	genome.wustl.edu	37	1	111854943	111854943	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	111854943	111854943	A	G	SNP	CHIA	NM_201653	human	genbank	57_37b	+1	validated	missense	c.187	p.N63D	0.009	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases,PatternScan_CHITINASE_18,superfamily_Chitinase insertion domain,HMMSmart_SM00494,superfamily_Invertebrate chitin-binding proteins,HMMPfam_CBM_14	-	no_errors	
CLASP2	23122	genome.wustl.edu	37	3	33668523	33668523	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	33668523	33668523	A	G	SNP	CLASP2	NM_015097	human	genbank	57_37b	-1	validated	missense	c.992	p.I331T	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
CNTLN	54875	genome.wustl.edu	37	9	17235769	17235769	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	17235769	17235769	A	T	SNP	CNTLN	NM_017738	human	genbank	57_37b	+1	validated	missense	c.648	p.K216N	1.000	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors	
CNTN4	152330	genome.wustl.edu	37	3	3080650	3080650	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	3080650	3080650	G	A	SNP	CNTN4	NM_175607	human	genbank	57_37b	+1	reviewed	missense	c.2126	p.G709D	1.000	superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
COG3	83548	genome.wustl.edu	37	13	46065675	46065675	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	46065675	46065675	T	C	SNP	COG3	NM_031431	human	genbank	57_37b	+1	reviewed	splice_site	c.1095+2	e10+2	1.000	-	-	-	no_errors	
CPA1	1357	genome.wustl.edu	37	7	130025723	130025723	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	130025723	130025723	A	G	SNP	CPA1	NM_001868	human	genbank	57_37b	+1	reviewed	missense	c.1031	p.Y344C	0.999	superfamily_SSF53187,HMMSmart_Zn_pept,HMMPfam_Peptidase_M14	superfamily_Prot_inh_propept,HMMPfam_Propep_M14,superfamily_SSF53187,HMMSmart_Zn_pept,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,PatternScan_CARBOXYPEPT_ZN_2	-	no_errors	
DAPK1	1612	genome.wustl.edu	37	9	90220079	90220079	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	90220079	90220079	G	T	SNP	DAPK1	NM_004938	human	genbank	57_37b	+1	reviewed	silent	c.273	p.L91	0.859	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SSF52540,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors	
DDX58	23586	genome.wustl.edu	37	9	32466308	32466308	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	32466308	32466308	C	T	SNP	DDX58	NM_014314	human	genbank	57_37b	-1	reviewed	missense	c.2317	p.E773K	0.949	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors	
DEFB115	245929	genome.wustl.edu	37	20	29847380	29847380	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	29847380	29847380	A	T	SNP	DEFB115	NM_001037730	human	genbank	57_37b	+1	provisional	missense	c.212	p.K71M	0.015	NULL	NULL	-	no_errors	
DLGAP4	22839	genome.wustl.edu	37	20	35152658	35152658	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	35152658	35152658	G	C	SNP	DLGAP4	NM_014902	human	genbank	57_37b	+1	reviewed	missense	c.2509	p.G837R	1.000	HMMPfam_GKAP	HMMPfam_GKAP	-	no_errors	
ELOVL6	79071	genome.wustl.edu	37	4	110980805	110980805	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	110980805	110980805	G	C	SNP	ELOVL6	NM_001130721	human	genbank	57_37b	-1	validated	missense	c.327	p.S109R	1.000	HMMPfam_ELO	HMMPfam_ELO,PatternScan_ELO	-	no_errors	
EPB41L1	2036	genome.wustl.edu	37	20	34775661	34775661	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	34775661	34775661	C	G	SNP	EPB41L1	NM_012156	human	genbank	57_37b	+1	reviewed	nonsense	c.849	p.Y283*	0.174	HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA,HMMPfam_SAB,HMMPfam_4_1_CTD	-	no_errors	
EXT1	2131	genome.wustl.edu	37	8	118842508	118842508	+	Nonsense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	118842508	118842508	A	C	SNP	EXT1	NM_000127	human	genbank	57_37b	-1	reviewed	nonsense	c.1245	p.Y415*	1.000	NULL	HMMPfam_Exostosin,superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_64	-	no_errors	
FAM134C	162427	genome.wustl.edu	37	17	40733631	40733631	+	RNA	DEL	T	T	-	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40733631	40733631	T	-	DEL	FAM134C	NR_026697	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.853	-	-	(deletion:rna[40731526,40734288])	no_errors	
FAM83C	128876	genome.wustl.edu	37	20	33874929	33874929	+	Silent	SNP	G	G	A	rs114056675	by1000genomes	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	33874929	33874929	G	A	SNP	FAM83C	NM_178468	human	genbank	57_37b	-1	validated	silent	c.1653	p.A551	0.022	NULL	HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease	-		
FUK	197258	genome.wustl.edu	37	16	70500919	70500919	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	70500919	70500919	T	A	SNP	FUK	ENST00000428974	human	ensembl	57_37b	+1	known	silent	c.495	p.S165	0.000	NULL	HMMPfam_Fucokinase	-	no_errors	
GLUL	2752	genome.wustl.edu	37	1	182354560	182354560	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	182354560	182354560	C	T	SNP	GLUL	NM_001033044	human	genbank	57_37b	-1	reviewed	silent	c.735	p.G245	0.004	superfamily_Glutamine synthetase/guanido kinase,HMMPfam_Gln-synt_C,PatternScan_GLNA_ATP	superfamily_Glutamine synthetase N-terminal domain,HMMPfam_Gln-synt_N,PatternScan_GLNA_1,superfamily_Glutamine synthetase/guanido kinase,HMMPfam_Gln-synt_C,PatternScan_GLNA_ATP	-	no_errors	
GP1BA	2811	genome.wustl.edu	37	17	4836276	4836276	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4836276	4836276	A	C	SNP	GP1BA	NM_000173	human	genbank	57_37b	+1	reviewed	missense	c.377	p.N126T	0.991	superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT	-	no_errors	
GRIK2	2898	genome.wustl.edu	37	6	102124623	102124623	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	102124623	102124623	G	C	SNP	GRIK2	NM_021956	human	genbank	57_37b	+1	reviewed	missense	c.667	p.E223Q	1.000	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors	
HEG1	57493	genome.wustl.edu	37	3	124748125	124748125	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	124748125	124748125	G	C	SNP	HEG1	NM_020733	human	genbank	57_37b	-1	validated	missense	c.524	p.S175C	0.180	NULL	superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors	
HIPK2	28996	genome.wustl.edu	37	7	139416107	139416107	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	139416107	139416107	C	A	SNP	HIPK2	ENST00000263551	human	ensembl	57_37b	-1	known	nonsense	c.727	p.E243*	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors	
HNF4A	3172	genome.wustl.edu	37	20	43042402	43042402	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	43042402	43042402	A	T	SNP	HNF4A	NM_000457	human	genbank	57_37b	+1	reviewed	missense	c.454	p.I152F	1.000	superfamily_Nuclear receptor ligand-binding domain	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors	
HUWE1	10075	genome.wustl.edu	37	X	53644083	53644083	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	53644083	53644083	C	G	SNP	HUWE1	NM_031407	human	genbank	57_37b	-1	reviewed	missense	c.1805	p.G602A	1.000	superfamily_ARM repeat,HMMPfam_DUF913	HMMPfam_DUF908,superfamily_ARM repeat,HMMPfam_DUF913,superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165,HMMPfam_WWE,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors	
IFNA10	3446	genome.wustl.edu	37	9	21206600	21206600	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	21206600	21206600	A	C	SNP	IFNA10	NM_002171	human	genbank	57_37b	-1	provisional	missense	c.497	p.V166G	0.013	HMMPfam_Interferon,superfamily_4-helical cytokines,HMMSmart_SM00076	HMMPfam_Interferon,superfamily_4-helical cytokines,HMMSmart_SM00076,PatternScan_INTERFERON_A_B_D	-	no_errors	
IFT52	51098	genome.wustl.edu	37	20	42275617	42275617	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	42275617	42275617	T	C	SNP	IFT52	NM_016004	human	genbank	57_37b	+1	validated	silent	c.1308	p.N436	0.855	NULL	HMMPfam_ABC_transp_aux	-	no_errors	
IGF2BP3	10643	genome.wustl.edu	37	7	23351989	23351989	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	23351989	23351989	G	A	SNP	IGF2BP3	NM_006547	human	genbank	57_37b	-1	reviewed	missense	c.1732	p.R578W	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1	-	no_errors	
INPP5J	27124	genome.wustl.edu	37	22	31522391	31522391	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	31522391	31522391	C	A	SNP	INPP5J	NM_001002837	human	genbank	57_37b	+1	validated	missense	c.197	p.T66N	0.994	superfamily_Exo_endo_phos,HMMSmart_IPPc,HMMPfam_Exo_endo_phos	superfamily_Exo_endo_phos,HMMSmart_IPPc,HMMPfam_Exo_endo_phos	-	no_errors	
IQCD	115811	genome.wustl.edu	37	12	113633529	113633529	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	113633529	113633529	C	G	SNP	IQCD	NM_138451	human	genbank	57_37b	-1	provisional	missense	c.895	p.V299L	0.985	HMMSmart_IQ,HMMPfam_IQ	HMMSmart_IQ,HMMPfam_IQ	-	no_errors	
IRAK2	3656	genome.wustl.edu	37	3	10255044	10255044	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	10255044	10255044	C	T	SNP	IRAK2	NM_001570	human	genbank	57_37b	+1	reviewed	missense	c.682	p.H228Y	0.086	superfamily_Kinase_like,HMMPfam_Pkinase	PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_ATP,superfamily_DEATH_like,HMMPfam_Death,superfamily_Kinase_like,HMMPfam_Pkinase	-	no_errors	
JAK2	3717	genome.wustl.edu	37	9	5022119	5022119	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	5022119	5022119	C	A	SNP	JAK2	NM_004972	human	genbank	57_37b	+1	reviewed	nonsense	c.132	p.Y44*	0.996	HMMSmart_B41	PatternScan_FERM_1,PatternScan_FERM_2,HMMSmart_B41,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
KCNQ5	56479	genome.wustl.edu	37	6	73900398	73900398	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	73900398	73900398	G	T	SNP	KCNQ5	NM_019842	human	genbank	57_37b	+1	reviewed	missense	c.1680	p.M560I	1.000	HMMPfam_KCNQ_channel	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel	-	no_errors	
KIF20B	9585	genome.wustl.edu	37	10	91497158	91497158	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	91497158	91497158	A	T	SNP	KIF20B	NM_016195	human	genbank	57_37b	+1	validated	missense	c.2440	p.S814C	0.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors	
KIT	3815	genome.wustl.edu	37	4	55589813	55589813	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	55589813	55589813	G	A	SNP	KIT	NM_000222	human	genbank	57_37b	+1	reviewed	missense	c.1295	p.G432E	1.000	NULL	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_IG,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
KLF17	128209	genome.wustl.edu	37	1	44596297	44596301	+	Frame_Shift_Del	DEL	CAGTG	CAGTG	-	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	CAGTG	CAGTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	44596297	44596301	CAGTG	-	DEL	KLF17	NM_173484	human	genbank	57_37b	+1	validated	frame_shift_del	c.1039_1043	p.C348fs	0.010:0.027:0.923:0.999:0.999	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[44596184,44596428])	no_errors	
KRT3	3850	genome.wustl.edu	37	12	53184633	53184633	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53184633	53184633	G	A	SNP	KRT3	NM_057088	human	genbank	57_37b	-1	reviewed	missense	c.1559	p.A520V	0.999	NULL	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors	
LASS2	29956	genome.wustl.edu	37	1	150941434	150941434	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150941434	150941434	G	A	SNP	LASS2	NM_022075	human	genbank	57_37b	-1	reviewed	silent	c.133	p.L45	1.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8	-	no_errors	
LGR5	8549	genome.wustl.edu	37	12	71978313	71978313	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	71978313	71978313	G	T	SNP	LGR5	NM_003667	human	genbank	57_37b	+1	provisional	missense	c.2523	p.W841C	1.000	superfamily_Family A G protein-coupled receptor-like	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_RNI-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_L domain-like,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors	
LMX1A	4009	genome.wustl.edu	37	1	165173228	165173228	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	165173228	165173228	A	T	SNP	LMX1A	NM_177398	human	genbank	57_37b	-1	provisional	missense	c.1038	p.S346R	1.000	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
LOC100288538	0	genome.wustl.edu	37	22	31674537	31674565	+	In_Frame_Del	DEL	TTTAGAAGCAGAACAAGCCATTCCTATTA	TTTAGAAGCAGAACAAGCCATTCCTATTA	-	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	TTTAGAAGCAGAACAAGCCATTCCTATTA	TTTAGAAGCAGAACAAGCCATTCCTATTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	31674537	31674565	TTTAGAAGCAGAACAAGCCATTCCTATTA	-	DEL	LOC100288538	XM_002343775	human	genbank	57_37b	-1	model	in_frame_del	c.21_1	p.MACSASK1in_frame_del	0.004:0.000:0.001:0.322:0.763:0.844:0.872:0.879:0.152:0.155:0.232:0.376:0.416:0.405:0.391:0.507:0.953:0.980:0.995:0.994:0.994	NULL	NULL	(deletion:cds_exon[31674285,31674557], utr_exon[31674558,31674800])	no_errors	
LOXL4	84171	genome.wustl.edu	37	10	100015449	100015449	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	100015449	100015449	C	A	SNP	LOXL4	NM_032211	human	genbank	57_37b	-1	reviewed	missense	c.1476	p.M492I	1.000	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Lysyl_oxidase,PatternScan_LYSYL_OXIDASE	-	no_errors	
LZTS1	11178	genome.wustl.edu	37	8	20112577	20112577	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	20112577	20112577	T	C	SNP	LZTS1	NM_021020	human	genbank	57_37b	-1	reviewed	missense	c.116	p.D39G	0.999	NULL	HMMPfam_Fez1	-	no_errors	
MACF1	23499	genome.wustl.edu	37	1	39799640	39799640	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	39799640	39799640	T	G	SNP	MACF1	NM_033044	human	genbank	57_37b	+1	reviewed	missense	c.2700	p.I900M	0.154	superfamily_SSF75399,HMMSmart_PLEC	superfamily_SSF75399,HMMSmart_PLEC,HMMPfam_Plectin,HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_GAS2,HMMSmart_GAS2	-	no_errors	
MDH2	4191	genome.wustl.edu	37	7	75689766	75689766	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	75689766	75689766	G	A	SNP	MDH2	NM_005918	human	genbank	57_37b	+1	reviewed	missense	c.505	p.V169M	1.000	superfamily_NAD(P)-bd,PatternScan_MDH,superfamily_Lactate_DH/Glyco_hydro_4_C	superfamily_NAD(P)-bd,HMMPfam_Ldh_1_N,PatternScan_MDH,superfamily_Lactate_DH/Glyco_hydro_4_C,HMMPfam_Ldh_1_C	-	no_errors	
MGAM	8972	genome.wustl.edu	37	7	141766522	141766522	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	141766522	141766522	G	C	SNP	MGAM	ENST00000475668	human	ensembl	57_37b	+1	known	splice_site	c.4919+1	e40+1	1.000	-	-	-	no_errors	
MGAM	8972	genome.wustl.edu	37	7	141802435	141802435	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	141802435	141802435	T	G	SNP	MGAM	NM_004668	human	genbank	57_37b	+1	reviewed	missense	c.5281	p.Y1761D	0.818	NULL	HMMPfam_Trefoil,HMMPfam_Glyco_hydro_31	-	no_errors	
MTRR	4552	genome.wustl.edu	37	5	7878078	7878078	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	7878078	7878078	G	A	SNP	MTRR	NM_024010	human	genbank	57_37b	+1	reviewed	silent	c.504	p.P168	0.030	superfamily_Flavoproteins,HMMPfam_Flavodoxin_1	superfamily_Flavoproteins,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1	-	no_errors	
MYO1B	4430	genome.wustl.edu	37	2	192250662	192250662	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	192250662	192250662	C	A	SNP	MYO1B	NM_001130158	human	genbank	57_37b	+1	validated	missense	c.1406	p.T469K	0.985	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_Myosin_TH1	-	no_errors	
NAV2	89797	genome.wustl.edu	37	11	20119207	20119207	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	20119207	20119207	C	G	SNP	NAV2	NM_182964	human	genbank	57_37b	+1	validated	missense	c.6106	p.R2036G	1.000	NULL	superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00033,HMMPfam_CH,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382	-	no_errors	
NEDD9	4739	genome.wustl.edu	37	6	11213899	11213899	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	11213899	11213899	C	T	SNP	NEDD9	NM_001142393	human	genbank	57_37b	-1	validated	missense	c.74	p.R25H	1.000	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_Serine_rich	-	no_errors	
NFASC	23114	genome.wustl.edu	37	1	204966311	204966311	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	204966311	204966311	G	T	SNP	NFASC	ENST00000367172	human	ensembl	57_37b	+1	known	missense	c.3117	p.L1039F	0.915	superfamily_Fibronectin type III	HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
NKAPL	222698	genome.wustl.edu	37	6	28227179	28227179	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	28227179	28227179	C	A	SNP	NKAPL	NM_001007531	human	genbank	57_37b	+1	provisional	silent	c.30	p.S10	0.000	NULL	HMMPfam_DUF926	-	no_errors	
NLRC5	84166	genome.wustl.edu	37	16	57104491	57104491	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	57104491	57104491	T	C	SNP	NLRC5	NM_032206	human	genbank	57_37b	+1	validated	missense	c.4628	p.M1543T	0.371	superfamily_RNI-like,HMMSmart_SM00367,HMMSmart_SM00368	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00367,HMMSmart_SM00368,HMMPfam_LRR_1	-	no_errors	
NMUR2	56923	genome.wustl.edu	37	5	151777641	151777641	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	151777641	151777641	T	G	SNP	NMUR2	NM_020167	human	genbank	57_37b	-1	reviewed	missense	c.791	p.K264T	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
NOBOX	135935	genome.wustl.edu	37	7	144107279	144107279	+	Silent	SNP	A	A	G	rs1208179	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	144107279	144107279	A	G	SNP	NOBOX	NM_001080413	human	genbank	57_37b	-1	provisional	silent	c.42	p.G14	0.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	-		
OMA1	115209	genome.wustl.edu	37	1	59004723	59004723	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	59004723	59004723	G	C	SNP	OMA1	NM_145243	human	genbank	57_37b	-1	provisional	missense	c.244	p.L82V	0.000	NULL	HMMPfam_Peptidase_M48,PatternScan_ZINC_PROTEASE	-	no_errors	
OR10A7	121364	genome.wustl.edu	37	12	55614826	55614826	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	55614826	55614826	C	A	SNP	OR10A7	NM_001005280	human	genbank	57_37b	+1	provisional	missense	c.18	p.H6Q	0.179	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PCNT	5116	genome.wustl.edu	37	21	47775512	47775512	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	47775512	47775512	G	A	SNP	PCNT	NM_006031	human	genbank	57_37b	+1	reviewed	missense	c.1907	p.R636H	0.000	NULL	HMMPfam_PACT_coil_coil	-	no_errors	
PCSK1	5122	genome.wustl.edu	37	5	95746673	95746673	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	95746673	95746673	C	A	SNP	PCSK1	NM_000439	human	genbank	57_37b	-1	reviewed	silent	c.900	p.G300	0.986	superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8	superfamily_Prot_inh_propept,superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Gal_bind_like,HMMPfam_P_proprotein	-	no_errors	
PLEC	0	genome.wustl.edu	37	8	144996029	144996029	+	Missense_Mutation	SNP	A	A	G	rs7833924	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144996029	144996029	A	G	SNP	PLEC	NM_201380	human	genbank	57_37b	-1	reviewed	missense	c.8371	p.S2791P	0.980	superfamily_Plakin repeat	HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	-		
PMFBP1	83449	genome.wustl.edu	37	16	72170703	72170703	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	72170703	72170703	G	T	SNP	PMFBP1	NM_031293	human	genbank	57_37b	-1	validated	missense	c.934	p.Q312K	0.774	NULL	NULL	-	no_errors	
PPEF2	5470	genome.wustl.edu	37	4	76782042	76782042	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	76782042	76782042	G	A	SNP	PPEF2	NM_006239	human	genbank	57_37b	-1	reviewed	silent	c.2040	p.T680	0.767	superfamily_Metallo-dependent phosphatases,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand	HMMPfam_IQ,HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE,HMMSmart_SM00054,superfamily_EF-hand,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors	
PPP5C	5536	genome.wustl.edu	37	19	46890423	46890423	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46890423	46890423	G	A	SNP	PPP5C	NM_006247	human	genbank	57_37b	+1	provisional	silent	c.978	p.Q326	1.000	superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE	-	no_errors	
PRSS35	167681	genome.wustl.edu	37	6	84233451	84233451	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	84233451	84233451	G	A	SNP	PRSS35	NM_153362	human	genbank	57_37b	+1	validated	silent	c.291	p.R97	0.026	NULL	PatternScan_TRYPSIN_SER,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS	-	no_errors	
PSG11	5680	genome.wustl.edu	37	19	43530506	43530506	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	43530506	43530506	G	C	SNP	PSG11	NM_002785	human	genbank	57_37b	-1	validated	missense	c.19	p.P7A	0.010	HMMPfam_V-set	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors	
RAPGEFL1	51195	genome.wustl.edu	37	17	38345157	38345157	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	38345157	38345157	G	A	SNP	RAPGEFL1	NM_016339	human	genbank	57_37b	+1	validated	silent	c.255	p.K85	0.995	superfamily_Ras_GEF	superfamily_Ras_GEF,HMMPfam_RA,HMMSmart_RasGEF,HMMPfam_RasGEF	-	no_errors	
RBM23	55147	genome.wustl.edu	37	14	23371049	23371049	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23371049	23371049	G	A	SNP	RBM23	NM_001077351	human	genbank	57_37b	-1	reviewed	silent	c.1290	p.L430	0.976	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors	
RINT1	60561	genome.wustl.edu	37	7	105187507	105187507	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	105187507	105187507	A	T	SNP	RINT1	NM_021930	human	genbank	57_37b	+1	validated	missense	c.666	p.K222N	1.000	NULL	HMMPfam_RINT1_TIP1	-	no_errors	
SDCCAG8	10806	genome.wustl.edu	37	1	243504344	243504349	+	In_Frame_Del	DEL	TTGATC	TTGATC	-	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	TTGATC	TTGATC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	243504344	243504349	TTGATC	-	DEL	SDCCAG8	NM_006642	human	genbank	57_37b	+1	validated	in_frame_del	c.1225_1230	p.IL410in_frame_del	0.912:0.839:0.117:0.032:0.046:0.031	NULL	NULL	(deletion:cds_exon[243504341,243504475])	no_errors	
SEMA7A	8482	genome.wustl.edu	37	15	74707008	74707009	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	74707008	74707009	-	A	INS	SEMA7A	NM_003612	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.1174_1173	p.E391fs	0.998:0.992	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG	-	no_errors	
SIPA1L1	26037	genome.wustl.edu	37	14	72055185	72055185	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	72055185	72055185	G	C	SNP	SIPA1L1	NM_015556	human	genbank	57_37b	+1	provisional	missense	c.596	p.G199A	1.000	NULL	superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors	
SLC26A5	375611	genome.wustl.edu	37	7	103051936	103051936	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	103051936	103051936	G	T	SNP	SLC26A5	NM_198999	human	genbank	57_37b	-1	reviewed	silent	c.501	p.G167	0.272	NULL	PatternScan_SLC26A,HMMPfam_Sulfate_transp,HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa	-	no_errors	
SLC35F2	54733	genome.wustl.edu	37	11	107676086	107676086	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	107676086	107676086	G	T	SNP	SLC35F2	NM_017515	human	genbank	57_37b	-1	validated	missense	c.730	p.L244I	1.000	HMMPfam_DUF914,superfamily_Multidrug resistance efflux transporter EmrE	HMMPfam_DUF914,superfamily_Multidrug resistance efflux transporter EmrE	-	no_errors	
SLFN12L	342615	genome.wustl.edu	37	17	33807026	33807026	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	33807026	33807026	G	A	SNP	SLFN12L	NM_001145027	human	genbank	57_37b	-1	validated	missense	c.290	p.A97V	0.015	NULL	HMMPfam_AAA_4	-	no_errors	
SNORD115-18	0	genome.wustl.edu	37	15	25448374	25448374	+	RNA	SNP	G	G	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	25448374	25448374	G	T	SNP	SNORD115-18	NR_003310	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.002	-	-	-	no_errors	
SNX20	124460	genome.wustl.edu	37	16	50707754	50707754	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	50707754	50707754	G	A	SNP	SNX20	NM_182854	human	genbank	57_37b	-1	validated	missense	c.514	p.R172C	1.000	superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312	superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312	-	no_errors	
SOS1	6654	genome.wustl.edu	37	2	39224156	39224156	+	Silent	SNP	C	C	T	rs35462677	byCluster	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	39224156	39224156	C	T	SNP	SOS1	NM_005633	human	genbank	57_37b	-1	reviewed	silent	c.2988	p.P996	1.000	superfamily_Ras GEF,HMMSmart_SM00147	superfamily_Histone-fold,HMMPfam_Histone,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF	-		
STAT4	6775	genome.wustl.edu	37	2	191931190	191931190	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	191931190	191931190	T	C	SNP	STAT4	NM_003151	human	genbank	57_37b	-1	reviewed	missense	c.596	p.Q199R	1.000	superfamily_STAT,HMMPfam_STAT_alpha	superfamily_STAT,HMMPfam_STAT_int,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_P53_like_DNA_bnd,superfamily_SSF55550,HMMPfam_SH2,HMMSmart_SH2	-	no_errors	
SUPT16H	11198	genome.wustl.edu	37	14	21831260	21831260	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	21831260	21831260	C	G	SNP	SUPT16H	NM_007192	human	genbank	57_37b	-1	reviewed	missense	c.1444	p.A482P	1.000	NULL	superfamily_Peptidase_M24_cat_core,HMMPfam_Peptidase_M24,HMMPfam_SPT16,HMMPfam_Rtt106	-	no_errors	
SYNE2	23224	genome.wustl.edu	37	14	64519171	64519171	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	64519171	64519171	A	C	SNP	SYNE2	NM_182914	human	genbank	57_37b	+1	reviewed	missense	c.8540	p.Q2847P	0.715	NULL	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMSmart_SPEC,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH	-	no_errors	
TEKT2	27285	genome.wustl.edu	37	1	36550806	36550806	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	36550806	36550806	A	T	SNP	TEKT2	NM_014466	human	genbank	57_37b	+1	reviewed	missense	c.199	p.R67W	1.000	HMMPfam_Tektin	HMMPfam_Tektin	-	no_errors	
TMEM156	80008	genome.wustl.edu	37	4	38990517	38990517	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	38990517	38990517	A	C	SNP	TMEM156	NM_024943	human	genbank	57_37b	-1	provisional	silent	c.693	p.T231	0.735	NULL	NULL	-	no_errors	
TMTC2	160335	genome.wustl.edu	37	12	83359523	83359523	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	83359523	83359523	G	A	SNP	TMTC2	NM_152588	human	genbank	57_37b	+1	provisional	silent	c.1869	p.E623	1.000	superfamily_TPR-like,HMMPfam_TPR_2,HMMSmart_SM00028	HMMPfam_DUF1736,superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,HMMPfam_TPR_2	-	no_errors	
TPP1	1200	genome.wustl.edu	37	11	6638951	6638959	+	In_Frame_Del	DEL	GGGTCAGTG	GGGTCAGTG	-	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	GGGTCAGTG	GGGTCAGTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6638951	6638959	GGGTCAGTG	-	DEL	TPP1	NM_000391	human	genbank	57_37b	-1	reviewed	in_frame_del	c.286_278	p.PLT93in_frame_del	1.000:1.000:1.000:1.000:0.966:0.985:0.980:0.977:0.983	superfamily_Protease propeptides/inhibitors,HMMPfam_Pro-kuma_activ	superfamily_Protease propeptides/inhibitors,HMMPfam_Pro-kuma_activ,superfamily_Subtilisin-like	(deletion:cds_exon[6638857,6639007])	no_errors	
TRIM29	23650	genome.wustl.edu	37	11	120008036	120008036	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	120008036	120008036	A	C	SNP	TRIM29	NM_012101	human	genbank	57_37b	-1	reviewed	missense	c.704	p.F235C	1.000	HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain	HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain	-	no_errors	
TRPM6	140803	genome.wustl.edu	37	9	77377214	77377214	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	77377214	77377214	G	A	SNP	TRPM6	NM_017662	human	genbank	57_37b	-1	validated	missense	c.4373	p.S1458L	0.999	NULL	HMMPfam_Ion_trans,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00811,HMMPfam_Alpha_kinase	-	no_errors	
USP34	9736	genome.wustl.edu	37	2	61492665	61492665	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	61492665	61492665	C	T	SNP	USP34	NM_014709	human	genbank	57_37b	-1	validated	nonsense	c.5645	p.W1882*	1.000	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors	
VPS13C	54832	genome.wustl.edu	37	15	62242616	62242616	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	62242616	62242616	C	A	SNP	VPS13C	NM_020821	human	genbank	57_37b	-1	validated	missense	c.4537	p.A1513S	1.000	NULL	HMMPfam_DUF1162	-	no_errors	
WWC3	55841	genome.wustl.edu	37	X	10062266	10062266	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09A-01A-11W-A019-09	TCGA-A8-A09A-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	10062266	10062266	C	T	SNP	WWC3	NM_015691	human	genbank	57_37b	+1	validated	missense	c.602	p.A201V	0.595	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors	
