Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ALK	238	genome.wustl.edu	37	2	29416321	29416321	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	29416321	29416321	G	A	SNP	ALK	NM_004304	human	genbank	57_37b	-1	reviewed	silent	c.4632	p.N1544	0.000	NULL	superfamily_LDL receptor-like module,HMMSmart_SM00192,HMMPfam_MAM,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	-	no_errors	
ATRX	546	genome.wustl.edu	37	X	76939543	76939543	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	76939543	76939543	A	T	SNP	ATRX	NM_000489	human	genbank	57_37b	-1	reviewed	missense	c.1205	p.I402N	0.997	NULL	superfamily_FYVE/PHD zinc finger,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors	
BZRAP1	9256	genome.wustl.edu	37	17	56386118	56386118	+	Silent	SNP	A	G	G	rs2680689	byCluster;by2Hit2Allele;by1000genomes	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56386118	56386118	A	G	SNP	BZRAP1	NM_004758	human	genbank	57_37b	-1	validated	silent	c.4515	p.D1505	0.504	NULL	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	-		
C2orf89	129293	genome.wustl.edu	37	2	85097825	85097825	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	85097825	85097825	G	A	SNP	C2orf89	NM_001080824	human	genbank	57_37b	-1	predicted	nonsense	c.193	p.R65*	0.978	NULL	NULL	-	no_errors	
CCDC102B	79839	genome.wustl.edu	37	18	66513554	66513554	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	66513554	66513554	C	T	SNP	CCDC102B	NM_001093729	human	genbank	57_37b	+1	validated	missense	c.832	p.R278C	0.994	NULL	NULL	-	no_errors	
CDC42BPA	8476	genome.wustl.edu	37	1	227182529	227182529	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	227182529	227182529	C	T	SNP	CDC42BPA	NM_003607	human	genbank	57_37b	-1	reviewed	missense	c.5023	p.G1675R	0.721	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C,HMMPfam_DMPK_coil,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,PatternScan_C_TYPE_LECTIN_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_CNH,HMMSmart_CNH,HMMSmart_PBD	-	no_errors	
DOC2A	8448	genome.wustl.edu	37	16	30020844	30020844	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	30020844	30020844	G	A	SNP	DOC2A	NM_003586	human	genbank	57_37b	-1	reviewed	silent	c.297	p.Y99	0.987	superfamily_C2_CaLB	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors	
ENSG00000183666	0	genome.wustl.edu	37	5	21459801	21459801	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	21459801	21459801	G	T	SNP	ENSG00000183666	ENST00000328346	human	ensembl	57_37b	+1	known	missense	c.40	p.A14S	0.029	NULL	superfamily_beta-Galactosidase/glucuronidase domain,HMMPfam_Glyco_hydro_2	-	no_errors	
FAM74A3	728495	genome.wustl.edu	37	9	40715712	40715712	+	RNA	SNP	C	C	G	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	40715712	40715712	C	G	SNP	FAM74A3	NR_026801	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.042	-	-	-	no_errors	
FANCA	2175	genome.wustl.edu	37	16	89816220	89816220	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	89816220	89816220	G	A	SNP	FANCA	NM_000135	human	genbank	57_37b	-1	reviewed	missense	c.3157	p.R1053C	0.000	NULL	HMMPfam_Fanconi_A	-	no_errors	
GATA3	2625	genome.wustl.edu	37	10	8115907	8115914	+	Frame_Shift_Del	DEL	CGCCCACG	CGCCCACG	-	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	CGCCCACG	CGCCCACG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8115907	8115914	CGCCCACG	-	DEL	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1256_1263	p.P420fs	1.000:0.442:1.000:1.000:0.984:1.000:1.000:0.979	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	(deletion:cds_exon[8115702,8115986])	no_errors	
GGT1	2678	genome.wustl.edu	37	22	25019807	25019807	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	25019807	25019807	G	A	SNP	GGT1	NM_001032364	human	genbank	57_37b	+1	reviewed	missense	c.944	p.R315H	1.000	HMMPfam_G_glu_transpept	HMMPfam_G_glu_transpept,PatternScan_G_GLU_TRANSPEPTIDASE	-	no_errors	
HEATR7B2	133558	genome.wustl.edu	37	5	41005744	41005744	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	41005744	41005744	G	A	SNP	HEATR7B2	NM_173489	human	genbank	57_37b	-1	validated	silent	c.3753	p.S1251	0.999	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors	
HEATR7B2	133558	genome.wustl.edu	37	5	41015496	41015496	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	41015496	41015496	G	A	SNP	HEATR7B2	NM_173489	human	genbank	57_37b	-1	validated	missense	c.2969	p.S990F	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors	
HIST1H1C	3006	genome.wustl.edu	37	6	26056019	26056021	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26056019	26056021	TTC	-	DEL	HIST1H1C	NM_005319	human	genbank	57_37b	-1	reviewed	in_frame_del	c.638_636	p.K213in_frame_del	1.000:1.000:1.000	NULL	"HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Linker_histone"	(deletion:cds_exon[26056015,26056656])	no_errors	
KCNG4	93107	genome.wustl.edu	37	16	84270499	84270499	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	84270499	84270499	G	A	SNP	KCNG4	NM_172347	human	genbank	57_37b	-1	reviewed	missense	c.593	p.S198L	0.310	NULL	superfamily_POZ domain,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors	
KIT	3815	genome.wustl.edu	37	4	55569972	55569972	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	55569972	55569972	C	T	SNP	KIT	NM_000222	human	genbank	57_37b	+1	reviewed	missense	c.839	p.A280V	0.800	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_IG,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
LMNA	4000	genome.wustl.edu	37	1	156100489	156100489	+	Silent	SNP	C	C	T	rs80356805	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156100489	156100489	C	T	SNP	LMNA	NM_170707	human	genbank	57_37b	+1	reviewed	silent	c.438	p.A146	0.012	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF,superfamily_Lamin A/C globular tail domain,HMMPfam_IF_tail	-		
LOC100286978	0	genome.wustl.edu	37	14	60212423	60212423	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	60212423	60212423	T	A	SNP	LOC100286978	XM_002343277	human	genbank	57_37b	+1	model	nonsense	c.251	p.L84*	0.970	NULL	NULL	-	no_errors	
MIR486	0	genome.wustl.edu	37	8	41518006	41518006	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	41518006	41518006	G	A	SNP	MIR486	ENST00000408108	human	ensembl	57_37b	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	
MKL1	57591	genome.wustl.edu	37	22	40825739	40825739	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	40825739	40825739	G	A	SNP	MKL1	NM_020831	human	genbank	57_37b	-1	validated	nonsense	c.172	p.Q58*	1.000	NULL	HMMSmart_RPEL,superfamily_SSF68906,HMMPfam_SAP,HMMSmart_SAP	-	no_errors	
MOV10L1	54456	genome.wustl.edu	37	22	50555645	50555645	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50555645	50555645	G	A	SNP	MOV10L1	NM_018995	human	genbank	57_37b	+1	reviewed	missense	c.1319	p.R440Q	0.997	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
MYH4	4622	genome.wustl.edu	37	17	10355578	10355578	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	10355578	10355578	G	A	SNP	MYH4	NM_017533	human	genbank	57_37b	-1	validated	missense	c.3418	p.R1140C	1.000	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_Myosin_tail_1	-	no_errors	
NDUFA1	4694	genome.wustl.edu	37	X	119005896	119005896	+	Missense_Mutation	SNP	G	G	A	rs104894884	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	119005896	119005896	G	A	SNP	NDUFA1	NM_004541	human	genbank	57_37b	+1	reviewed	missense	c.22	p.G8R	0.789	NULL	NULL	-		
NPTXR	23467	genome.wustl.edu	37	22	39219199	39219199	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	39219199	39219199	C	T	SNP	NPTXR	NM_014293	human	genbank	57_37b	-1	reviewed	silent	c.1167	p.R389	1.000	HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Pentaxin	HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Pentaxin	-	no_errors	
OLFML3	56944	genome.wustl.edu	37	1	114523968	114523968	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	114523968	114523968	C	T	SNP	OLFML3	NM_020190	human	genbank	57_37b	+1	validated	silent	c.798	p.Y266	0.257	HMMPfam_OLF,HMMSmart_SM00284	HMMPfam_OLF,HMMSmart_SM00284	-	no_errors	
OR5R1	219479	genome.wustl.edu	37	11	56184810	56184810	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	56184810	56184810	G	A	SNP	OR5R1	NM_001004744	human	genbank	57_37b	-1	provisional	missense	c.899	p.A300V	0.079	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
PIK3CB	5291	genome.wustl.edu	37	3	138403480	138403480	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	138403480	138403480	G	A	SNP	PIK3CB	NM_006219	human	genbank	57_37b	-1	provisional	missense	c.2302	p.L768F	1.000	superfamily_Kinase_like	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PRKRIR	5612	genome.wustl.edu	37	11	76062947	76062947	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	76062947	76062947	C	T	SNP	PRKRIR	NM_004705	human	genbank	57_37b	-1	provisional	missense	c.1247	p.G416D	0.989	NULL	HMMPfam_THAP,HMMSmart_SM00692,HMMPfam_hATC	-	no_errors	
PSMD14	10213	genome.wustl.edu	37	2	162175351	162175351	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	162175351	162175351	T	G	SNP	PSMD14	NM_005805	human	genbank	57_37b	+1	validated	silent	c.15	p.L5	1.000	NULL	HMMPfam_Mov34,superfamily_JAB1/MPN domain,HMMSmart_SM00232	-	no_errors	
RASAL1	8437	genome.wustl.edu	37	12	113573237	113573237	+	Missense_Mutation	SNP	C	C	G	rs7960087	byCluster;byFrequency;by1000genomes	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	113573237	113573237	C	G	SNP	RASAL1	NM_004658	human	genbank	57_37b	-1	reviewed	missense	c.31	p.V11L	1.000	HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00107,HMMPfam_BTK	-		
REG3G	130120	genome.wustl.edu	37	2	79255029	79255029	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	79255029	79255029	G	T	SNP	REG3G	NM_001008387	human	genbank	57_37b	+1	validated	missense	c.430	p.G144C	0.003	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors	
SEMA5B	54437	genome.wustl.edu	37	3	122629793	122629793	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	122629793	122629793	C	T	SNP	SEMA5B	NM_001031702	human	genbank	57_37b	-1	validated	missense	c.3191	p.R1064H	1.000	NULL	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	-	no_errors	
SH3GL2	6456	genome.wustl.edu	37	9	17787384	17787384	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	17787384	17787384	C	T	SNP	SH3GL2	NM_003026	human	genbank	57_37b	+1	validated	missense	c.338	p.A113V	1.000	HMMSmart_SM00721,HMMPfam_BAR	HMMSmart_SM00721,HMMPfam_BAR,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
STARD9	57519	genome.wustl.edu	37	15	42984870	42984870	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42984870	42984870	C	T	SNP	STARD9	XM_001129482	human	genbank	57_37b	+1	model	silent	c.10836	p.L3612	0.999	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD/FHA domain,superfamily_Bet v1-like	-	no_errors	
TK2	7084	genome.wustl.edu	37	16	66584002	66584002	+	Missense_Mutation	SNP	T	T	C	rs3743716	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	66584002	66584002	T	C	SNP	TK2	NM_004614	human	genbank	57_37b	-1	reviewed	missense	c.89	p.K30R	0.002	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_dNK	-		
WDR81	124997	genome.wustl.edu	37	17	1639458	1639458	+	Silent	SNP	A	G	G	rs11549259	byCluster;by2Hit2Allele;by1000genomes	TCGA-AN-A04A-01A-21W-A050-09	TCGA-AN-A04A-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	1639458	1639458	A	G	SNP	WDR81	ENST00000409644	human	ensembl	57_37b	+1	known	silent	c.5451	p.T1817	0.024	superfamily_WD40 repeat-like,HMMSmart_SM00320	superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,PatternScan_FBPASE,HMMSmart_SM00320,HMMPfam_WD40	-		
