Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAMTS16	170690	genome.wustl.edu	37	5	5232546	5232546	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	5232546	5232546	G	T	SNP	ADAMTS16	NM_139056	human	genbank	57_37b	+1	reviewed	missense	c.1767	p.W589C	1.000	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,PatternScan_CARBAMOYLTRANSFERASE,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	-	no_errors	
ANKRD26	22852	genome.wustl.edu	37	10	27326932	27326932	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	27326932	27326932	A	G	SNP	ANKRD26	NM_014915	human	genbank	57_37b	-1	validated	silent	c.2427	p.Y809	0.003	NULL	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors	
CATSPERB	79820	genome.wustl.edu	37	14	92047238	92047238	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	92047238	92047238	C	G	SNP	CATSPERB	NM_024764	human	genbank	57_37b	-1	validated	missense	c.3346	p.E1116Q	0.000	NULL	NULL	-	no_errors	
CBL	867	genome.wustl.edu	37	11	119103160	119103160	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	119103160	119103160	G	T	SNP	CBL	NM_005188	human	genbank	57_37b	+1	reviewed	silent	c.198	p.V66	1.000	HMMPfam_Cbl_N,superfamily_Adaptor_Cbl_N	HMMPfam_Cbl_N,superfamily_Adaptor_Cbl_N,HMMPfam_Cbl_N2,superfamily_SSF47473,HMMPfam_Cbl_N3,superfamily_SSF55550,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_UBA,HMMSmart_UBA	-	no_errors	
CCDC69	26112	genome.wustl.edu	37	5	150565026	150565026	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	150565026	150565026	C	T	SNP	CCDC69	NM_015621	human	genbank	57_37b	-1	validated	missense	c.572	p.R191H	0.998	NULL	NULL	-	no_errors	
CTPS2	56474	genome.wustl.edu	37	X	16685675	16685675	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	16685675	16685675	C	T	SNP	CTPS2	NM_001144002	human	genbank	57_37b	-1	reviewed	missense	c.1258	p.D420N	0.987	superfamily_Class I glutamine amidotransferase-like,HMMPfam_GATase	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_CTP_synth_N,superfamily_Class I glutamine amidotransferase-like,HMMPfam_GATase	-	no_errors	
CYP2A6	1548	genome.wustl.edu	37	19	41351269	41351269	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41351269	41351269	T	G	SNP	CYP2A6	NM_000762	human	genbank	57_37b	-1	reviewed	missense	c.1091	p.D364A	0.660	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors	
CYP4F12	66002	genome.wustl.edu	37	19	15807003	15807003	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15807003	15807003	C	T	SNP	CYP4F12	NM_023944	human	genbank	57_37b	+1	reviewed	missense	c.1282	p.H428Y	1.000	superfamily_Cytochrome P450,HMMPfam_p450	superfamily_Cytochrome P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	-	no_errors	
CYP4F12	66002	genome.wustl.edu	37	19	15807308	15807308	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15807308	15807308	C	G	SNP	CYP4F12	NM_023944	human	genbank	57_37b	+1	reviewed	missense	c.1383	p.F461L	1.000	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors	
CYP4F12	66002	genome.wustl.edu	37	19	15807835	15807835	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15807835	15807835	C	G	SNP	CYP4F12	NM_023944	human	genbank	57_37b	+1	reviewed	missense	c.1515	p.I505M	0.956	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors	
DNAH1	25981	genome.wustl.edu	37	3	52404636	52404636	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52404636	52404636	G	A	SNP	DNAH1	NM_015512	human	genbank	57_37b	+1	validated	silent	c.6402	p.K2134	0.999	NULL	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
DSCAML1	57453	genome.wustl.edu	37	11	117374631	117374631	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	117374631	117374631	C	A	SNP	DSCAML1	NM_020693	human	genbank	57_37b	-1	provisional	missense	c.2468	p.G823V	1.000	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
ENSG00000224625	0	genome.wustl.edu	37	1	242223171	242223171	+	Splice_Site	SNP	G	G	A	rs908969	byCluster;by1000genomes	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	242223171	242223171	G	A	SNP	ENSG00000224625	ENST00000428444	human	ensembl	57_37b	+1	known	splice_site	c.NULL	NULL	1.000	-	-	-		
EPHB1	2047	genome.wustl.edu	37	3	134644715	134644715	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	134644715	134644715	C	T	SNP	EPHB1	NM_004441	human	genbank	57_37b	+1	reviewed	missense	c.116	p.A39V	0.588	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors	
FAM20A	54757	genome.wustl.edu	37	17	66533795	66533795	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	66533795	66533795	T	G	SNP	FAM20A	NM_017565	human	genbank	57_37b	-1	validated	missense	c.1449	p.E483D	0.004	HMMPfam_DUF1193	HMMPfam_DUF1193	-	no_errors	
FBXL18	80028	genome.wustl.edu	37	7	5540158	5540158	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	5540158	5540158	G	T	SNP	FBXL18	NM_024963	human	genbank	57_37b	-1	validated	nonsense	c.1742	p.S581*	0.009	superfamily_SSF52047	superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52047	-	no_errors	
FSD2	123722	genome.wustl.edu	37	15	83455730	83455730	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	83455730	83455730	C	A	SNP	FSD2	NM_001007122	human	genbank	57_37b	-1	provisional	missense	c.413	p.G138V	0.077	NULL	HMMSmart_FN3,HMMPfam_fn3,superfamily_FN_III-like,HMMPfam_SPRY	-	no_errors	
FUT3	2525	genome.wustl.edu	37	19	5844460	5844460	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	5844460	5844460	G	A	SNP	FUT3	NM_000149	human	genbank	57_37b	-1	reviewed	missense	c.391	p.R131C	1.000	HMMPfam_Glyco_transf_10	HMMPfam_Glyco_transf_10	-	no_errors	
GABBR1	2550	genome.wustl.edu	37	6	29576393	29576393	+	Missense_Mutation	SNP	A	A	G	rs113997063	byCluster;by1000genomes	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	29576393	29576393	A	G	SNP	GABBR1	ENST00000485026	human	ensembl	57_37b	-1	known	missense	c.118	p.S40P	1.000	HMMPfam_7tm_3	HMMPfam_7tm_3	-		
GATA3	2625	genome.wustl.edu	37	10	8111507	8111508	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8111507	8111508	-	G	INS	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.996_997	p.A332fs	0.872:1.000	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors	
IGF1R	3480	genome.wustl.edu	37	15	99440131	99440131	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	99440131	99440131	G	T	SNP	IGF1R	NM_000875	human	genbank	57_37b	+1	reviewed	missense	c.1099	p.G367W	1.000	superfamily_SSF52058,HMMPfam_Recep_L_domain	superfamily_SSF52058,HMMPfam_Recep_L_domain,HMMPfam_Furin-like,superfamily_Grow_fac_recept,HMMSmart_FU,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	-	no_errors	
KIF21A	55605	genome.wustl.edu	37	12	39764027	39764027	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	39764027	39764027	T	C	SNP	KIF21A	NM_017641	human	genbank	57_37b	-1	validated	silent	c.81	p.G27	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_WD40 repeat-like,superfamily_Prefoldin,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
KIF2B	84643	genome.wustl.edu	37	17	51901125	51901125	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	51901125	51901125	T	C	SNP	KIF2B	NM_032559	human	genbank	57_37b	+1	validated	missense	c.731	p.V244A	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors	
LOC644717	644717	genome.wustl.edu	37	X	134814919	134814919	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	134814919	134814919	G	T	SNP	LOC644717	XM_002343850	human	genbank	57_37b	-1	model	missense	c.281	p.S94Y	0.000	NULL	NULL	-	no_errors	
LOC729862	729862	genome.wustl.edu	37	5	28927399	28927399	+	RNA	SNP	T	T	A	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	28927399	28927399	T	A	SNP	LOC729862	XR_040872	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.300	-	-	-	no_errors	
MUC17	140453	genome.wustl.edu	37	7	100676850	100676850	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100676850	100676850	C	T	SNP	MUC17	NM_001040105	human	genbank	57_37b	+1	provisional	missense	c.2153	p.P718L	0.001	NULL	superfamily_EGF/Laminin,PatternScan_EGF_1,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors	
MUC4	4585	genome.wustl.edu	37	3	195511668	195511668	+	Silent	SNP	G	G	A	rs3107748	byCluster;by2Hit2Allele;byHapMap	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	195511668	195511668	G	A	SNP	MUC4	NM_018406	human	genbank	57_37b	-1	reviewed	silent	c.6783	p.D2261	0.004	NULL	HMMSmart_SM00539,HMMPfam_NIDO,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00723,HMMPfam_AMOP,HMMSmart_SM00216,HMMPfam_VWD,PatternScan_EGF_1,HMMSmart_SM00181,superfamily_EGF/Laminin	-		
MYO1A	4640	genome.wustl.edu	37	12	57431753	57431753	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57431753	57431753	G	A	SNP	MYO1A	NM_005379	human	genbank	57_37b	-1	reviewed	nonsense	c.1861	p.R621*	1.000	HMMSmart_MYSc,superfamily_SSF52540,HMMPfam_Myosin_head	HMMSmart_MYSc,superfamily_SSF52540,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_TH1	-	no_errors	
NDST4	64579	genome.wustl.edu	37	4	115997884	115997884	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	115997884	115997884	T	G	SNP	NDST4	NM_022569	human	genbank	57_37b	-1	provisional	silent	c.309	p.R103	0.857	NULL	superfamily_SSF52540,HMMPfam_Sulfotransfer_1	-	no_errors	
NEBL	10529	genome.wustl.edu	37	10	21186081	21186081	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	21186081	21186081	T	C	SNP	NEBL	NM_006393	human	genbank	57_37b	-1	validated	missense	c.54	p.I18M	0.007	NULL	HMMSmart_SM00227,HMMPfam_Nebulin,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
NR2C2	7182	genome.wustl.edu	37	3	15064743	15064743	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	15064743	15064743	G	T	SNP	NR2C2	NM_003298	human	genbank	57_37b	+1	validated	missense	c.650	p.R217L	1.000	superfamily_Glucocorticoid receptor-like (DNA-binding domain),superfamily_Nuclear receptor ligand-binding domain	HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors	
OGFR	11054	genome.wustl.edu	37	20	61444629	61444629	+	Silent	SNP	A	A	G	rs34441521	byCluster;byFrequency	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61444629	61444629	A	G	SNP	OGFR	NM_007346	human	genbank	57_37b	+1	reviewed	silent	c.1662	p.P554	0.000	HMMPfam_OGFr_III	HMMPfam_OGFr_N,HMMPfam_OGFr_III	-		
OR1L6	392390	genome.wustl.edu	37	9	125512715	125512715	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	125512715	125512715	C	A	SNP	OR1L6	NM_001004453	human	genbank	57_37b	+1	validated	missense	c.697	p.Q233K	0.071	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
OR52K1	390036	genome.wustl.edu	37	11	4510538	4510538	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4510538	4510538	G	A	SNP	OR52K1	NM_001005171	human	genbank	57_37b	+1	validated	silent	c.408	p.T136	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OTUD4	54726	genome.wustl.edu	37	4	146076764	146076764	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	146076764	146076764	G	C	SNP	OTUD4	NM_001102653	human	genbank	57_37b	-1	reviewed	silent	c.570	p.V190	0.997	NULL	superfamily_SSF54001,HMMPfam_OTU	-	no_errors	
PIK3CB	5291	genome.wustl.edu	37	3	138453537	138453537	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	138453537	138453537	A	C	SNP	PIK3CB	NM_006219	human	genbank	57_37b	-1	provisional	missense	c.911	p.I304R	1.000	NULL	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PLOD3	8985	genome.wustl.edu	37	7	100855927	100855927	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100855927	100855927	G	A	SNP	PLOD3	NM_001084	human	genbank	57_37b	-1	reviewed	missense	c.889	p.R297W	1.000	NULL	HMMSmart_SM00702,HMMPfam_2OG-FeII_Oxy,PatternScan_LYS_HYDROXYLASE	-	no_errors	
PPIB	5479	genome.wustl.edu	37	15	64454237	64454238	+	Splice_Site	INS	-	-	A	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	64454237	64454238	-	A	INS	PPIB	NM_000942	human	genbank	57_37b	-1	reviewed	splice_site_ins	c.249+2_249+1	e2+2	1.000:1.000	-	-	-	no_errors	
PRDM10	56980	genome.wustl.edu	37	11	129827805	129827805	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	129827805	129827805	C	A	SNP	PRDM10	NM_020228	human	genbank	57_37b	-1	reviewed	missense	c.70	p.V24L	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
RASGRF1	5923	genome.wustl.edu	37	15	79298697	79298697	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	79298697	79298697	G	A	SNP	RASGRF1	NM_002891	human	genbank	57_37b	-1	reviewed	missense	c.1945	p.R649C	1.000	superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF	-	no_errors	
RBBP5	5929	genome.wustl.edu	37	1	205069184	205069184	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	205069184	205069184	C	T	SNP	RBBP5	NM_005057	human	genbank	57_37b	-1	reviewed	nonsense	c.761	p.W254*	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors	
RBM16	22828	genome.wustl.edu	37	6	155154411	155154411	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	155154411	155154411	A	T	SNP	RBM16	NM_014892	human	genbank	57_37b	+1	validated	missense	c.3698	p.D1233V	1.000	NULL	superfamily_ENTH_VHS,HMMSmart_RPR,HMMPfam_DUF618,superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors	
RNF113A	7737	genome.wustl.edu	37	X	119004955	119004955	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	119004955	119004955	T	C	SNP	RNF113A	NM_006978	human	genbank	57_37b	-1	validated	missense	c.622	p.T208A	1.000	superfamily_SSF90229,HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH	superfamily_SSF90229,HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors	
RNF135	84282	genome.wustl.edu	37	17	29325889	29325889	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	29325889	29325889	G	T	SNP	RNF135	NM_032322	human	genbank	57_37b	+1	reviewed	missense	c.979	p.V327F	0.957	HMMPfam_SPRY	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMSmart_PRY,HMMPfam_SPRY	-	no_errors	
ROBO2	6092	genome.wustl.edu	37	3	77684051	77684051	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	77684051	77684051	G	A	SNP	ROBO2	NM_002942	human	genbank	57_37b	+1	reviewed	missense	c.3791	p.R1264Q	1.000	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
RUNX1T1	862	genome.wustl.edu	37	8	93029469	93029469	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	93029469	93029469	A	G	SNP	RUNX1T1	NM_175634	human	genbank	57_37b	-1	reviewed	missense	c.211	p.F71L	1.000	NULL	HMMPfam_TAFH,HMMSmart_SM00549,HMMPfam_NHR2,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1	-	no_errors	
SIGLEC8	27181	genome.wustl.edu	37	19	51960729	51960729	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51960729	51960729	C	T	SNP	SIGLEC8	NM_014442	human	genbank	57_37b	-1	validated	missense	c.719	p.R240H	0.000	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig	-	no_errors	
SLC22A20	440044	genome.wustl.edu	37	11	64981853	64981853	+	Missense_Mutation	SNP	G	G	T	rs239259	byCluster;byFrequency;by1000genomes	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64981853	64981853	G	T	SNP	SLC22A20	NM_001004326	human	genbank	57_37b	+1	validated	missense	c.438	p.M146I	1.000	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter	-		
SLC25A10	1468	genome.wustl.edu	37	17	79682558	79682558	+	Silent	SNP	T	T	C	rs2072700	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79682558	79682558	T	C	SNP	SLC25A10	NM_012140	human	genbank	57_37b	+1	provisional	silent	c.264	p.R88	0.000	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-		
SLC35B4	84912	genome.wustl.edu	37	7	133986554	133986554	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	133986554	133986554	C	T	SNP	SLC35B4	NM_032826	human	genbank	57_37b	-1	validated	missense	c.446	p.S149N	0.770	HMMPfam_UAA	HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE	-	no_errors	
SSPO	23145	genome.wustl.edu	37	7	149511985	149511985	+	Missense_Mutation	SNP	A	A	G	rs10952230	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	149511985	149511985	A	G	SNP	SSPO	ENST00000378016	human	ensembl	57_37b	+1	known	missense	c.10535	p.N3512S	0.190	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_VWC,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_BPTI_KUNITZ_1,PatternScan_GLYCO_HORMONE_BETA_1,PatternScan_EGF_1,PatternScan_VWFC_1	-		
SSTR4	6754	genome.wustl.edu	37	20	23016933	23016933	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	23016933	23016933	C	T	SNP	SSTR4	NM_001052	human	genbank	57_37b	+1	validated	silent	c.813	p.C271	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
TBCD	6904	genome.wustl.edu	37	17	80895933	80895933	+	Missense_Mutation	SNP	A	A	G	rs3785522	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	80895933	80895933	A	G	SNP	TBCD	NM_005993	human	genbank	57_37b	+1	reviewed	missense	c.3290	p.E1097G	0.973	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-		
TBK1	29110	genome.wustl.edu	37	12	64878170	64878170	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	64878170	64878170	C	G	SNP	TBK1	NM_013254	human	genbank	57_37b	+1	reviewed	silent	c.1080	p.V360	0.951	NULL	HMMPfam_Pkinase,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP	-	no_errors	
TC2N	123036	genome.wustl.edu	37	14	92249447	92249447	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	92249447	92249447	A	T	SNP	TC2N	NM_001128595	human	genbank	57_37b	-1	validated	silent	c.1470	p.S490	0.993	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors	
TEKT5	146279	genome.wustl.edu	37	16	10783833	10783833	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	10783833	10783833	A	G	SNP	TEKT5	NM_144674	human	genbank	57_37b	-1	provisional	missense	c.614	p.L205S	1.000	HMMPfam_Tektin	HMMPfam_Tektin	-	no_errors	
TNR	7143	genome.wustl.edu	37	1	175348868	175348868	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	175348868	175348868	C	T	SNP	TNR	NM_003285	human	genbank	57_37b	-1	validated	missense	c.1783	p.D595N	1.000	HMMPfam_fn3,HMMSmart_SM00060	PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_EGF/Laminin,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like	-	no_errors	
TSR1	55720	genome.wustl.edu	37	17	2235542	2235542	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	2235542	2235542	C	G	SNP	TSR1	NM_018128	human	genbank	57_37b	-1	validated	missense	c.1417	p.E473Q	1.000	NULL	HMMPfam_AARP2CN,HMMSmart_AARP2CN,HMMPfam_DUF663	-	no_errors	
TTC7A	57217	genome.wustl.edu	37	2	47256405	47256405	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	47256405	47256405	C	T	SNP	TTC7A	NM_020458	human	genbank	57_37b	+1	validated	missense	c.1684	p.R562C	0.945	superfamily_TPR-like	superfamily_TPR-like,HMMSmart_SM00028,HMMPfam_TPR_1,HMMPfam_TPR_2	-	no_errors	
ZNF724P	440519	genome.wustl.edu	37	19	23406636	23406636	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	23406636	23406636	C	-	DEL	ZNF724P	ENST00000418100	human	ensembl	57_37b	-1	known	frame_shift_del	c.411	p.T138fs	0.000	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[23405187,23406820])	no_errors	
ZNF76	7629	genome.wustl.edu	37	6	35260506	35260506	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AN-A0AM-01A-11W-A050-09	TCGA-AN-A0AM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	35260506	35260506	C	T	SNP	ZNF76	ENST00000417184	human	ensembl	57_37b	+1	known	splice_site	c.1105+2	e9+2	0.937	-	-	-	no_errors	
