Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCA9	10350	genome.wustl.edu	37	17	67039671	67039671	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	67039671	67039671	C	T	SNP	ABCA9	NM_080283	human	genbank	57_37b	-1	reviewed	silent	c.759	p.T253	0.001	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	-	no_errors	
ABCC1	4363	genome.wustl.edu	37	16	16146590	16146590	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	16146590	16146590	C	G	SNP	ABCC1	NM_004996	human	genbank	57_37b	+1	reviewed	missense	c.1390	p.P464A	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_PROTEIN_KINASE_ATP,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ABCC9	10060	genome.wustl.edu	37	12	21981950	21981959	+	Frame_Shift_Del	DEL	GTATCCGTCA	GTATCCGTCA	-	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	GTATCCGTCA	GTATCCGTCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	21981950	21981959	GTATCCGTCA	-	DEL	ABCC9	NM_005691	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.3611_3602	p.L1201fs	1.000:1.000:1.000:1.000:1.000:0.134:1.000:1.000:1.000:1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	(deletion:cds_exon[21981892,21981994])	no_errors	
ABCC9	10060	genome.wustl.edu	37	12	22028614	22028614	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	22028614	22028614	G	C	SNP	ABCC9	NM_005691	human	genbank	57_37b	-1	reviewed	missense	c.2066	p.S689C	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ACADVL	37	genome.wustl.edu	37	17	7127320	7127320	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7127320	7127320	C	T	SNP	ACADVL	NM_000018	human	genbank	57_37b	+1	reviewed	missense	c.1366	p.R456C	1.000	HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like	superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,PatternScan_ACYL_COA_DH_2	-	no_errors	
ADK	132	genome.wustl.edu	37	10	75960544	75960544	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	75960544	75960544	G	T	SNP	ADK	NM_006721	human	genbank	57_37b	+1	reviewed	nonsense	c.88	p.G30*	1.000	superfamily_Ribokinase-like	superfamily_Ribokinase-like,HMMPfam_PfkB,PatternScan_PFKB_KINASES_2	-	no_errors	
ANO5	203859	genome.wustl.edu	37	11	22294380	22294381	+	Frame_Shift_Del	DEL	CC	CC	-	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	CC	CC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	22294380	22294381	CC	-	DEL	ANO5	NM_213599	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2080_2081	p.P694fs	1.000:1.000	HMMPfam_DUF590	HMMPfam_DUF590	(deletion:cds_exon[22294330,22294535])	no_errors	
B4GALNT3	283358	genome.wustl.edu	37	12	661326	661326	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	661326	661326	A	T	SNP	B4GALNT3	NM_173593	human	genbank	57_37b	+1	validated	missense	c.1205	p.D402V	1.000	NULL	HMMSmart_SM00758,HMMPfam_PA14,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors	
BMP4	652	genome.wustl.edu	37	14	54417573	54417573	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	54417573	54417573	T	A	SNP	BMP4	NM_001202	human	genbank	57_37b	-1	reviewed	missense	c.404	p.N135I	0.896	HMMPfam_TGFb_propeptide	HMMPfam_TGFb_propeptide,superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1	-	no_errors	
BMPER	168667	genome.wustl.edu	37	7	34097695	34097695	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	34097695	34097695	A	C	SNP	BMPER	NM_133468	human	genbank	57_37b	+1	validated	missense	c.952	p.N318H	0.997	HMMPfam_VWC,HMMSmart_VWC	HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_VWD,HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,HMMPfam_TIL	-	no_errors	
C10orf26	54838	genome.wustl.edu	37	10	104557756	104557756	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	104557756	104557756	G	A	SNP	C10orf26	NM_001083913	human	genbank	57_37b	+1	validated	missense	c.97	p.E33K	1.000	NULL	NULL	-	no_errors	
C17orf53	78995	genome.wustl.edu	37	17	42225520	42225520	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42225520	42225520	G	C	SNP	C17orf53	NM_024032	human	genbank	57_37b	+1	validated	missense	c.349	p.V117L	0.013	NULL	NULL	-	no_errors	
C1GALT1	56913	genome.wustl.edu	37	7	7274170	7274170	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	7274170	7274170	G	A	SNP	C1GALT1	NM_020156	human	genbank	57_37b	+1	validated	missense	c.220	p.D74N	1.000	NULL	NULL	-	no_errors	
C5orf44	80006	genome.wustl.edu	37	5	64920772	64920773	+	RNA	INS	-	-	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	64920772	64920773	-	G	INS	C5orf44	NR_003545	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	
CCAR1	55749	genome.wustl.edu	37	10	70531055	70531055	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	70531055	70531055	G	C	SNP	CCAR1	NM_018237	human	genbank	57_37b	+1	validated	missense	c.2391	p.E797D	1.000	NULL	superfamily_SAP domain,HMMPfam_SAP,HMMSmart_SM00513,superfamily_EF-hand	-	no_errors	
CD163L1	283316	genome.wustl.edu	37	12	7556211	7556211	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	7556211	7556211	G	T	SNP	CD163L1	NM_174941	human	genbank	57_37b	-1	reviewed	nonsense	c.1328	p.S443*	0.989	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1	-	no_errors	
CDK5RAP2	55755	genome.wustl.edu	37	9	123280815	123280815	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	123280815	123280815	T	G	SNP	CDK5RAP2	NM_018249	human	genbank	57_37b	-1	reviewed	missense	c.1201	p.I401L	0.006	NULL	HMMPfam_Microtub_assoc	-	no_errors	
CFHR4	10877	genome.wustl.edu	37	1	196879568	196879568	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	196879568	196879568	C	A	SNP	CFHR4	ENST00000367418	human	ensembl	57_37b	+1	known	missense	c.216	p.H72Q	0.011	superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	-	no_errors	
COL14A1	7373	genome.wustl.edu	37	8	121170400	121170400	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	121170400	121170400	A	G	SNP	COL14A1	NM_021110	human	genbank	57_37b	+1	validated	silent	c.120	p.V40	0.029	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen	-	no_errors	
CPEB3	22849	genome.wustl.edu	37	10	93952303	93952303	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	93952303	93952303	C	G	SNP	CPEB3	NM_014912	human	genbank	57_37b	-1	validated	missense	c.1096	p.G366R	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors	
CPN2	1370	genome.wustl.edu	37	3	194062839	194062839	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	194062839	194062839	A	T	SNP	CPN2	NM_001080513	human	genbank	57_37b	-1	validated	missense	c.593	p.L198Q	0.997	superfamily_RNI-like,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_RNI-like,HMMSmart_SM00369,HMMSmart_SM00364,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT	-	no_errors	
CYP3A4	1576	genome.wustl.edu	37	7	99358487	99358487	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99358487	99358487	G	T	SNP	CYP3A4	NM_017460	human	genbank	57_37b	-1	reviewed	silent	c.1371	p.I457	0.000	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors	
DENND1A	57706	genome.wustl.edu	37	9	126371761	126371761	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	126371761	126371761	C	G	SNP	DENND1A	NM_020946	human	genbank	57_37b	-1	validated	splice_site	c.720-1	e11-1	1.000	-	-	-	no_errors	
DUSP27	92235	genome.wustl.edu	37	1	167095371	167095371	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	167095371	167095371	G	T	SNP	DUSP27	NM_001080426	human	genbank	57_37b	+1	provisional	missense	c.1003	p.A335S	1.000	NULL	PatternScan_TYR_PHOSPHATASE_1,superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc	-	no_errors	
DYNC2H1	79659	genome.wustl.edu	37	11	103014002	103014002	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	103014002	103014002	G	T	SNP	DYNC2H1	NM_001080463	human	genbank	57_37b	+1	reviewed	missense	c.2580	p.W860C	1.000	NULL	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
ELTD1	64123	genome.wustl.edu	37	1	79383583	79383583	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	79383583	79383583	A	G	SNP	ELTD1	NM_022159	human	genbank	57_37b	-1	validated	silent	c.1614	p.Y538	0.996	HMMPfam_7tm_2	HMMSmart_EGF,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,superfamily_SSF57196,PatternScan_ASX_HYDROXYL,PatternScan_EF_HAND_1,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	
ENSG00000154898	0	genome.wustl.edu	37	17	20268786	20268786	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	20268786	20268786	C	A	SNP	ENSG00000154898	ENST00000425519	human	ensembl	57_37b	+1	known	missense	c.2245	p.L749I	0.821	NULL	NULL	-	no_errors	
ENSG00000166763	0	genome.wustl.edu	37	15	44004786	44004786	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	44004786	44004786	C	T	SNP	ENSG00000166763	ENST00000381686	human	ensembl	57_37b	-1	known	nonsense	c.2586	p.W862*	1.000	NULL	NULL	-	no_errors	
ENSG00000197025	0	genome.wustl.edu	37	19	56888646	56888646	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56888646	56888646	C	G	SNP	ENSG00000197025	ENST00000356456	human	ensembl	57_37b	+1	known	missense	c.31	p.H11D	0.559	superfamily_C2H2 and C2HC zinc fingers	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ENSG00000200463	0	genome.wustl.edu	37	17	8076904	8076904	+	RNA	SNP	G	G	T	rs117735243	by1000genomes	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	8076904	8076904	G	T	SNP	ENSG00000200463	ENST00000363593	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	1.000	-	-	-		
ENSG00000220997	0	genome.wustl.edu	37	10	30654008	30654060	+	RNA	DEL	CAGGGCTCAGATGCTGGGGCCCCTCCGATGGCCCTGCAGCTCCCCCTGCCTTC	CAGGGCTCAGATGCTGGGGCCCCTCCGATGGCCCTGCAGCTCCCCCTGCCTTC	-	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	CAGGGCTCAGATGCTGGGGCCCCTCCGATGGCCCTGCAGCTCCCCCTGCCTTC	CAGGGCTCAGATGCTGGGGCCCCTCCGATGGCCCTGCAGCTCCCCCTGCCTTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	30654008	30654060	CAGGGCTCAGATGCTGGGGCCCCTCCGATGGCCCTGCAGCTCCCCCTGCCTTC	-	DEL	ENSG00000220997	ENST00000408070	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.184:0.181:0.177:0.037:0.035:0.037:0.037:0.037:0.045:0.053:0.058:0.053:0.057:0.052:0.044:0.053:0.058:0.043:0.051:0.115:0.143:0.146:0.132:0.121:0.097:0.015:0.002:0.001:0.001:0.003:0.003:0.005:0.002:0.001:0.008:0.010:0.020:0.020:0.015:0.014:0.013:0.012:0.002:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.002	-	-	(deletion:rna[30653996,30654077])	no_errors	
ENSG00000223128	0	genome.wustl.edu	37	20	21405383	21405384	+	RNA	INS	-	-	TCTCT	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	21405383	21405384	-	TCTCT	INS	ENSG00000223128	ENST00000411196	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.002:0.002	-	-	-	no_errors	
ENSG00000228637	0	genome.wustl.edu	37	10	42396414	42396414	+	RNA	SNP	C	C	T	rs74188746	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	42396414	42396414	C	T	SNP	ENSG00000228637	ENST00000439345	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.000	-	-	-		
ENSG00000245841	0	genome.wustl.edu	37	6	79911588	79911588	+	RNA	SNP	G	G	C	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	79911588	79911588	G	C	SNP	ENSG00000245841	ENST00000501415	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	
ENTPD7	57089	genome.wustl.edu	37	10	101451204	101451204	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	101451204	101451204	G	T	SNP	ENTPD7	NM_020354	human	genbank	57_37b	+1	validated	missense	c.772	p.D258Y	1.000	HMMPfam_GDA1_CD39	HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE	-	no_errors	
EPB41L3	23136	genome.wustl.edu	37	18	5406867	5406867	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	5406867	5406867	T	C	SNP	EPB41L3	NM_012307	human	genbank	57_37b	-1	provisional	missense	c.2258	p.N753S	0.857	HMMPfam_SAB	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA,HMMPfam_SAB,HMMPfam_4_1_CTD	-	no_errors	
FAM111A	63901	genome.wustl.edu	37	11	58919851	58919853	+	In_Frame_Del	DEL	ATG	ATG	-	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	ATG	ATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	58919851	58919853	ATG	-	DEL	FAM111A	NM_001142519	human	genbank	57_37b	+1	validated	in_frame_del	c.710_712	p.D239in_frame_del	0.003:0.000:0.000	NULL	superfamily_Pept_Ser_Cys	(deletion:cds_exon[58919223,58920977])	no_errors	
FASTKD1	79675	genome.wustl.edu	37	2	170393757	170393757	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	170393757	170393757	G	C	SNP	FASTKD1	NM_024622	human	genbank	57_37b	-1	validated	missense	c.2168	p.T723R	1.000	HMMPfam_FAST_2	HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP	-	no_errors	
FASTKD3	79072	genome.wustl.edu	37	5	7867856	7867856	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	7867856	7867856	T	A	SNP	FASTKD3	NM_024091	human	genbank	57_37b	-1	validated	missense	c.341	p.E114V	0.988	NULL	HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP	-	no_errors	
FBXO18	84893	genome.wustl.edu	37	10	5951233	5951233	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	5951233	5951233	C	A	SNP	FBXO18	NM_032807	human	genbank	57_37b	+1	reviewed	silent	c.1149	p.L383	0.161	NULL	superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52540	-	no_errors	
FCN2	2220	genome.wustl.edu	37	9	137774483	137774483	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	137774483	137774483	G	C	SNP	FCN2	NM_004108	human	genbank	57_37b	+1	reviewed	missense	c.212	p.R71T	0.043	HMMPfam_Collagen	HMMPfam_Collagen,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like,PatternScan_FIBRIN_AG_C_DOMAIN	-	no_errors	
FKBP15	23307	genome.wustl.edu	37	9	115983521	115983521	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	115983521	115983521	C	T	SNP	FKBP15	NM_015258	human	genbank	57_37b	-1	validated	missense	c.3	p.M1I	1.000	NULL	superfamily_FKBP-like,HMMPfam_FKBP_C	-	no_errors	
FUBP1	8880	genome.wustl.edu	37	1	78414864	78414864	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	78414864	78414864	C	T	SNP	FUBP1	NM_003902	human	genbank	57_37b	-1	reviewed	missense	c.1902	p.M634I	1.000	NULL	superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1,HMMPfam_DUF1897	-	no_errors	
FUT3	2525	genome.wustl.edu	37	19	5844141	5844141	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	5844141	5844141	G	A	SNP	FUT3	NM_000149	human	genbank	57_37b	-1	reviewed	missense	c.710	p.T237M	0.000	HMMPfam_Glyco_transf_10	HMMPfam_Glyco_transf_10	-	no_errors	
GALNT9	50614	genome.wustl.edu	37	12	132685675	132685675	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	132685675	132685675	G	A	SNP	GALNT9	ENST00000328957	human	ensembl	57_37b	-1	known	silent	c.1395	p.Y465	1.000	superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,PatternScan_WW_DOMAIN_1,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458	-	no_errors	
GDF3	9573	genome.wustl.edu	37	12	7842748	7842748	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	7842748	7842748	C	T	SNP	GDF3	NM_020634	human	genbank	57_37b	-1	reviewed	missense	c.821	p.R274Q	0.891	superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB	superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-	no_errors	
GPR98	84059	genome.wustl.edu	37	5	89949195	89949195	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	89949195	89949195	C	A	SNP	GPR98	NM_032119	human	genbank	57_37b	+1	reviewed	missense	c.3804	p.N1268K	1.000	NULL	HMMSmart_SM00237,HMMPfam_Calx-beta,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EPTP,PatternScan_A_DEAMINASE,PatternScan_LIPOYL,HMMPfam_GPS	-	no_errors	
GRM5	2915	genome.wustl.edu	37	11	88780577	88780577	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	88780577	88780577	G	A	SNP	GRM5	NM_001143831	human	genbank	57_37b	-1	reviewed	missense	c.464	p.A155V	1.000	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3,HMMPfam_GluR_Homer-bdg	-	no_errors	
GZMA	3001	genome.wustl.edu	37	5	54398559	54398559	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	54398559	54398559	T	C	SNP	GZMA	NM_006144	human	genbank	57_37b	+1	reviewed	missense	c.49	p.S17P	0.812	NULL	HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
HEPHL1	341208	genome.wustl.edu	37	11	93839282	93839282	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	93839282	93839282	A	G	SNP	HEPHL1	NM_001098672	human	genbank	57_37b	+1	validated	missense	c.3031	p.S1011G	1.000	superfamily_Cupredoxin,HMMPfam_Cu-oxidase_2	superfamily_Cupredoxin,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase_2,PatternScan_MULTICOPPER_OXIDASE1,PatternScan_MULTICOPPER_OXIDASE2	-	no_errors	
HLA-J	0	genome.wustl.edu	37	6	29974685	29974685	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	29974685	29974685	A	G	SNP	HLA-J	ENST00000376791	human	ensembl	57_37b	+1	known	missense	c.173	p.D58G	1.000	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	-	no_errors	
HPSE2	60495	genome.wustl.edu	37	10	100904059	100904059	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	100904059	100904059	A	G	SNP	HPSE2	NM_021828	human	genbank	57_37b	-1	reviewed	silent	c.546	p.A182	1.000	HMMPfam_Glyco_hydro_79n	HMMPfam_Glyco_hydro_79n	-	no_errors	
HTR1E	3354	genome.wustl.edu	37	6	87725628	87725655	+	Frame_Shift_Del	DEL	TATCCCCTTGACTTTGATACTGATTCTC	TATCCCCTTGACTTTGATACTGATTCTC	-	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	TATCCCCTTGACTTTGATACTGATTCTC	TATCCCCTTGACTTTGATACTGATTCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	87725628	87725655	TATCCCCTTGACTTTGATACTGATTCTC	-	DEL	HTR1E	NM_000865	human	genbank	57_37b	+1	validated	frame_shift_del	c.576_603	p.P194fs	1.000:1.000:1.000:1.000:1.000:1.000:0.995:1.000:1.000:1.000:1.000:1.000:0.994:0.999:1.000:1.000:1.000:1.000:0.978:1.000:1.000:0.995:1.000:1.000:1.000:1.000:1.000:0.998	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	(deletion:cds_exon[87725053,87726150])	no_errors	
IGSF8	93185	genome.wustl.edu	37	1	160062779	160062779	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160062779	160062779	C	T	SNP	IGSF8	NM_052868	human	genbank	57_37b	-1	provisional	missense	c.1247	p.G416E	0.994	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409	-	no_errors	
IL17RB	55540	genome.wustl.edu	37	3	53892827	53892827	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	53892827	53892827	C	T	SNP	IL17RB	NM_018725	human	genbank	57_37b	+1	reviewed	missense	c.829	p.P277S	0.000	NULL	HMMPfam_SEFIR	-	no_errors	
ITGAV	3685	genome.wustl.edu	37	2	187540546	187540546	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	187540546	187540546	G	T	SNP	ITGAV	NM_002210	human	genbank	57_37b	+1	reviewed	splice_site	c.2821-1	e28-1	1.000	-	-	-	no_errors	
KCNS2	3788	genome.wustl.edu	37	8	99441462	99441462	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	99441462	99441462	C	T	SNP	KCNS2	NM_020697	human	genbank	57_37b	+1	provisional	missense	c.1255	p.R419C	1.000	superfamily_Voltage-gated potassium channels	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors	
KCNU1	0	genome.wustl.edu	37	8	36768470	36768470	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	36768470	36768470	A	T	SNP	KCNU1	NM_001031836	human	genbank	57_37b	+1	validated	missense	c.2354	p.D785V	1.000	NULL	superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_NAD(P)-bd,HMMPfam_BK_channel_a	-	no_errors	
KDM2B	84678	genome.wustl.edu	37	12	121878934	121878934	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	121878934	121878934	G	T	SNP	KDM2B	NM_032590	human	genbank	57_37b	-1	reviewed	silent	c.3387	p.L1129	0.984	superfamily_RNI-like	superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-CXXC,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_F-box,superfamily_RNI-like,HMMSmart_SM00367	-	no_errors	
KDM5A	5927	genome.wustl.edu	37	12	493214	493214	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	493214	493214	G	T	SNP	KDM5A	NM_001042603	human	genbank	57_37b	-1	reviewed	missense	c.349	p.L117M	1.000	superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501	HMMSmart_SM00545,HMMPfam_JmjN,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-C5HC2,HMMPfam_PLU-1	-	no_errors	
KIR2DS4	3809	genome.wustl.edu	37	19	55350924	55350924	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55350924	55350924	A	G	SNP	KIR2DS4	ENST00000339924	human	ensembl	57_37b	+1	known	missense	c.412	p.T138A	0.000	superfamily_Immunoglobulin	superfamily_Immunoglobulin,HMMPfam_ig	-	no_errors	
KNG1	3827	genome.wustl.edu	37	3	186460074	186460078	+	Frame_Shift_Del	DEL	AAATG	AAATG	-	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	AAATG	AAATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	186460074	186460078	AAATG	-	DEL	KNG1	NM_001102416	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1889_1893	p.M631fs	0.059:0.056:0.011:0.000:0.000	NULL	HMMSmart_SM00043,HMMPfam_Cystatin,superfamily_Cystatin/monellin,PatternScan_CYSTATIN	(deletion:cds_exon[186459311,186460120])	no_errors	
LEPREL1	55214	genome.wustl.edu	37	3	189711948	189711948	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	189711948	189711948	C	A	SNP	LEPREL1	NM_018192	human	genbank	57_37b	-1	validated	missense	c.758	p.G253V	1.000	superfamily_TPR-like	superfamily_TPR-like,HMMSmart_SM00702,HMMPfam_2OG-FeII_Oxy	-	no_errors	
LOC100288050	0	genome.wustl.edu	37	7	37990016	37990016	+	Missense_Mutation	SNP	C	C	T	rs113263924	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	37990016	37990016	C	T	SNP	LOC100288050	XM_002342700	human	genbank	57_37b	-1	model	missense	c.109	p.A37T	0.000	NULL	NULL	-		
LOC646993	646993	genome.wustl.edu	37	9	36304901	36304901	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	36304901	36304901	C	-	DEL	LOC646993	XM_929965	human	genbank	57_37b	-1	model	frame_shift_del	c.21	p.K8fs	0.983	superfamily_HMG-box,HMMPfam_HMG_box,HMMSmart_SM00398	superfamily_HMG-box,HMMPfam_HMG_box,HMMSmart_SM00398	(deletion:cds_exon[36304849,36304921])	no_errors	
LPIN3	64900	genome.wustl.edu	37	20	39980756	39980756	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	39980756	39980756	G	A	SNP	LPIN3	NM_022896	human	genbank	57_37b	+1	validated	missense	c.1259	p.R420K	0.000	NULL	HMMPfam_Lipin_N,superfamily_HAD-like,HMMPfam_LNS2,HMMSmart_SM00775	-	no_errors	
LRRCC1	85444	genome.wustl.edu	37	8	86053669	86053669	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	86053669	86053669	G	C	SNP	LRRCC1	NM_033402	human	genbank	57_37b	+1	validated	missense	c.2893	p.D965H	0.991	NULL	superfamily_Outer arm dynein light chain 1,HMMSmart_SM00365,HMMPfam_LRR_1	-	no_errors	
MALAT1	378938	genome.wustl.edu	37	11	65269607	65269632	+	RNA	DEL	TCTGTTTTCCTTCAAAGTATAGAGCT	TCTGTTTTCCTTCAAAGTATAGAGCT	-	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	TCTGTTTTCCTTCAAAGTATAGAGCT	TCTGTTTTCCTTCAAAGTATAGAGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65269607	65269632	TCTGTTTTCCTTCAAAGTATAGAGCT	-	DEL	MALAT1	NR_002819	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.001:0.002:0.002:0.002:0.004:0.004:0.004:0.002:0.001:0.001:0.000:0.000:0.000:0.000:0.001:0.000:0.000:0.001:0.001	-	-	(deletion:rna[65265233,65273940])	no_errors	
MAP1A	4130	genome.wustl.edu	37	15	43818728	43818728	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	43818728	43818728	G	C	SNP	MAP1A	NM_002373	human	genbank	57_37b	+1	reviewed	missense	c.5057	p.R1686T	0.039	NULL	superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors	
MAP3K5	4217	genome.wustl.edu	37	6	137019731	137019731	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	137019731	137019731	C	G	SNP	MAP3K5	NM_005923	human	genbank	57_37b	-1	reviewed	missense	c.702	p.L234F	1.000	NULL	HMMSmart_S_TKc,HMMPfam_Pkinase,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_SAM_homology	-	no_errors	
MAP3K8	1326	genome.wustl.edu	37	10	30728142	30728142	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	30728142	30728142	C	G	SNP	MAP3K8	NM_005204	human	genbank	57_37b	+1	reviewed	missense	c.275	p.S92C	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMSmart_SM00219,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MCM4	4173	genome.wustl.edu	37	8	48883292	48883292	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	48883292	48883292	G	A	SNP	MCM4	NM_005914	human	genbank	57_37b	+1	reviewed	silent	c.1656	p.E552	1.000	HMMSmart_MCM,HMMPfam_MCM,superfamily_SSF52540,HMMSmart_AAA	superfamily_Nucleic_acid_OB,HMMSmart_MCM,HMMPfam_MCM,superfamily_SSF52540,HMMSmart_AAA,PatternScan_MCM_1	-	no_errors	
MLH3	27030	genome.wustl.edu	37	14	75514596	75514631	+	In_Frame_Del	DEL	CTAGATTCTTTTTTTTTCTCTTTCTCTGTCTGAGCA	CTAGATTCTTTTTTTTTCTCTTTCTCTGTCTGAGCA	-	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	CTAGATTCTTTTTTTTTCTCTTTCTCTGTCTGAGCA	CTAGATTCTTTTTTTTTCTCTTTCTCTGTCTGAGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	75514596	75514631	CTAGATTCTTTTTTTTTCTCTTTCTCTGTCTGAGCA	-	DEL	MLH3	NM_001040108	human	genbank	57_37b	-1	reviewed	in_frame_del	c.1763_1728	p.AQTEKEKKKESS577in_frame_del	0.000:0.000:0.000:0.000:0.000:0.000:0.137:0.142:0.092:0.003:0.001:0.002:0.003:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.000:0.179:0.189:0.206:0.232:0.135:0.137:0.002:0.001:0.002:0.001:0.003:0.001:0.000:0.000:0.003	NULL	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,PatternScan_DNA_MISMATCH_REPAIR_1,superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_DNA_mis_repair,HMMPfam_MutL_C	(deletion:cds_exon[75513079,75516358])	no_errors	
MYCL1	4610	genome.wustl.edu	37	1	40363211	40363211	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	40363211	40363211	T	G	SNP	MYCL1	NM_001033081	human	genbank	57_37b	-1	validated	missense	c.928	p.T310P	1.000	HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353	HMMPfam_Myc_N,HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353	-	no_errors	
MYO10	4651	genome.wustl.edu	37	5	16671552	16671552	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	16671552	16671552	C	T	SNP	MYO10	NM_012334	human	genbank	57_37b	-1	validated	silent	c.5409	p.E1803	0.978	HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M	PatternScan_FERM_1,PatternScan_FERM_2,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_MyTH4,HMMPfam_MyTH4,HMMSmart_B41,HMMPfam_RA,superfamily_FERM_3-hlx,HMMPfam_FERM_M	-	no_errors	
NCKAP5	344148	genome.wustl.edu	37	2	133539679	133539679	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	133539679	133539679	T	A	SNP	NCKAP5	NM_207363	human	genbank	57_37b	-1	validated	missense	c.4705	p.I1569F	0.000	NULL	NULL	-	no_errors	
NFATC4	4776	genome.wustl.edu	37	14	24846878	24846878	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24846878	24846878	C	G	SNP	NFATC4	NM_004554	human	genbank	57_37b	+1	reviewed	missense	c.2676	p.F892L	1.000	NULL	superfamily_p53-like transcription factors,HMMPfam_RHD,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG	-	no_errors	
NLRP3	114548	genome.wustl.edu	37	1	247608079	247608079	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247608079	247608079	C	A	SNP	NLRP3	NM_001079821	human	genbank	57_37b	+1	reviewed	missense	c.2967	p.F989L	0.993	superfamily_SSF52047,HMMSmart_LRR_RI	superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_SSF52047,HMMSmart_LRR_RI,HMMPfam_LRR_1	-	no_errors	
NPAS4	266743	genome.wustl.edu	37	11	66192385	66192385	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66192385	66192385	C	A	SNP	NPAS4	NM_178864	human	genbank	57_37b	+1	validated	nonsense	c.2024	p.S675*	0.177	NULL	HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS_3	-	no_errors	
NR2C2AP	126382	genome.wustl.edu	37	19	19312778	19312778	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19312778	19312778	G	A	SNP	NR2C2AP	NM_176880	human	genbank	57_37b	-1	validated	missense	c.376	p.R126C	0.999	superfamily_Gal_bind_like	superfamily_Gal_bind_like	-	no_errors	
NR2E3	10002	genome.wustl.edu	37	15	72106381	72106381	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	72106381	72106381	C	T	SNP	NR2E3	NM_014249	human	genbank	57_37b	+1	reviewed	silent	c.1023	p.H341	0.744	superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors	
NR3C2	4306	genome.wustl.edu	37	4	149075954	149075954	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	149075954	149075954	C	G	SNP	NR3C2	NM_000901	human	genbank	57_37b	-1	reviewed	missense	c.2113	p.E705Q	0.989	NULL	HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors	
OAS2	4939	genome.wustl.edu	37	12	113440772	113440772	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	113440772	113440772	G	C	SNP	OAS2	NM_016817	human	genbank	57_37b	+1	reviewed	silent	c.1044	p.L348	0.085	superfamily_Nucleotidyltransferase	superfamily_Nucleotidyltransferase,PatternScan_25A_SYNTH_1,HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain,PatternScan_25A_SYNTH_2,HMMPfam_NTP_transf_2	-	no_errors	
OGT	8473	genome.wustl.edu	37	X	70783063	70783071	+	In_Frame_Del	DEL	TCTTGATAG	TCTTGATAG	-	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	TCTTGATAG	TCTTGATAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	70783063	70783071	TCTTGATAG	-	DEL	OGT	NM_181672	human	genbank	57_37b	+1	reviewed	in_frame_del	c.2232_2240	p.DSL746in_frame_del	1.000:1.000:1.000:0.995:1.000:1.000:1.000:1.000:1.000	NULL	superfamily_TPR-like,HMMSmart_SM00028,HMMPfam_TPR_1	(deletion:cds_exon[70782980,70783096])	no_errors	
OR1F1	4992	genome.wustl.edu	37	16	3254611	3254611	+	Missense_Mutation	SNP	A	A	G	rs61731440	by1000genomes	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	3254611	3254611	A	G	SNP	OR1F1	NM_012360	human	genbank	57_37b	+1	provisional	missense	c.365	p.H122R	1.000	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-		
OR4D6	219983	genome.wustl.edu	37	11	59224890	59224890	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	59224890	59224890	G	T	SNP	OR4D6	NM_001004708	human	genbank	57_37b	+1	provisional	missense	c.457	p.G153C	0.001	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR4E2	26686	genome.wustl.edu	37	14	22133652	22133652	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	22133652	22133652	C	T	SNP	OR4E2	NM_001001912	human	genbank	57_37b	+1	validated	missense	c.356	p.A119V	1.000	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR52A1	23538	genome.wustl.edu	37	11	5173461	5173461	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	5173461	5173461	G	T	SNP	OR52A1	NM_012375	human	genbank	57_37b	-1	validated	missense	c.139	p.L47I	0.284	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OSCP1	127700	genome.wustl.edu	37	1	36883811	36883811	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	36883811	36883811	C	G	SNP	OSCP1	NM_145047	human	genbank	57_37b	-1	validated	missense	c.1099	p.E367Q	0.996	NULL	HMMPfam_Oscp1	-	no_errors	
OTOL1	131149	genome.wustl.edu	37	3	161221067	161221067	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	161221067	161221067	T	G	SNP	OTOL1	NM_001080440	human	genbank	57_37b	+1	provisional	silent	c.771	p.G257	0.006	HMMPfam_Collagen	HMMPfam_Collagen,HMMSmart_C1Q,superfamily_TNF_like,HMMPfam_C1q	-	no_errors	
PABPC1	26986	genome.wustl.edu	37	8	101717869	101717869	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	101717869	101717869	C	G	SNP	PABPC1	NM_002568	human	genbank	57_37b	-1	validated	missense	c.1635	p.L545F	1.000	superfamily_PABC (PABP) domain,HMMPfam_PABP	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMSmart_SM00361,superfamily_PABC (PABP) domain,HMMPfam_PABP,HMMSmart_SM00517	-	no_errors	
PDE3A	5139	genome.wustl.edu	37	12	20807084	20807084	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	20807084	20807084	G	A	SNP	PDE3A	NM_000921	human	genbank	57_37b	+1	validated	silent	c.3129	p.E1043	0.998	superfamily_SSF109604	superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors	
PLCZ1	89869	genome.wustl.edu	37	12	18852835	18852835	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	18852835	18852835	G	C	SNP	PLCZ1	NM_033123	human	genbank	57_37b	-1	provisional	missense	c.1067	p.T356R	1.000	superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149	superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors	
PPIG	9360	genome.wustl.edu	37	2	170487451	170487451	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	170487451	170487451	C	T	SNP	PPIG	NM_004792	human	genbank	57_37b	+1	validated	nonsense	c.715	p.R239*	1.000	NULL	superfamily_Cyclophilin-like,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1	-	no_errors	
PPP1R3A	5506	genome.wustl.edu	37	7	113519707	113519707	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	113519707	113519707	T	A	SNP	PPP1R3A	NM_002711	human	genbank	57_37b	-1	reviewed	missense	c.1440	p.K480N	0.036	NULL	HMMPfam_CBM_21	-	no_errors	
PPP1R3A	5506	genome.wustl.edu	37	7	113520011	113520011	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	113520011	113520011	G	A	SNP	PPP1R3A	NM_002711	human	genbank	57_37b	-1	reviewed	missense	c.1136	p.S379L	1.000	NULL	HMMPfam_CBM_21	-	no_errors	
PRKAA2	5563	genome.wustl.edu	37	1	57161777	57161791	+	In_Frame_Del	DEL	CTGATGCATATGCTG	CTGATGCATATGCTG	-	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	CTGATGCATATGCTG	CTGATGCATATGCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	57161777	57161791	CTGATGCATATGCTG	-	DEL	PRKAA2	NM_006252	human	genbank	57_37b	+1	validated	in_frame_del	c.733_747	p.LMHML245in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[57161608,57161832])	no_errors	
PRRT1	80863	genome.wustl.edu	37	6	32119594	32119594	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32119594	32119594	T	C	SNP	PRRT1	NM_030651	human	genbank	57_37b	-1	validated	missense	c.11	p.E4G	0.999	NULL	HMMPfam_CD225	-	no_errors	
PSD	5662	genome.wustl.edu	37	10	104165080	104165106	+	Splice_Site	DEL	CCCCCCGCAACTCGGCCACATACTCTT	CCCCCCGCAACTCGGCCACATACTCTT	-	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	CCCCCCGCAACTCGGCCACATACTCTT	CCCCCCGCAACTCGGCCACATACTCTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	104165080	104165106	CCCCCCGCAACTCGGCCACATACTCTT	-	DEL	PSD	NM_002779	human	genbank	57_37b	-1	provisional	splice_site_del	c.2326+5_2326+1	e12-1	0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.003:0.000:0.000:0.026:0.000:0.000:0.000:0.037:0.093:0.901:1.000:1.000:0.000:0.955:1.000:1.000:1.000:1.000:1.000:1.000	-	-	(deletion:intron[104165011,104165102], cds_exon[104165103,104165293])	no_errors	
PTPRZ1	5803	genome.wustl.edu	37	7	121659211	121659211	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	121659211	121659211	G	T	SNP	PTPRZ1	NM_002851	human	genbank	57_37b	+1	reviewed	missense	c.4877	p.G1626V	1.000	NULL	superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
QPCTL	54814	genome.wustl.edu	37	19	46196806	46196806	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46196806	46196806	G	C	SNP	QPCTL	NM_017659	human	genbank	57_37b	+1	validated	missense	c.343	p.V115L	1.000	superfamily_SSF53187	superfamily_SSF53187,HMMPfam_Peptidase_M28	-	no_errors	
RABGGTA	5875	genome.wustl.edu	37	14	24736910	24736910	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24736910	24736910	T	G	SNP	RABGGTA	NM_004581	human	genbank	57_37b	-1	validated	missense	c.1309	p.K437Q	1.000	superfamily_Prenyl_trans	superfamily_Prenyl_trans,HMMPfam_PPTA,superfamily_RabGG_trans_A,HMMPfam_RabGGT_insert,superfamily_SSF52058,HMMPfam_LRR_1	-	no_errors	
RFC1	5981	genome.wustl.edu	37	4	39304714	39304714	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	39304714	39304714	C	A	SNP	RFC1	NM_002913	human	genbank	57_37b	-1	reviewed	missense	c.2168	p.G723V	1.000	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA	superfamily_BRCT,HMMPfam_BRCT,HMMSmart_BRCT,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA,superfamily_Pol_clamp_load_C,HMMPfam_RFC1	-	no_errors	
RGPD1	0	genome.wustl.edu	37	2	87211939	87211939	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	87211939	87211939	C	G	SNP	RGPD1	NM_001024457	human	genbank	57_37b	+1	validated	missense	c.2644	p.L882V	1.000	NULL	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_PH domain-like,HMMSmart_SM00160,HMMPfam_Ran_BP1,HMMPfam_GRIP,HMMSmart_SM00755	-	no_errors	
RGPD2	729857	genome.wustl.edu	37	2	88084626	88084626	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	88084626	88084626	G	C	SNP	RGPD2	NM_001078170	human	genbank	57_37b	-1	validated	missense	c.415	p.L139V	1.000	NULL	HMMPfam_Ran_BP1,HMMSmart_RanBD,HMMPfam_GRIP,HMMSmart_Grip,superfamily_SSF50729	-	no_errors	
SEL1L3	23231	genome.wustl.edu	37	4	25769216	25769216	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	25769216	25769216	A	G	SNP	SEL1L3	NM_015187	human	genbank	57_37b	-1	validated	missense	c.2776	p.Y926H	0.990	superfamily_HCP-like	superfamily_HCP-like,HMMSmart_SM00671,HMMPfam_Sel1	-	no_errors	
SLC22A6	9356	genome.wustl.edu	37	11	62747289	62747289	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62747289	62747289	T	A	SNP	SLC22A6	NM_004790	human	genbank	57_37b	-1	reviewed	missense	c.1169	p.N390I	0.992	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors	
SLC9A3R1	9368	genome.wustl.edu	37	17	72764835	72764835	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72764835	72764835	G	-	DEL	SLC9A3R1	ENST00000413388	human	ensembl	57_37b	+1	known	frame_shift_del	c.779	p.S260fs	0.000	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	(deletion:cds_exon[72764607,72764878])	no_errors	
SNORD3A	0	genome.wustl.edu	37	17	19091517	19091517	+	RNA	SNP	T	T	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	19091517	19091517	T	G	SNP	SNORD3A	NR_006880	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.003	-	-	-	no_errors	
SOX10	6663	genome.wustl.edu	37	22	38369664	38369664	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	38369664	38369664	G	A	SNP	SOX10	NM_006941	human	genbank	57_37b	-1	reviewed	silent	c.1239	p.G413	1.000	NULL	superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors	
SP1	6667	genome.wustl.edu	37	12	53776045	53776045	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53776045	53776045	A	G	SNP	SP1	NM_138473	human	genbank	57_37b	+1	validated	missense	c.314	p.N105S	1.000	NULL	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors	
SSTR3	6753	genome.wustl.edu	37	22	37603630	37603630	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	37603630	37603630	C	A	SNP	SSTR3	NM_001051	human	genbank	57_37b	-1	reviewed	silent	c.213	p.R71	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
STXBP5	134957	genome.wustl.edu	37	6	147655358	147655358	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	147655358	147655358	G	C	SNP	STXBP5	NM_001127715	human	genbank	57_37b	+1	reviewed	missense	c.2146	p.G716R	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,PatternScan_WD_REPEATS_1,HMMPfam_WD40,HMMPfam_LLGL	-	no_errors	
TAF3	83860	genome.wustl.edu	37	10	8055756	8055756	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8055756	8055756	G	A	SNP	TAF3	NM_031923	human	genbank	57_37b	+1	provisional	silent	c.2631	p.G877	0.244	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1	HMMPfam_Bromo_TP,HMMSmart_BTP,superfamily_Histone-fold,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors	
TET3	200424	genome.wustl.edu	37	2	74275189	74275189	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	74275189	74275189	G	C	SNP	TET3	NM_144993	human	genbank	57_37b	+1	provisional	missense	c.1740	p.E580D	1.000	NULL	NULL	-	no_errors	
TLN1	7094	genome.wustl.edu	37	9	35698399	35698399	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35698399	35698399	A	-	DEL	TLN1	NM_006289	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.7292	p.V2431fs	1.000	superfamily_SSF109885,HMMSmart_ILWEQ,HMMPfam_I_LWEQ	HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,superfamily_Talin_cent,HMMPfam_Talin_middle,superfamily_SSF109885,HMMPfam_VBS,HMMSmart_ILWEQ,HMMPfam_I_LWEQ	(deletion:cds_exon[35698320,35698502])	no_errors	
TMEM132B	114795	genome.wustl.edu	37	12	125834179	125834179	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	125834179	125834179	C	G	SNP	TMEM132B	NM_052907	human	genbank	57_37b	+1	provisional	silent	c.234	p.A78	0.996	NULL	NULL	-	no_errors	
TNFRSF19	55504	genome.wustl.edu	37	13	24243187	24243187	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	24243187	24243187	A	T	SNP	TNFRSF19	NM_018647	human	genbank	57_37b	+1	reviewed	missense	c.1196	p.D399V	0.000	NULL	superfamily_TNF receptor-like,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,HMMPfam_TNFR_c6	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578416	7578419	+	Frame_Shift_Del	DEL	CCTC	CCTC	-	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	CCTC	CCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578416	7578419	CCTC	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.514_511	p.E171fs	1.000:1.000:1.000:1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7578371,7578554])	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578417	7578417	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578417	7578417	C	G	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.513	p.E171D	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
TRERF1	55809	genome.wustl.edu	37	6	42231282	42231282	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42231282	42231282	G	T	SNP	TRERF1	NM_033502	human	genbank	57_37b	-1	reviewed	missense	c.1660	p.P554T	0.998	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ELM2,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	-	no_errors	
TRHDE	29953	genome.wustl.edu	37	12	73014965	73014965	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	73014965	73014965	T	C	SNP	TRHDE	NM_013381	human	genbank	57_37b	+1	reviewed	silent	c.2412	p.V804	1.000	NULL	superfamily_SSF63737,HMMPfam_Peptidase_M1,superfamily_SSF55486,PatternScan_ZINC_PROTEASE	-	no_errors	
TRIM23	373	genome.wustl.edu	37	5	64913932	64913932	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	64913932	64913932	C	G	SNP	TRIM23	NM_001656	human	genbank	57_37b	-1	reviewed	missense	c.232	p.V78L	1.000	superfamily_RING/U-box	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00502,HMMSmart_SM00177,HMMSmart_SM00178,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,PatternScan_ARF	-	no_errors	
TRIM60	166655	genome.wustl.edu	37	4	165961479	165961479	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	165961479	165961479	G	A	SNP	TRIM60	NM_152620	human	genbank	57_37b	+1	reviewed	silent	c.255	p.R85	0.833	superfamily_SSF57850	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_PRY,HMMPfam_SPRY	-	no_errors	
TROAP	10024	genome.wustl.edu	37	12	49717740	49717740	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	49717740	49717740	G	T	SNP	TROAP	NM_005480	human	genbank	57_37b	+1	validated	missense	c.257	p.S86I	0.015	NULL	NULL	-	no_errors	
TRUB1	142940	genome.wustl.edu	37	10	116710862	116710862	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	116710862	116710862	T	A	SNP	TRUB1	NM_139169	human	genbank	57_37b	+1	validated	missense	c.395	p.I132N	1.000	superfamily_PsdUridine_synth_cat_dom,HMMPfam_TruB_N	superfamily_PsdUridine_synth_cat_dom,HMMPfam_TruB_N	-	no_errors	
TSHZ2	128553	genome.wustl.edu	37	20	51872574	51872574	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	51872574	51872574	G	T	SNP	TSHZ2	NM_173485	human	genbank	57_37b	+1	validated	missense	c.2577	p.Q859H	1.000	HMMSmart_HOX,HMMPfam_Homeobox	PatternScan_HOMEOBOX_1,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_HOX,HMMPfam_Homeobox,HMMPfam_zf-C2H2	-	no_errors	
TXN2	25828	genome.wustl.edu	37	22	36872855	36872855	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	36872855	36872855	C	G	SNP	TXN2	NM_012473	human	genbank	57_37b	-1	reviewed	silent	c.312	p.V104	1.000	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1	-	no_errors	
UBE2J1	51465	genome.wustl.edu	37	6	90045151	90045151	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	90045151	90045151	C	G	SNP	UBE2J1	NM_016021	human	genbank	57_37b	-1	reviewed	splice_site	c.429-1	e6-1	1.000	-	-	-	no_errors	
UNC5D	137970	genome.wustl.edu	37	8	35608123	35608123	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	35608123	35608123	A	T	SNP	UNC5D	NM_080872	human	genbank	57_37b	+1	validated	missense	c.1959	p.E653D	1.000	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,PatternScan_SERPIN,HMMPfam_ZU5,HMMSmart_SM00218,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death	-	no_errors	
USP36	57602	genome.wustl.edu	37	17	76795831	76795831	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	76795831	76795831	A	T	SNP	USP36	NM_025090	human	genbank	57_37b	-1	validated	silent	c.3042	p.P1014	0.000	NULL	superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,PatternScan_IG_MHC	-	no_errors	
VCPIP1	80124	genome.wustl.edu	37	8	67547576	67547576	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	67547576	67547576	T	C	SNP	VCPIP1	NM_025054	human	genbank	57_37b	-1	validated	silent	c.2829	p.P943	1.000	NULL	HMMPfam_OTU	-	no_errors	
WBSCR17	64409	genome.wustl.edu	37	7	71175821	71175821	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	71175821	71175821	T	G	SNP	WBSCR17	NM_022479	human	genbank	57_37b	+1	reviewed	missense	c.1576	p.C526G	1.000	superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458	-	no_errors	
XIRP1	165904	genome.wustl.edu	37	3	39228482	39228482	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	39228482	39228482	T	G	SNP	XIRP1	NM_194293	human	genbank	57_37b	-1	provisional	missense	c.2455	p.K819Q	0.997	NULL	HMMPfam_Xin	-	no_errors	
ZCCHC6	79670	genome.wustl.edu	37	9	88932177	88932177	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	88932177	88932177	G	C	SNP	ZCCHC6	NM_024617	human	genbank	57_37b	-1	validated	silent	c.3231	p.V1077	0.966	superfamily_Nucleotidyltransferase,HMMPfam_NTP_transf_2	HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain,HMMPfam_PAP_assoc,HMMPfam_zf-CCHC,HMMSmart_SM00343,HMMPfam_NTP_transf_2,superfamily_Retrovirus zinc finger-like domains	-	no_errors	
ZNF189	7743	genome.wustl.edu	37	9	104171093	104171103	+	Frame_Shift_Del	DEL	AGTGTGGAAAA	AGTGTGGAAAA	-	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	AGTGTGGAAAA	AGTGTGGAAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	104171093	104171103	AGTGTGGAAAA	-	DEL	ZNF189	NM_003452	human	genbank	57_37b	+1	validated	frame_shift_del	c.1043_1053	p.C349fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:0.998	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[104170211,104171931])	no_errors	
ZNF487	642819	genome.wustl.edu	37	10	43977890	43977890	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	43977890	43977890	G	A	SNP	ZNF487	ENST00000431662	human	ensembl	57_37b	+1	known	missense	c.805	p.D269N	0.001	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF716	441234	genome.wustl.edu	37	7	57529139	57529139	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0AR-01A-11W-A019-09	TCGA-AN-A0AR-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	57529139	57529139	C	A	SNP	ZNF716	ENST00000420713	human	ensembl	57_37b	+1	known	nonsense	c.972	p.Y324*	0.036	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
