Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AARS2	57505	genome.wustl.edu	37	6	44278884	44278884	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	44278884	44278884	C	T	SNP	AARS2	NM_020745	human	genbank	57_37b	-1	validated	missense	c.596	p.R199H	0.908	superfamily_SSF55681,HMMPfam_tRNA-synt_2c	superfamily_SSF55681,HMMPfam_tRNA-synt_2c,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,HMMPfam_tRNA_SAD	-	no_errors	
ABCA4	24	genome.wustl.edu	37	1	94466444	94466444	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	94466444	94466444	T	A	SNP	ABCA4	NM_000350	human	genbank	57_37b	-1	reviewed	missense	c.6427	p.M2143L	1.000	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ACVR1B	91	genome.wustl.edu	37	12	52379131	52379131	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52379131	52379131	C	T	SNP	ACVR1B	NM_004302	human	genbank	57_37b	+1	reviewed	nonsense	c.1135	p.R379*	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	superfamily_Snake toxin-like,HMMPfam_Activin_recp,HMMPfam_TGF_beta_GS,HMMSmart_SM00467,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
AFF2	2334	genome.wustl.edu	37	X	148037946	148037946	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	148037946	148037946	C	G	SNP	AFF2	NM_002025	human	genbank	57_37b	+1	reviewed	missense	c.2371	p.P791A	1.000	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors	
ALG10B	144245	genome.wustl.edu	37	12	38714401	38714401	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	38714401	38714401	G	A	SNP	ALG10B	NM_001013620	human	genbank	57_37b	+1	validated	missense	c.808	p.V270I	0.010	HMMPfam_DIE2_ALG10	HMMPfam_DIE2_ALG10	-	no_errors	
AOAH	313	genome.wustl.edu	37	7	36698846	36698846	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	36698846	36698846	A	G	SNP	AOAH	NM_001637	human	genbank	57_37b	-1	reviewed	silent	c.315	p.D105	1.000	superfamily_Saposin_like,HMMSmart_SapB,HMMPfam_SapB_2	PatternScan_LIPASE_GDSL_SER,superfamily_Saposin_like,HMMSmart_SapB,HMMPfam_SapB_2,superfamily_Esterase_SGNH_hydro-type,HMMPfam_Lipase_GDSL	-	no_errors	
C14orf37	145407	genome.wustl.edu	37	14	58598350	58598350	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	58598350	58598350	G	A	SNP	C14orf37	NM_001001872	human	genbank	57_37b	-1	predicted	missense	c.1711	p.P571S	0.000	NULL	NULL	-	no_errors	
C9orf125	84302	genome.wustl.edu	37	9	104238341	104238341	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	104238341	104238341	C	T	SNP	C9orf125	NM_032342	human	genbank	57_37b	-1	provisional	missense	c.1034	p.R345H	1.000	NULL	NULL	-	no_errors	
CAMK2D	817	genome.wustl.edu	37	4	114434519	114434519	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	114434519	114434519	A	G	SNP	CAMK2D	NM_001221	human	genbank	57_37b	-1	reviewed	missense	c.911	p.I304T	1.000	superfamily_Protein kinase-like (PK-like)	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMPfam_CaMKII_AD	-	no_errors	
COL14A1	7373	genome.wustl.edu	37	8	121222032	121222032	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	121222032	121222032	C	T	SNP	COL14A1	NM_021110	human	genbank	57_37b	+1	validated	silent	c.1359	p.D453	0.956	HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen	-	no_errors	
D2HGDH	728294	genome.wustl.edu	37	2	242695381	242695381	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	242695381	242695381	G	A	SNP	D2HGDH	NM_152783	human	genbank	57_37b	+1	reviewed	missense	c.1258	p.A420T	0.000	superfamily_FAD-linked oxidases C-terminal domain,HMMPfam_FAD-oxidase_C	superfamily_FAD-binding domain,HMMPfam_FAD_binding_4,superfamily_FAD-linked oxidases C-terminal domain,HMMPfam_FAD-oxidase_C	-	no_errors	
DNHD1	144132	genome.wustl.edu	37	11	6579764	6579764	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6579764	6579764	G	A	SNP	DNHD1	NM_144666	human	genbank	57_37b	+1	provisional	missense	c.9052	p.D3018N	0.697	NULL	HMMPfam_DHC_N2,superfamily_Ferritin-like,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynein_heavy	-	no_errors	
ENSG00000245609	0	genome.wustl.edu	37	16	21831680	21831680	+	RNA	DEL	A	A	-	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	21831680	21831680	A	-	DEL	ENSG00000245609	ENST00000501898	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.645	-	-	(deletion:rna[21830650,21831775])	no_errors	
ENSG00000247791	0	genome.wustl.edu	37	21	40555160	40555160	+	RNA	SNP	C	C	G	rs34294410	byCluster;byFrequency;by1000genomes	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	40555160	40555160	C	G	SNP	ENSG00000247791	ENST00000501058	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
FAM157C	0	genome.wustl.edu	37	16	90167886	90167886	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	90167886	90167886	G	C	SNP	FAM157C	XM_001714162	human	genbank	57_37b	+1	model	missense	c.89	p.R30P	0.029	NULL	NULL	-	no_errors	
FAM59B	150946	genome.wustl.edu	37	2	26405961	26405961	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	26405961	26405961	G	A	SNP	FAM59B	ENST00000380681	human	ensembl	57_37b	+1	known	missense	c.718	p.V240I	1.000	NULL	superfamily_SAM/Pointed domain,HMMPfam_SAM_1	-	no_errors	
FGF23	8074	genome.wustl.edu	37	12	4479739	4479739	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	4479739	4479739	G	T	SNP	FGF23	NM_020638	human	genbank	57_37b	-1	reviewed	silent	c.526	p.R176	0.901	NULL	PatternScan_HBGF_FGF,superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF	-	no_errors	
GPR39	2863	genome.wustl.edu	37	2	133175158	133175158	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	133175158	133175158	G	T	SNP	GPR39	NM_001508	human	genbank	57_37b	+1	validated	silent	c.543	p.V181	0.184	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
GRM3	2913	genome.wustl.edu	37	7	86415634	86415634	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	86415634	86415634	G	A	SNP	GRM3	NM_000840	human	genbank	57_37b	+1	reviewed	missense	c.526	p.A176T	1.000	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors	
LAMA2	3908	genome.wustl.edu	37	6	129785500	129785500	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	129785500	129785500	G	A	SNP	LAMA2	NM_000426	human	genbank	57_37b	+1	reviewed	missense	c.7058	p.R2353H	1.000	superfamily_ConA_like_lec_gl	HMMSmart_LamNT,HMMPfam_Laminin_N,superfamily_Gal_bind_like,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_LAM_1,superfamily_SSF57196,PatternScan_EGF_2,HMMSmart_LamB,HMMPfam_Laminin_B,HMMPfam_Laminin_I,superfamily_SSF56399,HMMPfam_Laminin_II,HMMSmart_LamG,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2	-	no_errors	
LOC100131539	0	genome.wustl.edu	37	11	71527792	71527792	+	Silent	SNP	T	T	C	rs79877728	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	71527792	71527792	T	C	SNP	LOC100131539	XM_001723234	human	genbank	57_37b	-1	model	silent	c.669	p.T223	0.761	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-		
LOC100132858	0	genome.wustl.edu	37	7	36290	36290	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	36290	36290	C	G	SNP	LOC100132858	XM_001715131	human	genbank	57_37b	-1	model	missense	c.89	p.R30P	0.007	NULL	NULL	-	no_errors	
LOC389369	389369	genome.wustl.edu	37	6	11811314	11811314	+	Silent	SNP	C	C	T	rs3950186	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	11811314	11811314	C	T	SNP	LOC389369	XM_374161	human	genbank	57_37b	+1	model	silent	c.327	p.F109	0.001	NULL	NULL	-		
LOC646090	646090	genome.wustl.edu	37	15	20482111	20482111	+	RNA	SNP	G	G	A	rs11629632	byCluster;byHapMap;by1000genomes	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	20482111	20482111	G	A	SNP	LOC646090	XR_017120	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.976	-	-	-		
LOC646096	646096	genome.wustl.edu	37	15	20496657	20496657	+	RNA	SNP	C	C	T	rs7180374	byCluster;byFrequency;by2Hit2Allele	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	20496657	20496657	C	T	SNP	LOC646096	XR_040858	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.921	-	-	-		
LOC648740	648740	genome.wustl.edu	37	1	104113158	104113158	+	RNA	SNP	C	C	T	rs12132911	byCluster;byFrequency;by1000genomes	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	104113158	104113158	C	T	SNP	LOC648740	NR_024438	human	genbank	57_37b	+1	validated	rna	NULL	NULL	1.000	-	-	-		
MCAM	4162	genome.wustl.edu	37	11	119181587	119181587	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	119181587	119181587	G	T	SNP	MCAM	NM_006500	human	genbank	57_37b	-1	validated	silent	c.1672	p.R558	0.785	NULL	HMMPfam_V-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig	-	no_errors	
MIAT	440823	genome.wustl.edu	37	22	27068052	27068052	+	RNA	SNP	A	T	T	rs5761670	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	27068052	27068052	A	T	SNP	MIAT	NR_003491	human	genbank	57_37b	+1	reviewed	rna	NULL	NULL	0.198	-	-	-		
NID1	4811	genome.wustl.edu	37	1	236205579	236205579	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	236205579	236205579	C	T	SNP	NID1	NM_002508	human	genbank	57_37b	-1	reviewed	missense	c.766	p.G256R	0.989	HMMSmart_SM00539,HMMPfam_NIDO	HMMSmart_SM00539,HMMPfam_NIDO,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMSmart_SM00682,HMMPfam_G2F,superfamily_GFP-like,PatternScan_EGF_CA,HMMPfam_EGF_CA,superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,PatternScan_EGF_1	-	no_errors	
NTSR2	23620	genome.wustl.edu	37	2	11802135	11802135	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	11802135	11802135	C	T	SNP	NTSR2	NM_012344	human	genbank	57_37b	-1	reviewed	missense	c.856	p.V286M	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
NUP153	9972	genome.wustl.edu	37	6	17629273	17629273	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	17629273	17629273	T	A	SNP	NUP153	NM_005124	human	genbank	57_37b	-1	reviewed	missense	c.3157	p.I1053L	0.000	NULL	HMMPfam_Nup153,HMMPfam_zf-RanBP,HMMSmart_ZnF_RBZ,PatternScan_ZF_RANBP2_1,HMMPfam_Nup_retrotrp_bd	-	no_errors	
OTOF	9381	genome.wustl.edu	37	2	26712561	26712561	+	Silent	SNP	C	C	T	rs41288779	byCluster;byFrequency;by1000genomes	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	26712561	26712561	C	T	SNP	OTOF	NM_194248	human	genbank	57_37b	-1	reviewed	silent	c.945	p.K315	1.000	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerB	-		
PGD	5226	genome.wustl.edu	37	1	10477067	10477067	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	10477067	10477067	T	G	SNP	PGD	NM_002631	human	genbank	57_37b	+1	reviewed	missense	c.868	p.L290V	1.000	superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like,HMMPfam_6PGD	HMMPfam_NAD_binding_2,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like,HMMPfam_6PGD,PatternScan_6PGD	-	no_errors	
PHACTR1	221692	genome.wustl.edu	37	6	13287303	13287303	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	13287303	13287303	G	T	SNP	PHACTR1	NM_030948	human	genbank	57_37b	+1	validated	missense	c.1736	p.R579L	1.000	NULL	HMMPfam_RPEL,HMMSmart_SM00707	-	no_errors	
PHLDA1	22822	genome.wustl.edu	37	12	76424820	76424820	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	76424820	76424820	G	T	SNP	PHLDA1	NM_007350	human	genbank	57_37b	-1	reviewed	missense	c.702	p.F234L	1.000	superfamily_SSF50729,HMMSmart_PH	superfamily_SSF50729,HMMSmart_PH	-	no_errors	
PKD1L2	114780	genome.wustl.edu	37	16	81242149	81242150	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	81242149	81242150	TT	-	DEL	PKD1L2	NM_001076780	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.707_706	p.N236fs	0.998:0.999	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	(deletion:cds_exon[81242096,81242206])	no_errors	
PKD1L2	114780	genome.wustl.edu	37	16	81242151	81242151	+	Silent	SNP	T	T	C	rs74840013	by1000genomes	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	81242151	81242151	T	C	SNP	PKD1L2	NM_001076780	human	genbank	57_37b	-1	reviewed	silent	c.705	p.G235	1.000	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	-		
PLEC	0	genome.wustl.edu	37	8	144995939	144995939	+	Missense_Mutation	SNP	G	G	A	rs35723243	byCluster;byFrequency;by1000genomes	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144995939	144995939	G	A	SNP	PLEC	NM_201380	human	genbank	57_37b	-1	reviewed	missense	c.8461	p.R2821W	0.013	superfamily_Plakin repeat	HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	-		
RFPL1S	10740	genome.wustl.edu	37	22	29835418	29835418	+	RNA	SNP	C	A	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	29835418	29835418	C	A	SNP	RFPL1S	NR_002727	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors	
RPLP0P2	113157	genome.wustl.edu	37	11	61404336	61404336	+	RNA	SNP	G	G	A	rs17626916	byCluster;byFrequency;by1000genomes	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	61404336	61404336	G	A	SNP	RPLP0P2	NR_002775	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	1.000	-	-	-		
SLC4A2	6522	genome.wustl.edu	37	7	150761314	150761314	+	Missense_Mutation	SNP	G	G	A	rs2303929	byCluster;byFrequency;by1000genomes	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150761314	150761314	G	A	SNP	SLC4A2	NM_003040	human	genbank	57_37b	+1	validated	missense	c.77	p.G26E	0.000	NULL	superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp,PatternScan_ANION_EXCHANGER_1,PatternScan_ANION_EXCHANGER_2	-		
SNRPN	6638	genome.wustl.edu	37	15	25222051	25222051	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	25222051	25222051	G	T	SNP	SNRPN	NM_003097	human	genbank	57_37b	+1	reviewed	nonsense	c.295	p.G99*	1.000	NULL	superfamily_Sm-like ribonucleoproteins,HMMPfam_LSM,HMMSmart_SM00651	-	no_errors	
SUPT5H	6829	genome.wustl.edu	37	19	39955678	39955678	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	39955678	39955678	G	A	SNP	SUPT5H	NM_001111020	human	genbank	57_37b	+1	validated	missense	c.865	p.D289N	1.000	HMMSmart_SM00739	HMMPfam_Supt5,HMMSmart_SM00738,HMMSmart_SM00739,superfamily_Translation proteins SH3-like domain,HMMPfam_KOW	-	no_errors	
TGFBR2	7048	genome.wustl.edu	37	3	30732950	30732950	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	30732950	30732950	G	A	SNP	TGFBR2	NM_001024847	human	genbank	57_37b	+1	reviewed	nonsense	c.1638	p.W546*	1.000	HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_ecTbetaR2,superfamily_Snake toxin-like,HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
TOR1AIP1	26092	genome.wustl.edu	37	1	179870511	179870511	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	179870511	179870511	G	T	SNP	TOR1AIP1	NM_015602	human	genbank	57_37b	+1	validated	missense	c.727	p.D243Y	0.068	HMMPfam_LAP1C	HMMPfam_LAP1C	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7574003	7574003	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7574003	7574003	G	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	nonsense	c.1024	p.R342*	0.307	HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
TPSAB1	7177	genome.wustl.edu	37	16	1292350	1292350	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1292350	1292350	G	A	SNP	TPSAB1	ENST00000423126	human	ensembl	57_37b	+1	known	silent	c.696	p.P232	0.010	HMMSmart_SM00020	HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS	-	no_errors	
USP2	9099	genome.wustl.edu	37	11	119229504	119229504	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	119229504	119229504	G	A	SNP	USP2	NM_004205	human	genbank	57_37b	-1	validated	missense	c.1216	p.R406W	1.000	superfamily_Cysteine proteinases,HMMPfam_UCH	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors	
USP5	8078	genome.wustl.edu	37	12	6964674	6964674	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6964674	6964674	G	A	SNP	USP5	NM_001098536	human	genbank	57_37b	+1	validated	missense	c.221	p.R74Q	0.995	NULL	HMMSmart_SM00290,HMMPfam_zf-UBP,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,HMMPfam_UBA,HMMSmart_SM00165,superfamily_UBA-like,PatternScan_UCH_2_2	-	no_errors	
USP9X	8239	genome.wustl.edu	37	X	41076559	41076559	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	41076559	41076559	C	G	SNP	USP9X	NM_001039590	human	genbank	57_37b	+1	reviewed	missense	c.6172	p.H2058D	1.000	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors	
