Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADH1B	125	genome.wustl.edu	37	4	100232778	100232778	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	100232778	100232778	G	T	SNP	ADH1B	NM_000668	human	genbank	57_37b	-1	reviewed	silent	c.864	p.G288	0.000	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N	superfamily_GroES-like,HMMPfam_ADH_N,PatternScan_ADH_ZINC,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N	-	no_errors	
AKAP13	11214	genome.wustl.edu	37	15	86124520	86124520	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	86124520	86124520	C	T	SNP	AKAP13	NM_006738	human	genbank	57_37b	+1	reviewed	missense	c.3221	p.S1074F	0.000	NULL	superfamily_ANK,HMMPfam_RII_binding_1,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,PatternScan_EF_HAND_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,HMMPfam_PH,superfamily_SSF50729,HMMSmart_PH	-	no_errors	
ANPEP	290	genome.wustl.edu	37	15	90347735	90347736	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	90347735	90347736	-	G	INS	ANPEP	NM_001150	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.1011_1010	p.L338fs	0.115:1.000	HMMPfam_Peptidase_M1,superfamily_SSF55486	superfamily_SSF63737,HMMPfam_Peptidase_M1,superfamily_SSF55486,PatternScan_ZINC_PROTEASE	-	no_errors	
AQP7P2	389756	genome.wustl.edu	37	9	69634664	69634664	+	RNA	SNP	G	G	C	rs114894776	by1000genomes	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	69634664	69634664	G	C	SNP	AQP7P2	NR_002823	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.969	-	-	-		
ARHGEF17	9828	genome.wustl.edu	37	11	73076908	73076908	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	73076908	73076908	G	A	SNP	ARHGEF17	NM_014786	human	genbank	57_37b	+1	validated	missense	c.5911	p.G1971S	1.000	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	-	no_errors	
ATAD3B	83858	genome.wustl.edu	37	1	1431165	1431165	+	Missense_Mutation	SNP	C	C	T	rs9792879	byCluster	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1431165	1431165	C	T	SNP	ATAD3B	NM_031921	human	genbank	57_37b	+1	provisional	missense	c.1915	p.P639S	0.003	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA	-		
ATP2B2	491	genome.wustl.edu	37	3	10370621	10370621	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	10370621	10370621	C	T	SNP	ATP2B2	NM_001001331	human	genbank	57_37b	-1	reviewed	silent	c.3609	p.P1203	0.788	NULL	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,HMMPfam_Hydrolase,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors	
BBOX1	8424	genome.wustl.edu	37	11	27148982	27148982	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	27148982	27148982	G	A	SNP	BBOX1	NM_003986	human	genbank	57_37b	+1	reviewed	silent	c.1146	p.R382	0.000	superfamily_Clavaminate synthase-like	superfamily_Clavaminate synthase-like,HMMPfam_TauD	-	no_errors	
CCNL1	57018	genome.wustl.edu	37	3	156877707	156877707	+	Silent	SNP	A	A	T	rs9814142	byCluster;by1000genomes	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	156877707	156877707	A	T	SNP	CCNL1	NM_020307	human	genbank	57_37b	-1	validated	silent	c.177	p.I59	0.459	HMMPfam_Cyclin_N	HMMPfam_Cyclin_N,superfamily_Cyclin-like,HMMSmart_SM00385	-		
CD1C	911	genome.wustl.edu	37	1	158261934	158261934	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158261934	158261934	G	A	SNP	CD1C	NM_001765	human	genbank	57_37b	+1	reviewed	missense	c.389	p.G130D	0.001	superfamily_MHC_I/II-like_Ag-recog,HMMPfam_MHC_I	superfamily_MHC_I/II-like_Ag-recog,HMMPfam_MHC_I,superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1	-	no_errors	
CHL1	10752	genome.wustl.edu	37	3	436516	436516	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	436516	436516	A	T	SNP	CHL1	NM_006614	human	genbank	57_37b	+1	reviewed	nonsense	c.3055	p.K1019*	0.053	superfamily_Fibronectin type III	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060	-	no_errors	
CHM	1121	genome.wustl.edu	37	X	85282501	85282501	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	85282501	85282501	A	G	SNP	CHM	NM_000390	human	genbank	57_37b	-1	reviewed	missense	c.110	p.V37A	1.000	superfamily_SSF51905,HMMPfam_GDI	superfamily_SSF51905,HMMPfam_GDI,superfamily_SSF54373	-	no_errors	
CLEC17A	388512	genome.wustl.edu	37	19	14710534	14710534	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	14710534	14710534	G	A	SNP	CLEC17A	NM_207390	human	genbank	57_37b	+1	validated	missense	c.601	p.G201S	0.885	NULL	superfamily_C-type lectin-like,HMMPfam_Lectin_C	-	no_errors	
COMP	1311	genome.wustl.edu	37	19	18895094	18895094	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	18895094	18895094	C	T	SNP	COMP	NM_000095	human	genbank	57_37b	-1	reviewed	missense	c.1994	p.R665Q	1.000	superfamily_ConA_like_lec_gl,HMMPfam_TSP_C	PatternScan_EGF_1,superfamily_SSF57196,HMMSmart_EGF,PatternScan_EGF_CA,HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_2,superfamily_SSF103647,HMMPfam_TSP_3,superfamily_ConA_like_lec_gl,HMMPfam_TSP_C	-	no_errors	
CROCCL1	84809	genome.wustl.edu	37	1	16944809	16944809	+	RNA	SNP	G	G	C	rs3093	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16944809	16944809	G	C	SNP	CROCCL1	NR_026752	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-		
CROT	54677	genome.wustl.edu	37	7	87005203	87005203	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	87005203	87005203	G	A	SNP	CROT	NM_001143935	human	genbank	57_37b	+1	reviewed	silent	c.894	p.Q298	1.000	superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf	superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2	-	no_errors	
CSTF2	1478	genome.wustl.edu	37	X	100083082	100083082	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	100083082	100083082	C	T	SNP	CSTF2	NM_001325	human	genbank	57_37b	+1	reviewed	missense	c.880	p.R294W	0.762	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors	
DBH	1621	genome.wustl.edu	37	9	136516770	136516770	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	136516770	136516770	C	T	SNP	DBH	NM_000787	human	genbank	57_37b	+1	reviewed	silent	c.1206	p.S402	0.001	HMMPfam_Cu2_monoox_C,superfamily_PHM_PNGase_F	HMMSmart_DoH,HMMPfam_DOMON,superfamily_PHM_PNGase_F,HMMPfam_Cu2_monooxygen,PatternScan_CU2_MONOOXYGENASE_1,HMMPfam_Cu2_monoox_C,PatternScan_CU2_MONOOXYGENASE_2	-	no_errors	
DNAJB8	165721	genome.wustl.edu	37	3	128181429	128181429	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	128181429	128181429	C	T	SNP	DNAJB8	NM_153330	human	genbank	57_37b	-1	validated	silent	c.660	p.V220	0.724	NULL	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,PatternScan_DNAJ_1	-	no_errors	
ENSG00000214627	0	genome.wustl.edu	37	16	31987200	31987200	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	31987200	31987200	G	T	SNP	ENSG00000214627	ENST00000398685	human	ensembl	57_37b	+1	known	missense	c.3	p.M1I	1.000	NULL	HMMSmart_PH,superfamily_SSF50729,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	no_errors	
ENSG00000222037	0	genome.wustl.edu	37	22	23055588	23055588	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	23055588	23055588	A	G	SNP	ENSG00000222037	ENST00000454507	human	ensembl	57_37b	+1	known	missense	c.251	p.N84S	0.815	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC	-	no_errors	
ENSG00000226943	0	genome.wustl.edu	37	7	6964368	6964368	+	Missense_Mutation	SNP	T	T	C	rs57915319	byCluster;by1000genomes	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	6964368	6964368	T	C	SNP	ENSG00000226943	ENST00000444054	human	ensembl	57_37b	+1	known	missense	c.184	p.C62R	0.003	NULL	NULL	-		
ENSG00000233556	0	genome.wustl.edu	37	15	35385293	35385293	+	Silent	SNP	T	T	C	rs80060588	byCluster;by1000genomes	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	35385293	35385293	T	C	SNP	ENSG00000233556	ENST00000454093	human	ensembl	57_37b	+1	known	silent	c.612	p.S204	0.908	NULL	superfamily_CCCH zinc finger,HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_RNA-binding domain RBD,HMMSmart_SM00361	-		
EXD3	54932	genome.wustl.edu	37	9	140247143	140247143	+	Missense_Mutation	SNP	T	T	G	rs7020732	byCluster;by1000genomes	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140247143	140247143	T	G	SNP	EXD3	NM_017820	human	genbank	57_37b	-1	validated	missense	c.966	p.E322D	0.014	NULL	HMMSmart_35EXOc,superfamily_RNaseH_fold,HMMPfam_3_5_exonuc,HMMPfam_DUF82	-		
FLJ14186	401149	genome.wustl.edu	37	4	120330643	120330643	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	120330643	120330643	G	A	SNP	FLJ14186	XR_078311	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.709	-	-	-	no_errors	
GABPA	2551	genome.wustl.edu	37	21	27141488	27141488	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	27141488	27141488	C	G	SNP	GABPA	NM_002040	human	genbank	57_37b	+1	validated	missense	c.1310	p.P437R	1.000	NULL	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors	
GCAT	23464	genome.wustl.edu	37	22	38204089	38204089	+	Missense_Mutation	SNP	C	C	T	rs79849571	byCluster;by1000genomes	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	38204089	38204089	C	T	SNP	GCAT	NM_014291	human	genbank	57_37b	+1	reviewed	missense	c.115	p.R39C	1.000	superfamily_PyrdxlP-dep_Trfase_major	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Aminotran_1_2,PatternScan_AA_TRANSFER_CLASS_2	-		
GPATCH2	55105	genome.wustl.edu	37	1	217688214	217688214	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	217688214	217688214	T	G	SNP	GPATCH2	NM_018040	human	genbank	57_37b	-1	provisional	silent	c.1116	p.P372	0.191	NULL	HMMSmart_SM00443,HMMPfam_G-patch	-	no_errors	
HIST2H2BF	440689	genome.wustl.edu	37	1	149783828	149783828	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	149783828	149783828	C	A	SNP	HIST2H2BF	ENST00000427880	human	ensembl	57_37b	-1	known	missense	c.51	p.K17N	0.854	superfamily_Histone-fold	superfamily_Histone-fold,HMMSmart_H2B,HMMPfam_Histone,PatternScan_HISTONE_H2B	-	no_errors	
HMHA1	23526	genome.wustl.edu	37	19	1079959	1079959	+	Missense_Mutation	SNP	G	G	A	rs36084354	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1079959	1079959	G	A	SNP	HMHA1	NM_012292	human	genbank	57_37b	+1	validated	missense	c.1545	p.M515I	1.000	NULL	HMMSmart_FCH,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-		
HPS4	89781	genome.wustl.edu	37	22	26859942	26859942	+	Missense_Mutation	SNP	C	C	T	rs5752330	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	26859942	26859942	C	T	SNP	HPS4	NM_022081	human	genbank	57_37b	-1	reviewed	missense	c.1654	p.V552M	0.901	NULL	NULL	-		
IFNE	338376	genome.wustl.edu	37	9	21481249	21481249	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	21481249	21481249	G	A	SNP	IFNE	NM_176891	human	genbank	57_37b	-1	validated	nonsense	c.445	p.R149*	0.142	HMMPfam_Interferon,superfamily_4_helix_cytokine,HMMSmart_IFabd,PatternScan_INTERFERON_A_B_D	HMMPfam_Interferon,superfamily_4_helix_cytokine,HMMSmart_IFabd,PatternScan_INTERFERON_A_B_D	-	no_errors	
INHBA	3624	genome.wustl.edu	37	7	41729515	41729515	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	41729515	41729515	C	T	SNP	INHBA	NM_002192	human	genbank	57_37b	-1	reviewed	nonsense	c.1014	p.W338*	1.000	superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204	HMMPfam_TGFb_propeptide,superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1	-	no_errors	
KIAA1012	22878	genome.wustl.edu	37	18	29497565	29497565	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	29497565	29497565	C	A	SNP	KIAA1012	NM_014939	human	genbank	57_37b	-1	validated	nonsense	c.418	p.E140*	1.000	NULL	superfamily_TPR-like	-	no_errors	
KLHDC7A	127707	genome.wustl.edu	37	1	18807620	18807620	+	Missense_Mutation	SNP	G	G	C	rs34109355	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	18807620	18807620	G	C	SNP	KLHDC7A	NM_152375	human	genbank	57_37b	+1	validated	missense	c.145	p.G49R	0.108	NULL	superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch	-		
KLHL30	377007	genome.wustl.edu	37	2	239051550	239051550	+	Silent	SNP	T	T	C	rs935411	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	239051550	239051550	T	C	SNP	KLHL30	NM_198582	human	genbank	57_37b	+1	validated	silent	c.831	p.F277	0.673	superfamily_Galactose oxidase central domain	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-		
LASS4	79603	genome.wustl.edu	37	19	8326944	8326944	+	Missense_Mutation	SNP	G	G	A	rs17160349	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	8326944	8326944	G	A	SNP	LASS4	NM_024552	human	genbank	57_37b	+1	validated	missense	c.1136	p.R379Q	0.071	NULL	superfamily_Homeodomain-like,HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8	-		
LRIG1	26018	genome.wustl.edu	37	3	66433581	66433581	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	66433581	66433581	C	G	SNP	LRIG1	NM_015541	human	genbank	57_37b	-1	validated	missense	c.2316	p.E772D	1.000	HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRCT,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	-	no_errors	
LRP10	26020	genome.wustl.edu	37	14	23346279	23346279	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23346279	23346279	G	A	SNP	LRP10	NM_014045	human	genbank	57_37b	+1	validated	missense	c.1685	p.R562H	1.000	NULL	superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,HMMPfam_Ldl_recept_a,superfamily_LDL receptor-like module,HMMSmart_SM00192,HMMPfam_CUB,PatternScan_LDLRA_1	-	no_errors	
MFI2	4241	genome.wustl.edu	37	3	196736580	196736580	+	Silent	SNP	G	G	A	rs113102133	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	196736580	196736580	G	A	SNP	MFI2	NM_005929	human	genbank	57_37b	-1	reviewed	silent	c.1434	p.A478	0.000	superfamily_Periplasmic binding protein-like II,HMMPfam_Transferrin,HMMSmart_SM00094	superfamily_Periplasmic binding protein-like II,HMMPfam_Transferrin,HMMSmart_SM00094,PatternScan_TRANSFERRIN_1,PatternScan_TRANSFERRIN_2,PatternScan_TRANSFERRIN_3	-		
MIR648	0	genome.wustl.edu	37	22	18463645	18463645	+	RNA	SNP	C	C	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	18463645	18463645	C	A	SNP	MIR648	ENST00000385046	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	
MKI67	4288	genome.wustl.edu	37	10	129905447	129905447	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	129905447	129905447	C	A	SNP	MKI67	NM_002417	human	genbank	57_37b	-1	reviewed	missense	c.4657	p.A1553S	0.000	HMMPfam_K167R	superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,HMMPfam_K167R	-	no_errors	
MMP15	4324	genome.wustl.edu	37	16	58073845	58073845	+	Silent	SNP	C	C	T	rs2304489	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	58073845	58073845	C	T	SNP	MMP15	NM_002428	human	genbank	57_37b	+1	reviewed	silent	c.507	p.R169	0.009	HMMSmart_ZnMc,superfamily_SSF55486,HMMPfam_Peptidase_M10	HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_CYSTEINE_SWITCH,HMMSmart_ZnMc,superfamily_SSF55486,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX,PatternScan_HEMOPEXIN	-		
MTERFD1	51001	genome.wustl.edu	37	8	97263275	97263277	+	In_Frame_Del	DEL	AGG	AGG	-	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	97263275	97263277	AGG	-	DEL	MTERFD1	NM_015942	human	genbank	57_37b	-1	provisional	in_frame_del	c.536_534	p.L180in_frame_del	1.000:1.000:0.998	HMMPfam_mTERF,HMMSmart_SM00733	HMMPfam_mTERF,HMMSmart_SM00733	(deletion:cds_exon[97263134,97263323])	no_errors	
MUC5B	727897	genome.wustl.edu	37	11	1156646	1156646	+	Missense_Mutation	SNP	C	G	G	rs35783651	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1156646	1156646	C	G	SNP	MUC5B	ENST00000406844	human	ensembl	57_37b	+1	known	missense	c.663	p.S221R	0.072	HMMSmart_SM00216	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot	-		
NPHP4	261734	genome.wustl.edu	37	1	5937168	5937168	+	Silent	SNP	G	G	A	rs3747992	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	5937168	5937168	G	A	SNP	NPHP4	NM_015102	human	genbank	57_37b	-1	reviewed	silent	c.2802	p.R934	0.000	NULL	NULL	-		
NUP210	23225	genome.wustl.edu	37	3	13395579	13395579	+	Missense_Mutation	SNP	C	C	A	rs2280084	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	13395579	13395579	C	A	SNP	NUP210	NM_024923	human	genbank	57_37b	-1	reviewed	missense	c.2357	p.R786L	0.006	NULL	superfamily_Invasin/intimin cell-adhesion fragments,HMMPfam_Big_2,HMMSmart_SM00635	-		
PCDHA6	56142	genome.wustl.edu	37	5	140209782	140209782	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140209782	140209782	C	T	SNP	PCDHA6	NM_018909	human	genbank	57_37b	+1	reviewed	silent	c.2106	p.I702	0.016	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PCNXL2	80003	genome.wustl.edu	37	1	233121791	233121791	+	Missense_Mutation	SNP	G	G	A	rs12038915	byCluster;by1000genomes	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	233121791	233121791	G	A	SNP	PCNXL2	ENST00000344698	human	ensembl	57_37b	-1	known	missense	c.2243	p.T748M	0.000	NULL	HMMPfam_Pecanex_C	-		
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
RERE	473	genome.wustl.edu	37	1	8421506	8421506	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	8421506	8421506	A	C	SNP	RERE	NM_001042681	human	genbank	57_37b	-1	reviewed	missense	c.2061	p.S687R	1.000	HMMPfam_Atrophin-1	HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_ELM2,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,HMMSmart_SM00401,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_GATA,HMMPfam_Atrophin-1	-	no_errors	
RNF157	114804	genome.wustl.edu	37	17	74154520	74154520	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	74154520	74154520	G	A	SNP	RNF157	NM_052916	human	genbank	57_37b	-1	validated	missense	c.1367	p.S456L	0.998	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors	
SDK2	54549	genome.wustl.edu	37	17	71398170	71398170	+	Silent	SNP	G	G	C	rs9302962	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	71398170	71398170	G	C	SNP	SDK2	NM_001144952	human	genbank	57_37b	-1	provisional	silent	c.2595	p.T865	0.037	superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-		
SPTBN5	51332	genome.wustl.edu	37	15	42145904	42145904	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42145904	42145904	G	A	SNP	SPTBN5	NM_016642	human	genbank	57_37b	-1	validated	missense	c.9751	p.P3251S	0.001	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
SRP72	6731	genome.wustl.edu	37	4	57333822	57333822	+	Silent	SNP	G	G	T	rs12513091	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	57333822	57333822	G	T	SNP	SRP72	NM_006947	human	genbank	57_37b	+1	validated	silent	c.21	p.G7	0.845	NULL	superfamily_SSF48452,HMMPfam_TPR_1,HMMPfam_SRP72	-		
TARBP1	6894	genome.wustl.edu	37	1	234566040	234566040	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	234566040	234566040	G	T	SNP	TARBP1	NM_005646	human	genbank	57_37b	-1	reviewed	missense	c.2402	p.T801K	0.001	NULL	superfamily_ARM-type_fold,superfamily_SSF75217,HMMPfam_SpoU_methylase	-	no_errors	
TCF7L2	6934	genome.wustl.edu	37	10	114849224	114849224	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	114849224	114849224	T	C	SNP	TCF7L2	ENST00000355717	human	ensembl	57_37b	+1	known	silent	c.159	p.T53	1.000	HMMPfam_CTNNB1_binding	HMMPfam_CTNNB1_binding,superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors	
TTLL1	25809	genome.wustl.edu	37	22	43455432	43455432	+	Missense_Mutation	SNP	G	G	A	rs5759125	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	43455432	43455432	G	A	SNP	TTLL1	ENST00000495814	human	ensembl	57_37b	-1	known	missense	c.626	p.T209M	0.997	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	-		
UNC13B	10497	genome.wustl.edu	37	9	35398604	35398604	+	Silent	SNP	G	G	A	rs111762507	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35398604	35398604	G	A	SNP	UNC13B	NM_006377	human	genbank	57_37b	+1	reviewed	silent	c.3639	p.T1213	0.379	HMMPfam_DUF1041	HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD	-		
ZNF292	23036	genome.wustl.edu	37	6	87966725	87966747	+	Frame_Shift_Del	DEL	ATATGCTGCATTTAAAATGCAGC	ATATGCTGCATTTAAAATGCAGC	-	novel	unknown	TCGA-AN-A0XL-01A-11D-A10M-09	TCGA-AN-A0XL-10A-01D-A10M-09	ATATGCTGCATTTAAAATGCAGC	ATATGCTGCATTTAAAATGCAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	87966725	87966747	ATATGCTGCATTTAAAATGCAGC	-	DEL	ZNF292	NM_015021	human	genbank	57_37b	+1	validated	frame_shift_del	c.3378_3400	p.Y1127fs	0.807:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[87964368,87971519])	no_errors	
