Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAMTS5	11096	genome.wustl.edu	37	21	28307044	28307044	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	28307044	28307044	C	T	SNP	ADAMTS5	NM_007038	human	genbank	57_37b	-1	reviewed	missense	c.1430	p.R477Q	0.717	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors	
ADCY10	55811	genome.wustl.edu	37	1	167817639	167817639	+	Silent	SNP	A	A	G	rs203795	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	167817639	167817639	A	G	SNP	ADCY10	NM_018417	human	genbank	57_37b	-1	reviewed	silent	c.2397	p.G799	0.480	NULL	superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,superfamily_TPR-like	-		
ADCYAP1	116	genome.wustl.edu	37	18	909561	909561	+	Silent	SNP	A	A	G	rs2231187	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	909561	909561	A	G	SNP	ADCYAP1	NM_001099733	human	genbank	57_37b	+1	reviewed	silent	c.456	p.K152	1.000	PatternScan_GLUCAGON,HMMSmart_GLUCA,HMMPfam_Hormone_2	HMMSmart_GLUCA,HMMPfam_Hormone_2,PatternScan_GLUCAGON	-		
AMPD1	270	genome.wustl.edu	37	1	115236057	115236057	+	Nonsense_Mutation	SNP	G	G	A	rs17602729	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	115236057	115236057	G	A	SNP	AMPD1	NM_000036	human	genbank	57_37b	-1	reviewed	nonsense	c.34	p.Q12*	1.000	NULL	superfamily_SSF51556,HMMPfam_A_deaminase,PatternScan_A_DEAMINASE	-		
ANKMY1	51281	genome.wustl.edu	37	2	241468736	241468736	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	241468736	241468736	G	A	SNP	ANKMY1	NM_016552	human	genbank	57_37b	-1	validated	missense	c.404	p.S135L	0.002	NULL	HMMSmart_SM00698,HMMPfam_MORN,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,PatternScan_WW_DOMAIN_1,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1	-	no_errors	
ANKRD18A	253650	genome.wustl.edu	37	9	38588602	38588602	+	Missense_Mutation	SNP	T	T	C	rs2799163	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	38588602	38588602	T	C	SNP	ANKRD18A	ENST00000399703	human	ensembl	57_37b	-1	known	missense	c.2063	p.Y688C	0.002	NULL	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK	-		
AP3B1	8546	genome.wustl.edu	37	5	77412011	77412011	+	Silent	SNP	A	A	G	rs42360	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	77412011	77412011	A	G	SNP	AP3B1	NM_003664	human	genbank	57_37b	-1	reviewed	silent	c.2016	p.A672	0.902	NULL	HMMPfam_Adaptin_N,superfamily_ARM repeat	-		
ARID4B	51742	genome.wustl.edu	37	1	235383188	235383188	+	Silent	SNP	A	A	G	rs4659654	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	235383188	235383188	A	G	SNP	ARID4B	NM_016374	human	genbank	57_37b	-1	reviewed	silent	c.1503	p.D501	0.367	NULL	HMMSmart_SM00333,HMMPfam_RBB1NT,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501	-		
ART4	420	genome.wustl.edu	37	12	14982352	14982352	+	Missense_Mutation	SNP	G	G	C	rs3088190	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	14982352	14982352	G	C	SNP	ART4	NM_021071	human	genbank	57_37b	-1	reviewed	missense	c.898	p.L300V	0.000	NULL	superfamily_ADP-ribosylation,HMMPfam_ART,PatternScan_ART	-		
BAG3	9531	genome.wustl.edu	37	10	121429471	121429471	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	121429471	121429471	C	T	SNP	BAG3	NM_004281	human	genbank	57_37b	+1	reviewed	missense	c.289	p.P97S	1.000	NULL	superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_SSF63491,HMMPfam_BAG,HMMSmart_BAG	-	no_errors	
BCAT1	586	genome.wustl.edu	37	12	24970966	24970966	+	Silent	SNP	G	G	A	rs117200620	by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	24970966	24970966	G	A	SNP	BCAT1	NM_005504	human	genbank	57_37b	-1	reviewed	silent	c.1137	p.S379	0.708	superfamily_Aminotrans_IV	superfamily_Aminotrans_IV,HMMPfam_Aminotran_4,PatternScan_AA_TRANSFER_CLASS_4	-		
BRWD1	54014	genome.wustl.edu	37	21	40652142	40652142	+	Silent	SNP	G	G	A	rs2836972	byCluster;byFrequency;bySubmitter;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	40652142	40652142	G	A	SNP	BRWD1	NM_018963	human	genbank	57_37b	-1	reviewed	silent	c.864	p.Y288	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMSmart_SM00297,superfamily_Bromodomain,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-		
C1orf101	257044	genome.wustl.edu	37	1	244735858	244735858	+	Silent	SNP	A	A	G	rs10927267	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	244735858	244735858	A	G	SNP	C1orf101	NM_001130957	human	genbank	57_37b	+1	validated	silent	c.1734	p.T578	0.000	NULL	NULL	-		
C1orf175	374977	genome.wustl.edu	37	1	55118602	55118602	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	55118602	55118602	G	A	SNP	C1orf175	NM_001039464	human	genbank	57_37b	+1	validated	missense	c.3	p.M1I	0.901	NULL	superfamily_ARM repeat	-	no_errors	
C6orf211	79624	genome.wustl.edu	37	6	151789868	151789868	+	Missense_Mutation	SNP	G	G	A	rs35972078	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	151789868	151789868	G	A	SNP	C6orf211	NM_024573	human	genbank	57_37b	+1	predicted	missense	c.949	p.A317T	0.220	HMMPfam_DUF89,superfamily_DUF89	HMMPfam_DUF89,superfamily_DUF89	-		
CCDC102B	79839	genome.wustl.edu	37	18	66513615	66513615	+	Missense_Mutation	SNP	A	A	G	rs2187094	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	66513615	66513615	A	G	SNP	CCDC102B	NM_001093729	human	genbank	57_37b	+1	validated	missense	c.893	p.K298R	1.000	NULL	NULL	-		
CDCA2	157313	genome.wustl.edu	37	8	25325771	25325771	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	25325771	25325771	T	C	SNP	CDCA2	NM_152562	human	genbank	57_37b	+1	validated	missense	c.577	p.F193L	0.000	NULL	NULL	-	no_errors	
CNTN1	1272	genome.wustl.edu	37	12	41337435	41337435	+	Silent	SNP	C	C	T	rs1056019	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	41337435	41337435	C	T	SNP	CNTN1	NM_001843	human	genbank	57_37b	+1	reviewed	silent	c.1416	p.N472	0.598	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_V-set,PatternScan_N6_MTASE,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-		
COL11A1	1301	genome.wustl.edu	37	1	103354428	103354428	+	Silent	SNP	A	A	G	rs1763347	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	103354428	103354428	A	G	SNP	COL11A1	NM_080629	human	genbank	57_37b	-1	reviewed	silent	c.4548	p.G1516	0.975	HMMPfam_Collagen	HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_COLFI,HMMPfam_COLFI	-		
COL12A1	1303	genome.wustl.edu	37	6	75823017	75823017	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	75823017	75823017	G	A	SNP	COL12A1	NM_004370	human	genbank	57_37b	-1	reviewed	missense	c.7853	p.T2618M	0.991	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00210	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00210,HMMPfam_Collagen	-	no_errors	
DMXL2	23312	genome.wustl.edu	37	15	51748564	51748564	+	Silent	SNP	A	A	G	rs76659258	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	51748564	51748564	A	G	SNP	DMXL2	NM_015263	human	genbank	57_37b	-1	validated	silent	c.8274	p.L2758	0.957	superfamily_WD40 repeat-like,HMMSmart_SM00320	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-		
DNAH8	1769	genome.wustl.edu	37	6	38825329	38825329	+	Silent	SNP	C	C	T	rs2061907	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	38825329	38825329	C	T	SNP	DNAH8	NM_001371	human	genbank	57_37b	+1	validated	silent	c.5118	p.H1706	0.977	NULL	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-		
DPP10	57628	genome.wustl.edu	37	2	116510817	116510817	+	Missense_Mutation	SNP	G	G	C	rs2053724	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	116510817	116510817	G	C	SNP	DPP10	NM_020868	human	genbank	57_37b	+1	reviewed	missense	c.1018	p.A340P	0.988	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N,superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S9	-		
ENSG00000223709	0	genome.wustl.edu	37	11	89791153	89791153	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	89791153	89791153	C	G	SNP	ENSG00000223709	ENST00000436580	human	ensembl	57_37b	-1	known	missense	c.964	p.G322R	0.011	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors	
ENSG00000245648	0	genome.wustl.edu	37	12	10532434	10532434	+	RNA	SNP	A	A	G	rs2617151	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	10532434	10532434	A	G	SNP	ENSG00000245648	ENST00000500682	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000245868	0	genome.wustl.edu	37	16	23490353	23490353	+	RNA	SNP	T	T	G	rs4968008	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	23490353	23490353	T	G	SNP	ENSG00000245868	ENST00000498959	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
FAM124A	220108	genome.wustl.edu	37	13	51855020	51855020	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	51855020	51855020	G	C	SNP	FAM124A	NM_145019	human	genbank	57_37b	+1	predicted	silent	c.1377	p.S459	0.748	NULL	NULL	-	no_errors	
FREM2	341640	genome.wustl.edu	37	13	39430314	39430314	+	Missense_Mutation	SNP	C	C	T	rs9548509	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	39430314	39430314	C	T	SNP	FREM2	NM_207361	human	genbank	57_37b	+1	reviewed	missense	c.6977	p.T2326I	0.079	HMMPfam_Calx-beta,HMMSmart_SM00237	HMMSmart_SM00237,HMMPfam_Calx-beta	-		
GALNT6	11226	genome.wustl.edu	37	12	51771043	51771043	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	51771043	51771043	G	A	SNP	GALNT6	NM_007210	human	genbank	57_37b	-1	reviewed	silent	c.600	p.V200	1.000	superfamily_SSF53448,HMMPfam_Glycos_transf_2	superfamily_SSF53448,HMMPfam_Glycos_transf_2,superfamily_RicinB_like,HMMSmart_RICIN,HMMPfam_Ricin_B_lectin	-	no_errors	
GMCL1L	64396	genome.wustl.edu	37	5	177613168	177613168	+	RNA	SNP	C	C	T	rs13184406	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	177613168	177613168	C	T	SNP	GMCL1L	NR_003281	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.991	-	-	-		
GNAT3	346562	genome.wustl.edu	37	7	80088041	80088041	+	Silent	SNP	G	G	A	rs2074674	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	80088041	80088041	G	A	SNP	GNAT3	NM_001102386	human	genbank	57_37b	-1	provisional	silent	c.1011	p.D337	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_G-alpha,HMMSmart_SM00275	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_Transducin (alpha subunit) insertion domain	-		
GPR32	2854	genome.wustl.edu	37	19	51274851	51274851	+	Missense_Mutation	SNP	A	A	C	rs78840344	byCluster	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51274851	51274851	A	C	SNP	GPR32	NM_001506	human	genbank	57_37b	+1	provisional	missense	c.994	p.T332P	0.018	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-		
GRIPAP1	56850	genome.wustl.edu	37	X	48837669	48837669	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48837669	48837669	C	T	SNP	GRIPAP1	NM_020137	human	genbank	57_37b	-1	reviewed	missense	c.1888	p.E630K	1.000	NULL	superfamily_Prefoldin	-	no_errors	
GSN	2934	genome.wustl.edu	37	9	124079465	124079465	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	124079465	124079465	C	T	SNP	GSN	NM_000177	human	genbank	57_37b	+1	reviewed	silent	c.1008	p.H336	0.939	superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin	superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin	-	no_errors	
HECTD2	143279	genome.wustl.edu	37	10	93258862	93258862	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	93258862	93258862	A	G	SNP	HECTD2	NM_182765	human	genbank	57_37b	+1	validated	silent	c.1905	p.A635	1.000	superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors	
HGD	3081	genome.wustl.edu	37	3	120369683	120369683	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	120369683	120369683	G	A	SNP	HGD	NM_000187	human	genbank	57_37b	-1	reviewed	silent	c.372	p.D124	0.996	superfamily_RmlC-like cupins,HMMPfam_HgmA	superfamily_RmlC-like cupins,HMMPfam_HgmA	-	no_errors	
HSD17B13	345275	genome.wustl.edu	37	4	88231392	88231393	+	Splice_Site	INS	-	-	A	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	88231392	88231393	-	A	INS	HSD17B13	NM_178135	human	genbank	57_37b	-1	validated	splice_site_ins	c.812+2_812+1	e6+2	1.000:1.000	-	-	-	no_errors	
IL1R2	7850	genome.wustl.edu	37	2	102625086	102625089	+	Frame_Shift_Del	DEL	CAGC	CAGC	-	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	CAGC	CAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	102625086	102625089	CAGC	-	DEL	IL1R2	NM_004633	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.49_52	p.Q17fs	0.012:0.005:0.008:0.006	NULL	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	(deletion:cds_exon[102625038,102625104])	no_errors	
IL1R2	7850	genome.wustl.edu	37	2	102625095	102625095	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	102625095	102625095	G	A	SNP	IL1R2	NM_004633	human	genbank	57_37b	+1	reviewed	missense	c.58	p.A20T	0.082	NULL	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	-	no_errors	
IMMT	10989	genome.wustl.edu	37	2	86400824	86400824	+	Missense_Mutation	SNP	G	G	A	rs1050301	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	86400824	86400824	G	A	SNP	IMMT	NM_006839	human	genbank	57_37b	-1	validated	missense	c.370	p.P124S	1.000	HMMPfam_Mitofilin	HMMPfam_Mitofilin	-		
ITGA2	3673	genome.wustl.edu	37	5	52369086	52369086	+	Silent	SNP	G	G	A	rs3213805	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	52369086	52369086	G	A	SNP	ITGA2	NM_002203	human	genbank	57_37b	+1	reviewed	silent	c.2568	p.L856	0.781	HMMPfam_Integrin_alpha2,superfamily_Integrin domains	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-		
KIAA0776	23376	genome.wustl.edu	37	6	96999725	96999725	+	Silent	SNP	C	C	T	rs1127175	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	96999725	96999725	C	T	SNP	KIAA0776	NM_015323	human	genbank	57_37b	+1	validated	silent	c.1911	p.D637	0.973	NULL	HMMPfam_DUF2042	-		
KLRK1	22914	genome.wustl.edu	37	12	10532326	10532326	+	Missense_Mutation	SNP	T	T	C	rs2255336	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	10532326	10532326	T	C	SNP	KLRK1	NM_007360	human	genbank	57_37b	-1	reviewed	missense	c.214	p.T72A	0.000	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	-		
KRT18	3875	genome.wustl.edu	37	12	53344651	53344651	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53344651	53344651	C	T	SNP	KRT18	NM_000224	human	genbank	57_37b	+1	reviewed	silent	c.618	p.L206	1.000	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors	
LOC285629	0	genome.wustl.edu	37	5	160359207	160359207	+	RNA	SNP	T	T	A	rs1356282	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	160359207	160359207	T	A	SNP	LOC285629	NR_027111	human	genbank	57_37b	-1	predicted	rna	NULL	NULL	0.013	-	-	-		
LOC646096	646096	genome.wustl.edu	37	15	20488870	20488870	+	RNA	SNP	G	G	A	rs299671	byCluster;byFrequency;by2Hit2Allele	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	20488870	20488870	G	A	SNP	LOC646096	XR_040858	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.986	-	-	-		
LOC646214	646214	genome.wustl.edu	37	15	21937168	21937168	+	RNA	SNP	C	C	T	rs12185110	byCluster	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	21937168	21937168	C	T	SNP	LOC646214	NR_027053	human	genbank	57_37b	-1	validated	rna	NULL	NULL	1.000	-	-	-		
LOC646804	646804	genome.wustl.edu	37	1	171053153	171053153	+	Missense_Mutation	SNP	A	A	C	rs10910879	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	171053153	171053153	A	C	SNP	LOC646804	XM_929761	human	genbank	57_37b	+1	model	missense	c.521	p.K174T	1.000	NULL	PatternScan_RIBOSOMAL_L23	-		
LRRC49	54839	genome.wustl.edu	37	15	71276481	71276483	+	In_Frame_Del	DEL	CAA	CAA	-	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	CAA	CAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	71276481	71276483	CAA	-	DEL	LRRC49	NM_017691	human	genbank	57_37b	+1	validated	in_frame_del	c.1054_1056	p.Q354in_frame_del	1.000:1.000:0.997	NULL	superfamily_L domain-like,HMMSmart_SM00365,HMMPfam_LRR_1,HMMSmart_SM00369	(deletion:cds_exon[71276433,71276596])	no_errors	
LRRK2	120892	genome.wustl.edu	37	12	40714892	40714892	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	40714892	40714892	T	C	SNP	LRRK2	NM_198578	human	genbank	57_37b	+1	reviewed	missense	c.5072	p.I1691T	1.000	NULL	superfamily_ARM-type_fold,superfamily_SSF52058,HMMPfam_LRR_1,superfamily_SSF52540,HMMPfam_Miro,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,superfamily_WD40_like,HMMSmart_WD40,PatternScan_RCC1_2	-	no_errors	
MCTP2	55784	genome.wustl.edu	37	15	94884108	94884108	+	Silent	SNP	G	G	C	rs8025851	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	94884108	94884108	G	C	SNP	MCTP2	NM_018349	human	genbank	57_37b	+1	validated	silent	c.924	p.V308	0.220	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-		
MINA	84864	genome.wustl.edu	37	3	97664725	97664725	+	Missense_Mutation	SNP	C	C	T	rs2172257	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	97664725	97664725	C	T	SNP	MINA	NM_001042533	human	genbank	57_37b	-1	validated	missense	c.1156	p.A386T	0.163	NULL	superfamily_Clavaminate synthase-like,HMMPfam_Cupin_4	-		
MT1IP	0	genome.wustl.edu	37	16	56711558	56711558	+	RNA	SNP	C	C	T	rs4783950	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	56711558	56711558	C	T	SNP	MT1IP	NR_003669	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.006	-	-	-		
NAV3	89795	genome.wustl.edu	37	12	78444719	78444719	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	78444719	78444719	C	T	SNP	NAV3	NM_014903	human	genbank	57_37b	+1	validated	nonsense	c.2308	p.R770*	1.000	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382	-	no_errors	
NBAS	51594	genome.wustl.edu	37	2	15615910	15615910	+	Silent	SNP	A	A	G	rs1990754	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	15615910	15615910	A	G	SNP	NBAS	NM_015909	human	genbank	57_37b	-1	validated	silent	c.1242	p.S414	0.000	NULL	superfamily_WD40 repeat-like,HMMPfam_Sec39,PatternScan_RIBOSOMAL_S14	-		
NCOA1	8648	genome.wustl.edu	37	2	24905948	24905948	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	24905948	24905948	C	A	SNP	NCOA1	NM_003743	human	genbank	57_37b	+1	reviewed	missense	c.483	p.H161Q	0.958	HMMPfam_PAS,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain)	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_PAS,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_SRC-1,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_Nuc_rec_co-act,HMMPfam_DUF1518	-	no_errors	
NHLRC2	374354	genome.wustl.edu	37	10	115644040	115644040	+	Missense_Mutation	SNP	G	G	A	rs7913176	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	115644040	115644040	G	A	SNP	NHLRC2	NM_198514	human	genbank	57_37b	+1	provisional	missense	c.940	p.V314I	0.988	superfamily_NHL repeat	superfamily_Thioredoxin-like,superfamily_NHL repeat,HMMPfam_NHL	-		
NOTCH2	4853	genome.wustl.edu	37	1	120539331	120539331	+	Missense_Mutation	SNP	C	C	T	rs2124109	byCluster;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	120539331	120539331	C	T	SNP	NOTCH2	ENST00000401649	human	ensembl	57_37b	-1	known	missense	c.790	p.G264R	0.003	NULL	superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL	-		
OPA1	4976	genome.wustl.edu	37	3	193334991	193334991	+	Missense_Mutation	SNP	G	G	A	rs7624750	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	193334991	193334991	G	A	SNP	OPA1	NM_130837	human	genbank	57_37b	+1	reviewed	missense	c.473	p.S158N	1.000	NULL	HMMSmart_SM00053,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N	-		
OR1Q1	158131	genome.wustl.edu	37	9	125377610	125377610	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	125377610	125377610	G	A	SNP	OR1Q1	NM_012364	human	genbank	57_37b	+1	provisional	missense	c.594	p.M198I	0.014	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PACS2	23241	genome.wustl.edu	37	14	105856299	105856299	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105856299	105856299	C	G	SNP	PACS2	NM_001100913	human	genbank	57_37b	+1	validated	missense	c.2002	p.P668A	1.000	HMMPfam_Pacs-1	HMMPfam_Pacs-1	-	no_errors	
PBXIP1	57326	genome.wustl.edu	37	1	154918213	154918213	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	154918213	154918213	T	A	SNP	PBXIP1	NM_020524	human	genbank	57_37b	-1	provisional	missense	c.1937	p.D646V	1.000	NULL	NULL	-	no_errors	
PCDH10	57575	genome.wustl.edu	37	4	134071406	134071406	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	134071406	134071406	C	T	SNP	PCDH10	NM_032961	human	genbank	57_37b	+1	reviewed	silent	c.111	p.I37	1.000	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin,PatternScan_EGF_1	-	no_errors	
PDS5A	23244	genome.wustl.edu	37	4	39921942	39921942	+	Silent	SNP	A	A	G	rs28449663	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	39921942	39921942	A	G	SNP	PDS5A	NM_001100399	human	genbank	57_37b	-1	validated	silent	c.732	p.A244	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-		
PHF19	26147	genome.wustl.edu	37	9	123629214	123629214	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	123629214	123629214	C	G	SNP	PHF19	NM_015651	human	genbank	57_37b	-1	validated	missense	c.644	p.R215P	1.000	superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMSmart_SM00249,HMMPfam_PHD	HMMSmart_SM00333,superfamily_Tudor/PWWP/MBT,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178928079	178928079	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178928079	178928079	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1357	p.E453K	1.000	superfamily_C2_CaLB,HMMPfam_PI3K_C2	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1624	p.E542K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors	
PLA2G7	7941	genome.wustl.edu	37	6	46684222	46684222	+	Missense_Mutation	SNP	C	C	T	rs1805017	byCluster;byFrequency;bySubmitter;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	46684222	46684222	C	T	SNP	PLA2G7	NM_005084	human	genbank	57_37b	-1	reviewed	missense	c.275	p.R92H	0.000	superfamily_SSF53474,HMMPfam_PAF-AH_p_II	superfamily_SSF53474,HMMPfam_PAF-AH_p_II,PatternScan_LIPASE_SER	-		
PLEKHH2	130271	genome.wustl.edu	37	2	43931176	43931176	+	Silent	SNP	T	T	C	rs4953002	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	43931176	43931176	T	C	SNP	PLEKHH2	NM_172069	human	genbank	57_37b	+1	validated	silent	c.1707	p.N569	0.003	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00139,HMMPfam_MyTH4,HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M	-		
PMS2L11	0	genome.wustl.edu	37	7	76631509	76631509	+	Silent	SNP	C	C	T	rs7784461	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	76631509	76631509	C	T	SNP	PMS2L11	ENST00000162863	human	ensembl	57_37b	+1	known	silent	c.15	p.S5	0.488	superfamily_RING/U-box	superfamily_RING/U-box,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c	-		
PMS2L11	0	genome.wustl.edu	37	7	76631549	76631549	+	Missense_Mutation	SNP	A	A	G	rs7803074	byCluster;by2Hit2Allele;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	76631549	76631549	A	G	SNP	PMS2L11	ENST00000162863	human	ensembl	57_37b	+1	known	missense	c.55	p.I19V	0.562	superfamily_RING/U-box	HMMPfam_HATPase_c,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,superfamily_RING/U-box	-		
PPIAL4G	0	genome.wustl.edu	37	1	143767466	143767466	+	Missense_Mutation	SNP	G	G	A	rs77641628	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	143767466	143767466	G	A	SNP	PPIAL4G	NM_001123068	human	genbank	57_37b	-1	validated	missense	c.383	p.A128V	0.999	superfamily_CSA_PPIase,HMMPfam_Pro_isomerase	superfamily_CSA_PPIase,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1	-		
PREX2	80243	genome.wustl.edu	37	8	68939478	68939478	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	68939478	68939478	C	T	SNP	PREX2	NM_024870	human	genbank	57_37b	+1	validated	missense	c.463	p.R155W	1.000	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_DEP,HMMSmart_SM00049,superfamily_PDZ domain-like,HMMSmart_SM00228"	-	no_errors	
PRPSAP2	5636	genome.wustl.edu	37	17	18775900	18775900	+	Silent	SNP	A	A	G	rs4393623	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18775900	18775900	A	G	SNP	PRPSAP2	NM_002767	human	genbank	57_37b	+1	reviewed	silent	c.177	p.T59	0.177	superfamily_SSF53271,HMMPfam_RelB	superfamily_SSF53271,HMMPfam_RelB,HMMPfam_Pribosyltran	-		
PSG2	5670	genome.wustl.edu	37	19	43575874	43575874	+	Silent	SNP	T	T	C	rs3746096	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	43575874	43575874	T	C	SNP	PSG2	NM_031246	human	genbank	57_37b	-1	validated	silent	c.942	p.T314	0.000	superfamily_SSF48726	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2	-		
RNU6-42	0	genome.wustl.edu	37	3	196511870	196511870	+	RNA	SNP	C	C	T	rs10440165	byCluster	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	196511870	196511870	C	T	SNP	RNU6-42	ENST00000384165	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.000	-	-	-		
RRP1B	23076	genome.wustl.edu	37	21	45096206	45096206	+	Silent	SNP	G	G	A	rs2155722	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	45096206	45096206	G	A	SNP	RRP1B	NM_015056	human	genbank	57_37b	+1	validated	silent	c.603	p.A201	1.000	HMMPfam_Nop52	HMMPfam_Nop52	-		
RYR3	6263	genome.wustl.edu	37	15	34113010	34113010	+	Silent	SNP	C	C	T	rs2288613	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	34113010	34113010	C	T	SNP	RYR3	NM_001036	human	genbank	57_37b	+1	validated	silent	c.10812	p.F3604	1.000	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,HMMPfam_efhand,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-		
SARNP	84324	genome.wustl.edu	37	12	56151291	56151291	+	RNA	SNP	T	T	C	rs7068	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56151291	56151291	T	C	SNP	SARNP	NR_026722	human	genbank	57_37b	-1	reviewed	rna	NULL	NULL	0.956	-	-	-		
SCARNA12	677777	genome.wustl.edu	37	12	7076766	7076766	+	RNA	SNP	C	C	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	7076766	7076766	C	T	SNP	SCARNA12	NR_003010	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.968	-	-	-	no_errors	
SCFD1	23256	genome.wustl.edu	37	14	31099738	31099738	+	Missense_Mutation	SNP	A	A	G	rs229150	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	31099738	31099738	A	G	SNP	SCFD1	NM_016106	human	genbank	57_37b	+1	validated	missense	c.188	p.K63R	1.000	superfamily_Sec1-like,HMMPfam_Sec1	superfamily_Sec1-like,HMMPfam_Sec1	-		
SF3B1	23451	genome.wustl.edu	37	2	198266834	198266834	+	Missense_Mutation	SNP	T	C	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T						Unknown	Unknown	Phase_IV	Capture			1	Illumina GAIIx	Illumina GAIIx	2	198266834	198266834	T	C	SNP	SF3B1	NM_012433	human	genbank	57_37b	-1	reviewed	missense	c.2098	p.K700E	1.000	superfamily_ARM repeat,HMMPfam_HEAT	HMMPfam_SF3b1,superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors
SLC9A10	285335	genome.wustl.edu	37	3	111918215	111918215	+	Missense_Mutation	SNP	C	C	T	rs28516377	byCluster;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	111918215	111918215	C	T	SNP	SLC9A10	NM_183061	human	genbank	57_37b	-1	validated	missense	c.2476	p.G826S	0.000	NULL	HMMPfam_Na_H_Exchanger,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,PatternScan_WD_REPEATS_1,superfamily_cAMP-binding domain-like,HMMPfam_cNMP_binding	-		
SLFN12L	342615	genome.wustl.edu	37	17	33805150	33805150	+	Missense_Mutation	SNP	T	T	C	rs2304968	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	33805150	33805150	T	C	SNP	SLFN12L	NM_001145027	human	genbank	57_37b	-1	validated	missense	c.1235	p.Y412C	0.000	NULL	HMMPfam_AAA_4	-		
SNRNP200	23020	genome.wustl.edu	37	2	96964156	96964156	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	96964156	96964156	A	G	SNP	SNRNP200	NM_014014	human	genbank	57_37b	-1	reviewed	silent	c.985	p.L329	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMSmart_SM00611,HMMPfam_Sec63	-	no_errors	
SNX31	169166	genome.wustl.edu	37	8	101586133	101586133	+	Missense_Mutation	SNP	T	T	C	rs2022923	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	101586133	101586133	T	C	SNP	SNX31	NM_152628	human	genbank	57_37b	-1	validated	missense	c.1283	p.D428G	0.000	NULL	HMMSmart_SM00312,superfamily_PX domain,HMMPfam_PX	-		
SPINK5	11005	genome.wustl.edu	37	5	147488367	147488367	+	Silent	SNP	C	C	T	rs2303071	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	147488367	147488367	C	T	SNP	SPINK5	NM_001127698	human	genbank	57_37b	+1	reviewed	silent	c.1659	p.V553	0.000	HMMSmart_SM00280	superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2,HMMSmart_SM00280,PatternScan_KAZAL,HMMPfam_Kazal_1	-		
SRRM2	23524	genome.wustl.edu	37	16	2817256	2817261	+	In_Frame_Del	DEL	GCCAGC	GCCAGC	-	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	GCCAGC	GCCAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2817256	2817261	GCCAGC	-	DEL	SRRM2	NM_016333	human	genbank	57_37b	+1	validated	in_frame_del	c.6727_6732	p.SA2244in_frame_del	0.999:0.991:0.855:0.855:0.921:0.905	NULL	HMMPfam_cwf21	(deletion:cds_exon[2811562,2818262])	no_errors	
STEAP2	261729	genome.wustl.edu	37	7	89856608	89856608	+	Silent	SNP	C	C	T	rs110360	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	89856608	89856608	C	T	SNP	STEAP2	NM_001040665	human	genbank	57_37b	+1	reviewed	silent	c.816	p.L272	0.702	HMMPfam_Ferric_reduct	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_F420_oxidored,HMMPfam_Ferric_reduct	-		
SYNE1	23345	genome.wustl.edu	37	6	152652034	152652034	+	Missense_Mutation	SNP	A	A	T	rs6911096	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	152652034	152652034	A	T	SNP	SYNE1	NM_182961	human	genbank	57_37b	-1	reviewed	missense	c.13786	p.S4596T	0.000	superfamily_Spectrin repeat,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,HMMPfam_KASH	-		
TAP1	6890	genome.wustl.edu	37	6	32818088	32818102	+	Splice_Site	DEL	GGTGCTCACACTAGT	GGTGCTCACACTAGT	-	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	GGTGCTCACACTAGT	GGTGCTCACACTAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32818088	32818102	GGTGCTCACACTAGT	-	DEL	TAP1	NM_000593	human	genbank	57_37b	-1	reviewed	splice_site_del	c.1428+7_1428+1	e6-1	0.112:0.143:0.295:0.352:1.000:1.000:1.000:1.000:1.000:0.981:0.971:0.992:0.991:0.998:1.000	-	-	(deletion:intron[32816896,32818096], cds_exon[32818097,32818294])	no_errors	
TBC1D4	9882	genome.wustl.edu	37	13	76055696	76055696	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	76055696	76055696	C	T	SNP	TBC1D4	NM_014832	human	genbank	57_37b	-1	validated	missense	c.208	p.E70K	0.998	superfamily_PH domain-like,HMMSmart_SM00462	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164	-	no_errors	
TBCK	93627	genome.wustl.edu	37	4	107133919	107133919	+	Silent	SNP	A	A	G	rs17036613	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	107133919	107133919	A	G	SNP	TBCK	NM_033115	human	genbank	57_37b	-1	validated	silent	c.1659	p.G553	0.999	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC	superfamily_Kinase_like,HMMPfam_Pkinase,superfamily_RabGAP_TBC,HMMPfam_TBC,HMMSmart_TBC,superfamily_Rhodanese-like,HMMSmart_RHOD,HMMPfam_Rhodanese	-		
TEC	7006	genome.wustl.edu	37	4	48165757	48165757	+	Silent	SNP	G	G	A	rs16861083	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	48165757	48165757	G	A	SNP	TEC	NM_003215	human	genbank	57_37b	-1	reviewed	silent	c.699	p.Y233	0.989	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH2 domain	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00107,HMMPfam_BTK,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-		
TRIM77	390231	genome.wustl.edu	37	11	89447501	89447501	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	89447501	89447501	A	T	SNP	TRIM77	XM_002343107	human	genbank	57_37b	+1	model	missense	c.649	p.T217S	0.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain,HMMPfam_SPRY	-	no_errors	
TTC27	55622	genome.wustl.edu	37	2	32889484	32889484	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	32889484	32889484	A	G	SNP	TTC27	NM_017735	human	genbank	57_37b	+1	provisional	missense	c.755	p.D252G	1.000	NULL	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR,HMMPfam_TPR_2	-	no_errors	
USP15	9958	genome.wustl.edu	37	12	62785663	62785663	+	Silent	SNP	T	T	C	rs11174457	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	62785663	62785663	T	C	SNP	USP15	NM_006313	human	genbank	57_37b	+1	provisional	silent	c.2214	p.A738	0.999	superfamily_SSF54001,HMMPfam_UCH	HMMSmart_DUSP,HMMPfam_DUF1055,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,superfamily_RNA3apos_cycl/enolpyr_transf_A/B,PatternScan_UCH_2_2	-		
VARS2	57176	genome.wustl.edu	37	6	30888169	30888169	+	Silent	SNP	G	G	A	rs115583245	byCluster;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	30888169	30888169	G	A	SNP	VARS2	NM_020442	human	genbank	57_37b	+1	validated	silent	c.1353	p.L451	0.996	superfamily_Nucleotidylyl transferase,HMMPfam_tRNA-synt_1,superfamily_ValRS/IleRS/LeuRS editing domain	superfamily_Nucleotidylyl transferase,HMMPfam_tRNA-synt_1,PatternScan_AA_TRNA_LIGASE_I,superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1	-		
VPS72	6944	genome.wustl.edu	37	1	151162528	151162528	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	151162528	151162528	C	T	SNP	VPS72	NM_005997	human	genbank	57_37b	-1	provisional	missense	c.70	p.E24K	1.000	HMMPfam_YL1	HMMPfam_YL1,HMMPfam_YL1_C	-	no_errors	
WBP11P1	441818	genome.wustl.edu	37	18	30092097	30092097	+	RNA	SNP	C	C	T	rs718721	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	30092097	30092097	C	T	SNP	WBP11P1	NR_003558	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.997	-	-	-		
ZG16	123887	genome.wustl.edu	37	16	29790955	29790955	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	29790955	29790955	T	C	SNP	ZG16	NM_152338	human	genbank	57_37b	+1	validated	missense	c.185	p.V62A	0.295	superfamily_Mannose-bd_lectin,HMMPfam_Jacalin	superfamily_Mannose-bd_lectin,HMMPfam_Jacalin	-	no_errors	
ZMYM2	7750	genome.wustl.edu	37	13	20641448	20641448	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	20641448	20641448	A	G	SNP	ZMYM2	NM_003453	human	genbank	57_37b	+1	validated	missense	c.3371	p.H1124R	1.000	NULL	HMMPfam_zf-FCS,HMMSmart_TRASH	-	no_errors	
ZMYM4	9202	genome.wustl.edu	37	1	35854578	35854578	+	Silent	SNP	T	T	C	rs61751000	byCluster;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	35854578	35854578	T	C	SNP	ZMYM4	NM_005095	human	genbank	57_37b	+1	validated	silent	c.2331	p.Y777	1.000	HMMPfam_zf-FCS,HMMSmart_SM00746	HMMPfam_zf-FCS,HMMSmart_SM00746,PatternScan_GLYCO_HORMONE_BETA_1	-		
ZNF83	55769	genome.wustl.edu	37	19	53116060	53116060	+	RNA	SNP	G	G	A	rs1046648	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53116060	53116060	G	A	SNP	ZNF83	NR_003936	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-		
ZUFSP	221302	genome.wustl.edu	37	6	116973182	116973182	+	Missense_Mutation	SNP	T	T	C	rs4946188	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	116973182	116973182	T	C	SNP	ZUFSP	NM_145062	human	genbank	57_37b	-1	provisional	missense	c.1135	p.N379D	0.347	HMMPfam_Peptidase_C78	HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_Peptidase_C78	-		
