Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCC9	10060	genome.wustl.edu	37	12	21958207	21958207	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	21958207	21958207	T	A	SNP	ABCC9	NM_005691	human	genbank	57_37b	-1	reviewed	missense	c.4551	p.L1517F	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
AMY2B	280	genome.wustl.edu	37	1	104114362	104114362	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	104114362	104114362	T	C	SNP	AMY2B	NM_020978	human	genbank	57_37b	+1	reviewed	silent	c.138	p.Y46	0.995	superfamily_(Trans)glycosidases,HMMPfam_Alpha-amylase,HMMSmart_SM00642	superfamily_(Trans)glycosidases,HMMPfam_Alpha-amylase,HMMSmart_SM00642,superfamily_Glycosyl hydrolase domain,HMMSmart_SM00632,HMMPfam_Alpha-amylase_C	-	no_errors	
ARL5A	26225	genome.wustl.edu	37	2	152668924	152668924	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	152668924	152668924	T	C	SNP	ARL5A	NM_012097	human	genbank	57_37b	-1	reviewed	missense	c.286	p.R96G	1.000	HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_ARF	-	no_errors	
BAT2L1	0	genome.wustl.edu	37	9	134346218	134346218	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	134346218	134346218	C	A	SNP	BAT2L1	NM_013318	human	genbank	57_37b	+1	validated	missense	c.1955	p.P652Q	0.985	NULL	HMMPfam_BAT2_N	-	no_errors	
C9orf102	375748	genome.wustl.edu	37	9	98774568	98774568	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	98774568	98774568	C	T	SNP	C9orf102	ENST00000407474	human	ensembl	57_37b	+1	known	missense	c.679	p.H227Y	0.001	NULL	NULL	-	no_errors	
CAPN10	11132	genome.wustl.edu	37	2	241534504	241534504	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	241534504	241534504	G	C	SNP	CAPN10	NM_023083	human	genbank	57_37b	+1	reviewed	missense	c.1061	p.G354A	1.000	superfamily_Calpain large subunit middle domain (domain III),HMMPfam_Calpain_III,HMMSmart_SM00720	HMMSmart_SM00230,superfamily_Cysteine proteinases,HMMPfam_Peptidase_C2,PatternScan_THIOL_PROTEASE_CYS,superfamily_Calpain large subunit middle domain (domain III),HMMPfam_Calpain_III,HMMSmart_SM00720	-	no_errors	
CCDC40	55036	genome.wustl.edu	37	17	78022365	78022365	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	78022365	78022365	G	A	SNP	CCDC40	ENST00000269336	human	ensembl	57_37b	+1	known	silent	c.9	p.S3	0.000	NULL	HMMPfam_BRE1	-	no_errors	
CDHR3	0	genome.wustl.edu	37	7	105655584	105655584	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	105655584	105655584	C	-	DEL	CDHR3	NM_152750	human	genbank	57_37b	+1	validated	frame_shift_del	c.1252	p.P418fs	0.389	superfamily_Cadherin-like,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	(deletion:cds_exon[105655557,105655659])	no_errors	
CDK2	1017	genome.wustl.edu	37	12	56361872	56361872	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56361872	56361872	G	-	DEL	CDK2	NM_001798	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.234	p.V79fs	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[56361833,56361953])	no_errors	
CNTROB	116840	genome.wustl.edu	37	17	7840531	7840531	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7840531	7840531	A	G	SNP	CNTROB	ENST00000380262	human	ensembl	57_37b	+1	known	missense	c.878	p.N293S	0.111	NULL	NULL	-	no_errors	
DDX21	9188	genome.wustl.edu	37	10	70737298	70737298	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	70737298	70737298	G	A	SNP	DDX21	NM_004728	human	genbank	57_37b	+1	reviewed	missense	c.1756	p.V586M	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_GUCT	-	no_errors	
ERBB2IP	55914	genome.wustl.edu	37	5	65346627	65346628	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	65346627	65346628	AG	-	DEL	ERBB2IP	NM_018695	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1920_1921	p.D641fs	0.607:1.000	NULL	superfamily_SSF52058,HMMPfam_LRR_1,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ	(deletion:cds_exon[65346611,65346794])	no_errors	
GALNTL6	0	genome.wustl.edu	37	4	173961206	173961206	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	173961206	173961206	T	A	SNP	GALNTL6	NM_001034845	human	genbank	57_37b	+1	validated	silent	c.1761	p.I587	0.999	superfamily_Ricin B-like lectins	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin	-	no_errors	
GATA3	2625	genome.wustl.edu	37	10	8115978	8115979	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8115978	8115979	-	T	INS	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1327_1328	p.M443fs	1.000:1.000	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors	
GPX5	2880	genome.wustl.edu	37	6	28501767	28501767	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	28501767	28501767	G	T	SNP	GPX5	NM_001509	human	genbank	57_37b	+1	reviewed	missense	c.489	p.L163F	0.701	superfamily_Thiordxn-like_fd	superfamily_Thiordxn-like_fd,HMMPfam_GSHPx,PatternScan_GLUTATHIONE_PEROXID_1,PatternScan_GLUTATHIONE_PEROXID_2	-	no_errors	
HCFC1	3054	genome.wustl.edu	37	X	153220767	153220767	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153220767	153220767	G	T	SNP	HCFC1	NM_005334	human	genbank	57_37b	-1	reviewed	missense	c.3083	p.T1028K	0.999	NULL	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMPfam_Kelch_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
HOMER2	9455	genome.wustl.edu	37	15	83523512	83523512	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	83523512	83523512	G	A	SNP	HOMER2	NM_199330	human	genbank	57_37b	-1	reviewed	missense	c.568	p.L190F	1.000	NULL	HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like	-	no_errors	
IARS	3376	genome.wustl.edu	37	9	95007281	95007281	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	95007281	95007281	G	C	SNP	IARS	NM_002161	human	genbank	57_37b	-1	reviewed	missense	c.2864	p.T955R	0.070	NULL	superfamily_SSF52374,HMMPfam_tRNA-synt_1,PatternScan_AA_TRNA_LIGASE_I,superfamily_ValRS_IleRS_edit,superfamily_tRNAsyn_1a_bind,HMMPfam_Anticodon_1	-	no_errors	
ITGA7	3679	genome.wustl.edu	37	12	56091275	56091275	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56091275	56091275	C	T	SNP	ITGA7	NM_001144996	human	genbank	57_37b	-1	reviewed	missense	c.1477	p.D493N	0.998	HMMSmart_SM00191,HMMPfam_Integrin_alpha2,superfamily_Integrin domains	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors	
KIF4A	24137	genome.wustl.edu	37	X	69550016	69550016	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	69550016	69550016	G	C	SNP	KIF4A	NM_012310	human	genbank	57_37b	+1	validated	missense	c.905	p.G302A	1.000	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors	
KRT25	147183	genome.wustl.edu	37	17	38910684	38910684	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	38910684	38910684	G	T	SNP	KRT25	NM_181534	human	genbank	57_37b	-1	reviewed	missense	c.466	p.L156M	0.205	HMMPfam_Filament	PatternScan_IF,HMMPfam_Filament	-	no_errors	
LETM1	3954	genome.wustl.edu	37	4	1821128	1821130	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	1821128	1821130	CTT	-	DEL	LETM1	NM_012318	human	genbank	57_37b	-1	reviewed	in_frame_del	c.1680_1678	p.K560in_frame_del	0.653:0.654:0.678	NULL	HMMPfam_LETM1,PatternScan_EF_HAND_1	(deletion:cds_exon[1821065,1821199])	no_errors	
LMLN	89782	genome.wustl.edu	37	3	197765972	197765972	+	RNA	DEL	C	C	-	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	197765972	197765972	C	-	DEL	LMLN	NR_026786	human	genbank	57_37b	+1	reviewed	rna	NULL	NULL	0.998	-	-	(deletion:rna[197765438,197770591])	no_errors	
LOC100287951	0	genome.wustl.edu	37	4	10413250	10413250	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	10413250	10413250	C	T	SNP	LOC100287951	XM_002342440	human	genbank	57_37b	+1	model	silent	c.327	p.V109	0.398	HMMPfam_Tctex-1	HMMPfam_Tctex-1	-	no_errors	
LOC100288475	0	genome.wustl.edu	37	4	52917745	52917745	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	52917745	52917745	C	G	SNP	LOC100288475	XM_002342452	human	genbank	57_37b	-1	model	missense	c.446	p.G149A	0.016	NULL	NULL	-	no_errors	
MAX	4149	genome.wustl.edu	37	14	65568325	65568325	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	65568325	65568325	T	C	SNP	MAX	ENST00000441116	human	ensembl	57_37b	-1	known	missense	c.25	p.I9V	0.999	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353	-	no_errors	
MDM1	56890	genome.wustl.edu	37	12	68720671	68720671	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	68720671	68720671	G	A	SNP	MDM1	NM_017440	human	genbank	57_37b	-1	reviewed	silent	c.264	p.A88	0.000	NULL	NULL	-	no_errors	
MFSD8	256471	genome.wustl.edu	37	4	128842873	128842873	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	128842873	128842873	G	A	SNP	MFSD8	NM_152778	human	genbank	57_37b	-1	reviewed	missense	c.1156	p.L386F	0.722	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	no_errors	
MVP	9961	genome.wustl.edu	37	16	29848117	29848117	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	29848117	29848117	G	A	SNP	MVP	NM_005115	human	genbank	57_37b	+1	reviewed	nonsense	c.747	p.W249*	1.000	HMMPfam_Vault	HMMPfam_Vault	-	no_errors	
NLRC4	58484	genome.wustl.edu	37	2	32476071	32476071	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	32476071	32476071	G	A	SNP	NLRC4	ENST00000360906	human	ensembl	57_37b	-1	known	missense	c.862	p.R288W	0.614	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT	HMMPfam_CARD,superfamily_DEATH domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like	-	no_errors	
OBSCN	84033	genome.wustl.edu	37	1	228479785	228479785	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228479785	228479785	G	T	SNP	OBSCN	NM_001098623	human	genbank	57_37b	+1	reviewed	missense	c.10526	p.G3509V	0.015	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
OR5K3	403277	genome.wustl.edu	37	3	98110241	98110241	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	98110241	98110241	C	A	SNP	OR5K3	NM_001005516	human	genbank	57_37b	+1	provisional	silent	c.732	p.L244	0.010	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
PCDHA2	56146	genome.wustl.edu	37	5	140175999	140175999	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140175999	140175999	G	A	SNP	PCDHA2	NM_018905	human	genbank	57_37b	+1	reviewed	missense	c.1450	p.A484T	0.280	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PCDHB4	56131	genome.wustl.edu	37	5	140501710	140501710	+	Missense_Mutation	SNP	G	G	T	rs77188774	byCluster;by1000genomes	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140501710	140501710	G	T	SNP	PCDHB4	NM_018938	human	genbank	57_37b	+1	reviewed	missense	c.130	p.V44L	0.548	HMMPfam_Cadherin_2,superfamily_Cadherin	HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA	-		
PPM1E	22843	genome.wustl.edu	37	17	57049625	57049625	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	57049625	57049625	C	G	SNP	PPM1E	NM_014906	human	genbank	57_37b	+1	reviewed	missense	c.1105	p.P369A	1.000	superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C	superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C,PatternScan_PP2C	-	no_errors	
PRDM11	56981	genome.wustl.edu	37	11	45245850	45245850	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	45245850	45245850	G	A	SNP	PRDM11	NM_020229	human	genbank	57_37b	+1	validated	silent	c.927	p.V309	0.451	NULL	NULL	-	no_errors	
PRKACG	5568	genome.wustl.edu	37	9	71628799	71628799	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	71628799	71628799	G	A	SNP	PRKACG	NM_002732	human	genbank	57_37b	-1	reviewed	silent	c.210	p.Y70	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X	-	no_errors	
PRSS12	8492	genome.wustl.edu	37	4	119203269	119203269	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	119203269	119203269	C	T	SNP	PRSS12	NM_003619	human	genbank	57_37b	-1	reviewed	missense	c.2450	p.R817H	0.262	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
QARS	5859	genome.wustl.edu	37	3	49140800	49140800	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49140800	49140800	A	C	SNP	QARS	NM_005051	human	genbank	57_37b	-1	reviewed	missense	c.494	p.I165S	1.000	HMMPfam_tRNA_synt_1c_R2	HMMPfam_tRNA_synt_1c_R1,HMMPfam_tRNA_synt_1c_R2,superfamily_SSF52374,HMMPfam_tRNA-synt_1c,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_tRNA-synt_1c_C,superfamily_Ribosomal_L25rel	-	no_errors	
RAB5C	5878	genome.wustl.edu	37	17	40280782	40280783	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40280782	40280783	-	T	INS	RAB5C	NM_004583	human	genbank	57_37b	-1	validated	frame_shift_ins	c.203_202	p.T68fs	1.000:1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	-	no_errors	
RAP2A	5911	genome.wustl.edu	37	13	98086995	98086995	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	98086995	98086995	C	T	SNP	RAP2A	NM_021033	human	genbank	57_37b	+1	validated	nonsense	c.271	p.Q91*	1.000	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	-	no_errors	
RCN3	57333	genome.wustl.edu	37	19	50045878	50045878	+	Missense_Mutation	SNP	C	T	T	rs34654230	byCluster;byFrequency;by1000genomes	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50045878	50045878	C	T	SNP	RCN3	NM_020650	human	genbank	57_37b	+1	provisional	missense	c.748	p.R250W	0.998	superfamily_SSF47473	superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,PatternScan_ER_TARGET	-		
RYR3	6263	genome.wustl.edu	37	15	34130643	34130643	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	34130643	34130643	C	T	SNP	RYR3	NM_001036	human	genbank	57_37b	+1	validated	silent	c.12462	p.T4154	0.055	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,HMMPfam_efhand,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors	
SEC61B	10952	genome.wustl.edu	37	9	101992703	101992703	+	Silent	SNP	G	G	A	rs113789599	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	101992703	101992703	G	A	SNP	SEC61B	NM_006808	human	genbank	57_37b	+1	reviewed	silent	c.288	p.S96	0.954	NULL	HMMPfam_Sec61_beta	-		
SLC20A1	6574	genome.wustl.edu	37	2	113417065	113417065	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	113417065	113417065	A	C	SNP	SLC20A1	NM_005415	human	genbank	57_37b	+1	provisional	missense	c.1333	p.M445L	1.000	HMMPfam_PHO4	HMMPfam_PHO4	-	no_errors	
SLC6A5	9152	genome.wustl.edu	37	11	20652303	20652303	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	20652303	20652303	C	T	SNP	SLC6A5	NM_004211	human	genbank	57_37b	+1	reviewed	silent	c.1566	p.S522	0.129	HMMPfam_SNF	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2,PatternScan_ASP_GLU_RACEMASE_1	-	no_errors	
SMAD1	4086	genome.wustl.edu	37	4	146475147	146475147	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	146475147	146475147	C	T	SNP	SMAD1	NM_001003688	human	genbank	57_37b	+1	reviewed	silent	c.1209	p.V403	0.993	superfamily_SMAD/FHA domain,HMMPfam_MH2,HMMSmart_SM00524	superfamily_SMAD MH1 domain,HMMSmart_SM00523,HMMPfam_MH1,superfamily_SMAD/FHA domain,HMMPfam_MH2,HMMSmart_SM00524	-	no_errors	
SPTB	6710	genome.wustl.edu	37	14	65252609	65252609	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	65252609	65252609	G	A	SNP	SPTB	NM_001024858	human	genbank	57_37b	-1	reviewed	missense	c.3622	p.R1208W	1.000	HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors	
SRPRB	58477	genome.wustl.edu	37	3	133524840	133524859	+	Frame_Shift_Del	DEL	ACGCTAGGTAAAAGGCGGCC	ACGCTAGGTAAAAGGCGGCC	-	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	ACGCTAGGTAAAAGGCGGCC	ACGCTAGGTAAAAGGCGGCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	133524840	133524859	ACGCTAGGTAAAAGGCGGCC	-	DEL	SRPRB	NM_021203	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.148_154	p.T50fs	1.000:1.000:1.000:1.000:1.000:0.985:0.999	NULL	HMMPfam_SRPRB,superfamily_P-loop containing nucleoside triphosphate hydrolases	(deletion:cds_exon[133524693,133524846], intron[133524847,133525452])	no_errors	
TDRD6	221400	genome.wustl.edu	37	6	46657105	46657105	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	46657105	46657105	T	A	SNP	TDRD6	NM_001010870	human	genbank	57_37b	+1	validated	missense	c.1240	p.S414T	0.521	NULL	HMMSmart_TUDOR,HMMPfam_TUDOR,superfamily_SSF63748	-	no_errors	
TM7SF2	7108	genome.wustl.edu	37	11	64883379	64883379	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64883379	64883379	C	T	SNP	TM7SF2	NM_003273	human	genbank	57_37b	+1	validated	silent	c.1111	p.L371	1.000	HMMPfam_ERG4_ERG24	HMMPfam_ERG4_ERG24,PatternScan_STEROL_REDUCT_1,PatternScan_STEROL_REDUCT_2	-	no_errors	
TREM1	54210	genome.wustl.edu	37	6	41248835	41248835	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	41248835	41248835	G	A	SNP	TREM1	NM_018643	human	genbank	57_37b	-1	provisional	missense	c.463	p.P155S	0.000	NULL	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409	-	no_errors	
UTRN	7402	genome.wustl.edu	37	6	144838085	144838085	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	144838085	144838085	G	T	SNP	UTRN	NM_007124	human	genbank	57_37b	+1	reviewed	splice_site	c.5541+1	e38+1	1.000	-	-	-	no_errors	
ZCCHC6	79670	genome.wustl.edu	37	9	88937958	88937958	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	88937958	88937958	C	T	SNP	ZCCHC6	NM_024617	human	genbank	57_37b	-1	validated	missense	c.2707	p.A903T	0.008	NULL	HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain,HMMPfam_PAP_assoc,HMMPfam_zf-CCHC,HMMSmart_SM00343,HMMPfam_NTP_transf_2,superfamily_Retrovirus zinc finger-like domains	-	no_errors	
ZNF717	377064	genome.wustl.edu	37	3	75786521	75786521	+	Silent	SNP	G	T	T	rs76396775	byCluster	TCGA-AO-A03P-01A-11W-A019-09	TCGA-AO-A03P-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	75786521	75786521	G	T	SNP	ZNF717	NM_001128223	human	genbank	57_37b	-1	validated	silent	c.2253	p.T751	0.683	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-		
