Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACP5	54	genome.wustl.edu	37	19	11686061	11686061	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11686061	11686061	G	C	SNP	ACP5	NM_001111034	human	genbank	57_37b	-1	reviewed	missense	c.742	p.Q248E	0.803	superfamily_SSF56300	superfamily_SSF56300,HMMPfam_Metallophos	-	no_errors	
AHNAK	79026	genome.wustl.edu	37	11	62288240	62288240	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62288240	62288240	C	G	SNP	AHNAK	NM_001620	human	genbank	57_37b	-1	validated	missense	c.13649	p.G4550A	0.066	NULL	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_CheC	-	no_errors	
ARHGEF6	9459	genome.wustl.edu	37	X	135764932	135764932	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	135764932	135764932	A	T	SNP	ARHGEF6	NM_004840	human	genbank	57_37b	-1	reviewed	missense	c.1464	p.S488R	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
ARL11	115761	genome.wustl.edu	37	13	50204809	50204809	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	50204809	50204809	G	A	SNP	ARL11	NM_138450	human	genbank	57_37b	+1	validated	missense	c.226	p.D76N	1.000	HMMPfam_Arf,HMMSmart_ARF,superfamily_SSF52540	PatternScan_ARF,HMMPfam_Arf,HMMSmart_ARF,superfamily_SSF52540	-	no_errors	
ATP1A3	478	genome.wustl.edu	37	19	42482310	42482310	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42482310	42482310	C	T	SNP	ATP1A3	NM_152296	human	genbank	57_37b	-1	reviewed	missense	c.1799	p.G600D	1.000	superfamily_SSF81665,superfamily_SSF56784,HMMPfam_Hydrolase	HMMPfam_Cation_ATPase_N,superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Cation_ATPase_C	-	no_errors	
BCL9	607	genome.wustl.edu	37	1	147092484	147092487	+	Frame_Shift_Del	DEL	GGGG	GGGG	-	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	GGGG	GGGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	147092484	147092487	GGGG	-	DEL	BCL9	NM_004326	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2523_2526	p.R843fs	1.000:1.000:1.000:0.967	NULL	NULL	(deletion:cds_exon[147090622,147092863])	no_errors	
BCL9	607	genome.wustl.edu	37	1	147092488	147092488	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	147092488	147092488	C	T	SNP	BCL9	NM_004326	human	genbank	57_37b	+1	reviewed	missense	c.2527	p.R843W	1.000	NULL	NULL	-	no_errors	
C12orf63	374467	genome.wustl.edu	37	12	97043730	97043733	+	Frame_Shift_Del	DEL	ACAA	ACAA	-	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	ACAA	ACAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	97043730	97043733	ACAA	-	DEL	C12orf63	NM_198520	human	genbank	57_37b	+1	validated	frame_shift_del	c.27_30	p.T11fs	0.000:0.000:0.000:0.000	NULL	NULL	(deletion:cds_exon[97043704,97043850])	no_errors	
C1orf54	79630	genome.wustl.edu	37	1	150246528	150246528	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150246528	150246528	G	A	SNP	C1orf54	NM_024579	human	genbank	57_37b	+1	validated	missense	c.85	p.E29K	0.024	NULL	NULL	-	no_errors	
C1orf83	127428	genome.wustl.edu	37	1	54534542	54534542	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	54534542	54534542	C	A	SNP	C1orf83	NM_153035	human	genbank	57_37b	+1	predicted	silent	c.216	p.S72	0.999	HMMPfam_TFIIS,superfamily_Conserved domain common to transcription factors TFIIS elongin A CRSP70,HMMSmart_SM00509	HMMPfam_TFIIS,superfamily_Conserved domain common to transcription factors TFIIS elongin A CRSP70,HMMSmart_SM00509	-	no_errors	
C20orf26	26074	genome.wustl.edu	37	20	20232263	20232263	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	20232263	20232263	T	C	SNP	C20orf26	NM_015585	human	genbank	57_37b	+1	validated	silent	c.2184	p.Y728	0.997	superfamily_FAD/NAD(P)-binding domain	superfamily_Acyl-CoA N-acyltransferases (Nat),superfamily_FAD/NAD(P)-binding domain	-	no_errors	
C20orf70	140683	genome.wustl.edu	37	20	31757009	31757009	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	31757009	31757009	T	C	SNP	C20orf70	NM_080574	human	genbank	57_37b	+1	validated	missense	c.58	p.S20P	0.000	NULL	HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal_perm-incr_a/b_dom	-	no_errors	
C9orf43	257169	genome.wustl.edu	37	9	116191234	116191234	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	116191234	116191234	A	C	SNP	C9orf43	NM_152786	human	genbank	57_37b	+1	predicted	missense	c.1162	p.S388R	0.000	NULL	NULL	-	no_errors	
CES7	221223	genome.wustl.edu	37	16	55903634	55903634	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	55903634	55903634	C	T	SNP	CES7	NM_001143685	human	genbank	57_37b	-1	validated	missense	c.440	p.G147D	1.000	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1	-	no_errors	
CHRM1	1128	genome.wustl.edu	37	11	62678402	62678402	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62678402	62678402	C	A	SNP	CHRM1	NM_000738	human	genbank	57_37b	-1	reviewed	missense	c.171	p.K57N	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
CHRNA1	1134	genome.wustl.edu	37	2	175618463	175618463	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	175618463	175618463	G	A	SNP	CHRNA1	NM_001039523	human	genbank	57_37b	-1	reviewed	silent	c.621	p.S207	0.323	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	-	no_errors	
CLUL1	27098	genome.wustl.edu	37	18	618071	618071	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	618071	618071	G	C	SNP	CLUL1	NM_014410	human	genbank	57_37b	+1	validated	missense	c.71	p.W24S	0.982	HMMPfam_Clusterin	HMMPfam_Clusterin,HMMSmart_CLb,HMMSmart_CLa	-	no_errors	
CNTLN	54875	genome.wustl.edu	37	9	17409379	17409379	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	17409379	17409379	G	C	SNP	CNTLN	NM_017738	human	genbank	57_37b	+1	validated	missense	c.2704	p.D902H	0.945	NULL	superfamily_Prefoldin	-	no_errors	
COL19A1	1310	genome.wustl.edu	37	6	70610189	70610189	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	70610189	70610189	C	G	SNP	COL19A1	NM_001858	human	genbank	57_37b	+1	reviewed	silent	c.225	p.T75	0.962	HMMSmart_TSPN,superfamily_ConA_like_lec_gl	HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Collagen	-	no_errors	
COX15	1355	genome.wustl.edu	37	10	101483877	101483877	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	101483877	101483877	G	C	SNP	COX15	NM_078470	human	genbank	57_37b	-1	reviewed	missense	c.586	p.L196V	1.000	HMMPfam_COX15-CtaA	superfamily_Trypsin-like serine proteases,HMMPfam_COX15-CtaA	-	no_errors	
CYP2D6	1565	genome.wustl.edu	37	22	42525144	42525145	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	42525144	42525145	-	T	INS	CYP2D6	NM_000106	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.396_395	p.R133fs	0.995:1.000	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors	
DCP1A	55802	genome.wustl.edu	37	3	53326438	53326438	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	53326438	53326438	C	T	SNP	DCP1A	NM_018403	human	genbank	57_37b	-1	reviewed	silent	c.1044	p.T348	0.206	NULL	HMMPfam_DCP1,superfamily_PH domain-like	-	no_errors	
DIO1	1733	genome.wustl.edu	37	1	54371907	54371907	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	54371907	54371907	G	A	SNP	DIO1	NM_001039715	human	genbank	57_37b	+1	reviewed	silent	c.477	p.Q159	0.095	HMMPfam_T4_deiodinase	HMMPfam_T4_deiodinase	-	no_errors	
DNAH10	196385	genome.wustl.edu	37	12	124382415	124382428	+	Frame_Shift_Del	DEL	CAGAAATTGAGGCG	CAGAAATTGAGGCG	-	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	CAGAAATTGAGGCG	CAGAAATTGAGGCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	124382415	124382428	CAGAAATTGAGGCG	-	DEL	DNAH10	NM_207437	human	genbank	57_37b	+1	validated	frame_shift_del	c.9025_9038	p.K3010fs	1.000:1.000:1.000:1.000:1.000:0.887:0.917:0.991:0.988:0.998:0.999:0.819:0.999:1.000	NULL	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	(deletion:cds_exon[124382317,124382514])	no_errors	
DNAH9	1770	genome.wustl.edu	37	17	11520810	11520810	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	11520810	11520810	G	A	SNP	DNAH9	NM_001372	human	genbank	57_37b	+1	reviewed	silent	c.987	p.P329	0.000	HMMPfam_DHC_N1	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2	-	no_errors	
DSEL	92126	genome.wustl.edu	37	18	65178887	65178887	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	65178887	65178887	C	-	DEL	DSEL	NM_032160	human	genbank	57_37b	-1	validated	frame_shift_del	c.2989	p.A997fs	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases	(deletion:cds_exon[65178207,65181875])	no_errors	
EIF2AK1	27102	genome.wustl.edu	37	7	6077156	6077156	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	6077156	6077156	C	T	SNP	EIF2AK1	NM_014413	human	genbank	57_37b	-1	reviewed	splice_site	c.1232-1	e11-1	1.000	-	-	-	no_errors	
EMR1	2015	genome.wustl.edu	37	19	6926403	6926403	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6926403	6926403	C	A	SNP	EMR1	NM_001974	human	genbank	57_37b	+1	reviewed	missense	c.2013	p.F671L	0.083	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_2,superfamily_Family A G protein-coupled receptor-like,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	
ENSG00000245346	0	genome.wustl.edu	37	19	37239751	37239751	+	RNA	SNP	C	C	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	37239751	37239751	C	A	SNP	ENSG00000245346	ENST00000500002	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.037	-	-	-	no_errors	
ENSG00000246594	0	genome.wustl.edu	37	6	144416725	144416725	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	144416725	144416725	G	A	SNP	ENSG00000246594	ENST00000499661	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	
EPS8L1	54869	genome.wustl.edu	37	19	55598949	55598949	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55598949	55598949	G	C	SNP	EPS8L1	NM_133180	human	genbank	57_37b	+1	reviewed	missense	c.2139	p.K713N	1.000	NULL	HMMSmart_SM00462,HMMPfam_PTB,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1	-	no_errors	
FAM53B	9679	genome.wustl.edu	37	10	126370497	126370497	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	126370497	126370497	G	T	SNP	FAM53B	NM_014661	human	genbank	57_37b	-1	validated	nonsense	c.585	p.C195*	0.996	NULL	NULL	-	no_errors	
FAM5C	339479	genome.wustl.edu	37	1	190068109	190068109	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	190068109	190068109	G	A	SNP	FAM5C	NM_199051	human	genbank	57_37b	-1	provisional	missense	c.1340	p.S447F	0.143	NULL	HMMPfam_MACPF,HMMSmart_SM00457	-	no_errors	
FAM90A1	55138	genome.wustl.edu	37	12	8376138	8376138	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	8376138	8376138	C	A	SNP	FAM90A1	NM_018088	human	genbank	57_37b	-1	validated	missense	c.339	p.Q113H	0.000	NULL	NULL	-	no_errors	
FARP1	10160	genome.wustl.edu	37	13	99061690	99061690	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	99061690	99061690	G	A	SNP	FARP1	NM_005766	human	genbank	57_37b	+1	reviewed	missense	c.1513	p.D505N	0.997	NULL	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
FBXO21	23014	genome.wustl.edu	37	12	117604733	117604733	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	117604733	117604733	A	G	SNP	FBXO21	NM_033624	human	genbank	57_37b	-1	reviewed	missense	c.1163	p.M388T	1.000	superfamily_F-box domain	superfamily_F-box domain,HMMPfam_F-box,HMMPfam_YccV-like	-	no_errors	
FGFBP1	9982	genome.wustl.edu	37	4	15938036	15938046	+	Frame_Shift_Del	DEL	CAGTAGCAGCC	CAGTAGCAGCC	-	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	CAGTAGCAGCC	CAGTAGCAGCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	15938036	15938046	CAGTAGCAGCC	-	DEL	FGFBP1	NM_005130	human	genbank	57_37b	-1	validated	frame_shift_del	c.220_210	p.W70fs	0.006:0.000:0.004:0.001:0.004:0.010:0.013:0.003:0.063:0.278:0.985	HMMPfam_FGF-BP1	HMMPfam_FGF-BP1	(deletion:cds_exon[15937551,15938255])	no_errors	
FRMD6	122786	genome.wustl.edu	37	14	52186813	52186813	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	52186813	52186813	G	C	SNP	FRMD6	NM_001042481	human	genbank	57_37b	+1	validated	silent	c.1041	p.L347	1.000	superfamily_SSF50729	HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,superfamily_FERM_3-hlx,HMMPfam_FERM_M,superfamily_SSF50729,HMMPfam_FERM_C	-	no_errors	
FXR1	8087	genome.wustl.edu	37	3	180675642	180675642	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	180675642	180675642	G	C	SNP	FXR1	NM_005087	human	genbank	57_37b	+1	reviewed	missense	c.916	p.E306Q	1.000	superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMPfam_KH_1,HMMSmart_SM00322	HMMPfam_Agenet,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1	-	no_errors	
GJB5	2709	genome.wustl.edu	37	1	35223621	35223621	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	35223621	35223621	C	A	SNP	GJB5	NM_005268	human	genbank	57_37b	+1	provisional	missense	c.690	p.H230Q	0.000	NULL	HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2	-	no_errors	
GRB2	2885	genome.wustl.edu	37	17	73316459	73316459	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	73316459	73316459	C	T	SNP	GRB2	NM_002086	human	genbank	57_37b	-1	reviewed	missense	c.644	p.R215Q	1.000	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors	
GRIA3	2892	genome.wustl.edu	37	X	122532651	122532665	+	Frame_Shift_Del	DEL	AATGGTAAAGACCAC	AATGGTAAAGACCAC	-	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	AATGGTAAAGACCAC	AATGGTAAAGACCAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	122532651	122532665	AATGGTAAAGACCAC	-	DEL	GRIA3	ENST00000264357	human	ensembl	57_37b	+1	known	frame_shift_del	c.1077_1080	p.M360fs	1.000:1.000:1.000:1.000	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	(deletion:cds_exon[122532487,122532654], intron[122532655,122536844])	no_errors	
HIVEP3	59269	genome.wustl.edu	37	1	42046159	42046159	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	42046159	42046159	C	A	SNP	HIVEP3	NM_024503	human	genbank	57_37b	-1	validated	missense	c.4310	p.S1437I	1.000	NULL	PatternScan_AIPM_HOMOCIT_SYNTH_1,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	
IFNE	338376	genome.wustl.edu	37	9	21481513	21481513	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	21481513	21481513	G	C	SNP	IFNE	NM_176891	human	genbank	57_37b	-1	validated	missense	c.181	p.L61V	0.004	HMMPfam_Interferon,superfamily_4_helix_cytokine,HMMSmart_IFabd	HMMPfam_Interferon,superfamily_4_helix_cytokine,HMMSmart_IFabd,PatternScan_INTERFERON_A_B_D	-	no_errors	
IGFL4	444882	genome.wustl.edu	37	19	46543640	46543647	+	Frame_Shift_Del	DEL	CCTGGGCG	CCTGGGCG	-	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	CCTGGGCG	CCTGGGCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46543640	46543647	CCTGGGCG	-	DEL	IGFL4	NM_001002923	human	genbank	57_37b	-1	provisional	frame_shift_del	c.105_98	p.A33fs	0.001:0.004:0.003:0.001:0.002:0.002:0.000:0.000	NULL	NULL	(deletion:cds_exon[46543415,46543674])	no_errors	
INTS3	65123	genome.wustl.edu	37	1	153734075	153734075	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	153734075	153734075	A	T	SNP	INTS3	NM_023015	human	genbank	57_37b	+1	validated	missense	c.1439	p.K480M	1.000	HMMPfam_DUF2356	HMMPfam_DUF2356	-	no_errors	
KIAA1383	54627	genome.wustl.edu	37	1	232942237	232942237	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	232942237	232942237	C	G	SNP	KIAA1383	NM_019090	human	genbank	57_37b	+1	validated	missense	c.1468	p.H490D	0.000	NULL	NULL	-	no_errors	
KLHDC3	116138	genome.wustl.edu	37	6	42986630	42986630	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42986630	42986630	A	C	SNP	KLHDC3	NM_057161	human	genbank	57_37b	+1	reviewed	missense	c.850	p.K284Q	1.000	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2,HMMPfam_Kelch_1	-	no_errors	
KRT19	3880	genome.wustl.edu	37	17	39680125	39680125	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39680125	39680125	C	T	SNP	KRT19	NM_002276	human	genbank	57_37b	-1	reviewed	missense	c.1073	p.R358Q	1.000	HMMPfam_Filament	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors	
KRT4	3851	genome.wustl.edu	37	12	53208015	53208015	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53208015	53208015	T	C	SNP	KRT4	NM_002272	human	genbank	57_37b	-1	reviewed	missense	c.50	p.D17G	0.996	NULL	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors	
LAMA2	3908	genome.wustl.edu	37	6	129824389	129824389	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	129824389	129824389	G	C	SNP	LAMA2	NM_000426	human	genbank	57_37b	+1	reviewed	missense	c.8511	p.M2837I	1.000	superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_1	HMMSmart_LamNT,HMMPfam_Laminin_N,superfamily_Gal_bind_like,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_LAM_1,superfamily_SSF57196,PatternScan_EGF_2,HMMSmart_LamB,HMMPfam_Laminin_B,HMMPfam_Laminin_I,superfamily_SSF56399,HMMPfam_Laminin_II,HMMSmart_LamG,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2	-	no_errors	
LOC100132672	0	genome.wustl.edu	37	9	69501969	69501969	+	RNA	SNP	C	C	A	rs7040086	byCluster;by2Hit2Allele;byHapMap	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	69501969	69501969	C	A	SNP	LOC100132672	XR_038504	human	genbank	57_37b	+1	model	rna	NULL	NULL	1.000	-	-	-		
LOC100132686	0	genome.wustl.edu	37	11	112131451	112131451	+	RNA	SNP	C	C	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	112131451	112131451	C	T	SNP	LOC100132686	XR_078450	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.338	-	-	-	no_errors	
LOC645225	645225	genome.wustl.edu	37	9	79655569	79655569	+	Missense_Mutation	SNP	C	T	T	rs10869869	byCluster;byFrequency;by1000genomes	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	79655569	79655569	C	T	SNP	LOC645225	XM_928264	human	genbank	57_37b	+1	model	missense	c.238	p.R80W	0.001	HMMPfam_WRW	HMMPfam_WRW	-		
LOC653075	653075	genome.wustl.edu	37	15	30435851	30435851	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	30435851	30435851	G	A	SNP	LOC653075	XR_078494	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.955	-	-	-	no_errors	
LRP1B	53353	genome.wustl.edu	37	2	141528484	141528484	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	141528484	141528484	T	C	SNP	LRP1B	NM_018557	human	genbank	57_37b	-1	validated	silent	c.5592	p.G1864	0.987	superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_2	superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_SSF57196,HMMSmart_EGF,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b,HMMPfam_EGF,HMMPfam_NHL,HMMPfam_EGF_2,PatternScan_EGF_1	-	no_errors	
LRRC4B	94030	genome.wustl.edu	37	19	51021546	51021546	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51021546	51021546	C	A	SNP	LRRC4B	NM_001080457	human	genbank	57_37b	-1	provisional	missense	c.1424	p.G475V	0.001	NULL	superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	-	no_errors	
LTBP4	8425	genome.wustl.edu	37	19	41133242	41133242	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41133242	41133242	G	T	SNP	LTBP4	ENST00000308370	human	ensembl	57_37b	+1	known	nonsense	c.4546	p.E1516*	0.043	NULL	superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,superfamily_Fibril-assoc,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,superfamily_Grow_fac_recept	-	no_errors	
MED16	10025	genome.wustl.edu	37	19	884973	884973	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	884973	884973	G	C	SNP	MED16	NM_005481	human	genbank	57_37b	-1	validated	missense	c.915	p.I305M	0.384	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
MGC26647	219557	genome.wustl.edu	37	7	88424032	88424032	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	88424032	88424032	T	A	SNP	MGC26647	NM_152706	human	genbank	57_37b	-1	predicted	silent	c.225	p.S75	0.000	NULL	NULL	-	no_errors	
MPHOSPH9	10198	genome.wustl.edu	37	12	123703035	123703035	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	123703035	123703035	G	A	SNP	MPHOSPH9	NM_022782	human	genbank	57_37b	-1	validated	missense	c.428	p.T143I	1.000	NULL	NULL	-	no_errors	
MRPL48	51642	genome.wustl.edu	37	11	73574260	73574260	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	73574260	73574260	T	A	SNP	MRPL48	NM_016055	human	genbank	57_37b	+1	reviewed	missense	c.518	p.I173K	1.000	superfamily_Ribosomal protein S10,HMMPfam_Ribosomal_S10	superfamily_Ribosomal protein S10,HMMPfam_Ribosomal_S10	-	no_errors	
MYO10	4651	genome.wustl.edu	37	5	16818206	16818206	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	16818206	16818206	C	T	SNP	MYO10	NM_012334	human	genbank	57_37b	-1	validated	missense	c.191	p.G64D	0.999	superfamily_SSF52540,HMMSmart_MYSc	PatternScan_FERM_1,PatternScan_FERM_2,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_MyTH4,HMMPfam_MyTH4,HMMSmart_B41,HMMPfam_RA,superfamily_FERM_3-hlx,HMMPfam_FERM_M	-	no_errors	
NAP1L1	4673	genome.wustl.edu	37	12	76453633	76453633	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	76453633	76453633	T	A	SNP	NAP1L1	NM_004537	human	genbank	57_37b	-1	reviewed	missense	c.374	p.Y125F	1.000	HMMPfam_NAP	HMMPfam_NAP	-	no_errors	
NGLY1	55768	genome.wustl.edu	37	3	25761640	25761640	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	25761640	25761640	A	G	SNP	NGLY1	NM_018297	human	genbank	57_37b	-1	reviewed	missense	c.1654	p.S552P	1.000	HMMSmart_SM00613,HMMPfam_DUF750	HMMPfam_PUB,HMMSmart_SM00580,HMMPfam_Transglut_core,superfamily_Cysteine proteinases,HMMSmart_SM00460,HMMSmart_SM00613,HMMPfam_DUF750	-	no_errors	
NID1	4811	genome.wustl.edu	37	1	236205393	236205393	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	236205393	236205393	G	C	SNP	NID1	NM_002508	human	genbank	57_37b	-1	reviewed	missense	c.952	p.L318V	0.000	NULL	HMMSmart_SM00539,HMMPfam_NIDO,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMSmart_SM00682,HMMPfam_G2F,superfamily_GFP-like,PatternScan_EGF_CA,HMMPfam_EGF_CA,superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,PatternScan_EGF_1	-	no_errors	
NR1D2	9975	genome.wustl.edu	37	3	24018854	24018854	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	24018854	24018854	C	T	SNP	NR1D2	NM_005126	human	genbank	57_37b	+1	reviewed	nonsense	c.1684	p.R562*	1.000	superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors	
NR4A3	8013	genome.wustl.edu	37	9	102590381	102590381	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	102590381	102590381	G	A	SNP	NR4A3	NM_173200	human	genbank	57_37b	+1	reviewed	silent	c.90	p.A30	0.419	NULL	HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors	
NRK	203447	genome.wustl.edu	37	X	105149332	105149332	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	105149332	105149332	G	A	SNP	NRK	NM_198465	human	genbank	57_37b	+1	validated	missense	c.841	p.G281R	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_p53-like transcription factors,HMMSmart_SM00036,HMMPfam_CNH	-	no_errors	
NSUN4	387338	genome.wustl.edu	37	1	46818635	46818635	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	46818635	46818635	C	G	SNP	NSUN4	NM_199044	human	genbank	57_37b	+1	validated	missense	c.688	p.Q230E	0.002	HMMPfam_Nol1_Nop2_Fmu,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_Nol1_Nop2_Fmu,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors	
NXF3	56000	genome.wustl.edu	37	X	102332671	102332671	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	102332671	102332671	C	T	SNP	NXF3	ENST00000372709	human	ensembl	57_37b	-1	known	missense	c.1132	p.V378M	0.200	NULL	HMMPfam_Tap-RNA_bind,superfamily_RNA-binding domain RBD,superfamily_NTF2-like,HMMPfam_NTF2	-	no_errors	
OBSCN	84033	genome.wustl.edu	37	1	228467646	228467646	+	Silent	SNP	C	C	G	rs379991	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228467646	228467646	C	G	SNP	OBSCN	NM_001098623	human	genbank	57_37b	+1	reviewed	silent	c.7521	p.P2507	0.004	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-		
OR10H4	126541	genome.wustl.edu	37	19	16060433	16060433	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	16060433	16060433	G	A	SNP	OR10H4	NM_001004465	human	genbank	57_37b	+1	validated	missense	c.616	p.V206I	0.002	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
OR51B4	79339	genome.wustl.edu	37	11	5322935	5322935	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	5322935	5322935	C	A	SNP	OR51B4	NM_033179	human	genbank	57_37b	-1	validated	missense	c.242	p.G81V	0.008	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors	
OR52A5	390054	genome.wustl.edu	37	11	5153708	5153708	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	5153708	5153708	G	C	SNP	OR52A5	NM_001005160	human	genbank	57_37b	-1	validated	missense	c.165	p.N55K	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR5AZ1P	0	genome.wustl.edu	37	11	57684949	57684949	+	Missense_Mutation	SNP	C	A	A	rs615133	byCluster;byFrequency;bySubmitter;by1000genomes	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	57684949	57684949	C	A	SNP	OR5AZ1P	ENST00000319748	human	ensembl	57_37b	-1	known	missense	c.674	p.S225I	0.025	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-		
PHF3	23469	genome.wustl.edu	37	6	64416113	64416113	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	64416113	64416113	C	T	SNP	PHF3	NM_015153	human	genbank	57_37b	+1	provisional	missense	c.3562	p.R1188C	0.957	NULL	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Elongation factor TFIIS domain 2,HMMPfam_TFIIS_M,HMMSmart_SM00510,HMMPfam_SPOC	-	no_errors	
PI16	221476	genome.wustl.edu	37	6	36931628	36931628	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	36931628	36931628	G	C	SNP	PI16	NM_153370	human	genbank	57_37b	+1	validated	missense	c.1300	p.V434L	0.000	NULL	superfamily_PR-1-like,HMMSmart_SM00198,HMMPfam_SCP,PatternScan_CRISP_1,PatternScan_CRISP_2,PatternScan_PEROXIDASE_1	-	no_errors	
PIK3C2B	5287	genome.wustl.edu	37	1	204403609	204403609	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	204403609	204403609	C	T	SNP	PIK3C2B	NM_002646	human	genbank	57_37b	-1	reviewed	missense	c.3644	p.G1215D	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146	superfamily_Ubiquitin-like,HMMPfam_PI3K_rbd,HMMSmart_SM00144,HMMSmart_SM00142,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PI3K_C2,superfamily_ARM repeat,HMMSmart_SM00145,HMMPfam_PI3Ka,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMSmart_SM00239,HMMPfam_C2	-	no_errors	
PLCB4	5332	genome.wustl.edu	37	20	9319564	9319569	+	In_Frame_Del	DEL	TGAAGC	TGAAGC	-	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	TGAAGC	TGAAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	9319564	9319569	TGAAGC	-	DEL	PLCB4	NM_000933	human	genbank	57_37b	+1	reviewed	in_frame_del	c.249_254	p.EA84in_frame_del	0.981:1.000:1.000:1.000:1.000:1.000	superfamily_SSF50729	superfamily_SSF50729,superfamily_SSF47473,HMMPfam_efhand_like,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMPfam_DUF1154	(deletion:cds_exon[9319541,9319684])	no_errors	
PLK4	10733	genome.wustl.edu	37	4	128804612	128804612	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	128804612	128804612	G	C	SNP	PLK4	NM_014264	human	genbank	57_37b	+1	reviewed	missense	c.241	p.D81H	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_Sak_Polo,superfamily_SSF82615	-	no_errors	
PRKCB	5579	genome.wustl.edu	37	16	24183606	24183606	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	24183606	24183606	G	T	SNP	PRKCB	NM_002738	human	genbank	57_37b	+1	reviewed	missense	c.1255	p.V419L	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-	no_errors	
PTPN18	26469	genome.wustl.edu	37	2	131128528	131128530	+	In_Frame_Del	DEL	CAT	CAT	-	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	CAT	CAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	131128528	131128530	CAT	-	DEL	PTPN18	NM_014369	human	genbank	57_37b	+1	reviewed	in_frame_del	c.915_917	p.I306in_frame_del	0.996:0.995:1.000	NULL	HMMSmart_PTPc,superfamily_SSF52799,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1	(deletion:cds_exon[131128448,131128537])	no_errors	
PVRL2	5819	genome.wustl.edu	37	19	45368575	45368575	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	45368575	45368575	C	G	SNP	PVRL2	NM_001042724	human	genbank	57_37b	+1	reviewed	missense	c.136	p.L46V	0.353	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406,HMMPfam_C2-set_2,HMMPfam_ig	-	no_errors	
RANBP17	64901	genome.wustl.edu	37	5	170597134	170597134	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	170597134	170597134	G	T	SNP	RANBP17	NM_022897	human	genbank	57_37b	+1	provisional	missense	c.1711	p.V571L	1.000	NULL	superfamily_ARM repeat,HMMPfam_IBN_N	-	no_errors	
RASSF5	83593	genome.wustl.edu	37	1	206760274	206760274	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	206760274	206760274	G	C	SNP	RASSF5	NM_182663	human	genbank	57_37b	+1	reviewed	missense	c.1221	p.E407D	0.990	NULL	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMSmart_SM00314,HMMPfam_RA	-	no_errors	
RHOB	388	genome.wustl.edu	37	2	20647263	20647263	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	20647263	20647263	G	T	SNP	RHOB	NM_004040	human	genbank	57_37b	+1	validated	missense	c.37	p.D13Y	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00173,HMMSmart_SM00175,HMMSmart_SM00174	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00173,HMMSmart_SM00175,HMMSmart_SM00174	-	no_errors	
RIMS1	22999	genome.wustl.edu	37	6	72960981	72960981	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	72960981	72960981	C	T	SNP	RIMS1	NM_014989	human	genbank	57_37b	+1	reviewed	missense	c.2608	p.H870Y	1.000	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	superfamily_FYVE/PHD zinc finger,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors	
SCARB1	949	genome.wustl.edu	37	12	125296490	125296490	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	125296490	125296490	G	A	SNP	SCARB1	NM_005505	human	genbank	57_37b	-1	validated	missense	c.652	p.L218F	0.134	HMMPfam_CD36	HMMPfam_CD36	-	no_errors	
SCARB2	950	genome.wustl.edu	37	4	77100835	77100835	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	77100835	77100835	C	T	SNP	SCARB2	NM_005506	human	genbank	57_37b	-1	reviewed	silent	c.447	p.V149	0.000	HMMPfam_CD36	HMMPfam_CD36	-	no_errors	
SCLT1	132320	genome.wustl.edu	37	4	129873937	129873937	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	129873937	129873937	G	A	SNP	SCLT1	NM_144643	human	genbank	57_37b	-1	validated	missense	c.1205	p.S402L	1.000	NULL	NULL	-	no_errors	
SCN8A	6334	genome.wustl.edu	37	12	52182482	52182482	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52182482	52182482	A	C	SNP	SCN8A	NM_014191	human	genbank	57_37b	+1	validated	missense	c.4231	p.T1411P	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,PatternScan_ODR_DC_2_1,HMMSmart_SM00015,HMMPfam_IQ	-	no_errors	
SEZ6L	23544	genome.wustl.edu	37	22	26689012	26689012	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	26689012	26689012	A	T	SNP	SEZ6L	NM_021115	human	genbank	57_37b	+1	validated	missense	c.735	p.K245N	0.045	NULL	superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB	-	no_errors	
SIRPB1	10326	genome.wustl.edu	37	20	1600536	1600536	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	1600536	1600536	G	C	SNP	SIRPB1	NM_001135844	human	genbank	57_37b	-1	reviewed	missense	c.55	p.L19V	0.008	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406,HMMPfam_C1-set,HMMSmart_SM00407	-	no_errors	
SLC12A5	57468	genome.wustl.edu	37	20	44669237	44669237	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	44669237	44669237	G	T	SNP	SLC12A5	NM_001134771	human	genbank	57_37b	+1	reviewed	missense	c.907	p.D303Y	1.000	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors	
SLC45A4	57210	genome.wustl.edu	37	8	142222615	142222615	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	142222615	142222615	C	G	SNP	SLC45A4	NM_001080431	human	genbank	57_37b	-1	provisional	missense	c.1829	p.G610A	1.000	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors	
SNN	8303	genome.wustl.edu	37	16	11770041	11770041	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	11770041	11770041	C	G	SNP	SNN	NM_003498	human	genbank	57_37b	+1	validated	missense	c.126	p.S42R	1.000	HMMPfam_SNN_linker	HMMPfam_SNN_transmemb,HMMPfam_SNN_linker,HMMPfam_SNN_cytoplasm	-	no_errors	
SNX13	23161	genome.wustl.edu	37	7	17915306	17915306	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	17915306	17915306	T	A	SNP	SNX13	NM_015132	human	genbank	57_37b	-1	reviewed	missense	c.548	p.D183V	1.000	HMMPfam_PXA,HMMSmart_SM00313	HMMPfam_PXA,HMMSmart_SM00313,superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315,superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMPfam_Nexin_C	-	no_errors	
STX10	8677	genome.wustl.edu	37	19	13260582	13260582	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	13260582	13260582	G	T	SNP	STX10	NM_003765	human	genbank	57_37b	-1	provisional	silent	c.165	p.R55	0.967	superfamily_t-snare proteins,HMMPfam_Syntaxin-6_N	superfamily_t-snare proteins,HMMPfam_Syntaxin-6_N,HMMSmart_SM00397,HMMPfam_SNARE,PatternScan_SYNTAXIN	-	no_errors	
SYNJ1	8867	genome.wustl.edu	37	21	34099183	34099183	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	34099183	34099183	C	T	SNP	SYNJ1	NM_003895	human	genbank	57_37b	-1	validated	silent	c.24	p.R8	0.989	NULL	HMMPfam_Syja_N,superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos,HMMPfam_DUF1866,superfamily_RNA-binding domain RBD	-	no_errors	
TAGLN2	8407	genome.wustl.edu	37	1	159889125	159889125	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	159889125	159889125	C	G	SNP	TAGLN2	NM_003564	human	genbank	57_37b	-1	reviewed	missense	c.397	p.G133R	1.000	superfamily_Calponin-homology,HMMPfam_CH	superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH,PatternScan_CALPONIN_1,HMMPfam_Calponin	-	no_errors	
TDRD5	163589	genome.wustl.edu	37	1	179632507	179632507	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	179632507	179632507	G	A	SNP	TDRD5	NM_173533	human	genbank	57_37b	+1	provisional	missense	c.2368	p.D790N	0.032	NULL	HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333	-	no_errors	
TET3	200424	genome.wustl.edu	37	2	74274174	74274174	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	74274174	74274174	C	A	SNP	TET3	NM_144993	human	genbank	57_37b	+1	provisional	missense	c.725	p.T242N	0.957	NULL	NULL	-	no_errors	
TNRC18	27320	genome.wustl.edu	37	7	5352742	5352742	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	5352742	5352742	C	A	SNP	TNRC18	NM_001080495	human	genbank	57_37b	-1	provisional	missense	c.7780	p.G2594C	0.540	NULL	HMMPfam_BAH,HMMSmart_SM00439	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578218	7578218	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578218	7578218	T	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.631	p.T211fs	0.993	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7578177,7578289])	no_errors	
TTN	7273	genome.wustl.edu	37	2	179442477	179442477	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179442477	179442477	G	C	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.60966	p.N20322K	1.000	HMMPfam_fn3,HMMSmart_SM00060	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
TUBA1B	10376	genome.wustl.edu	37	12	49523054	49523054	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	49523054	49523054	C	G	SNP	TUBA1B	NM_006082	human	genbank	57_37b	-1	validated	missense	c.346	p.D116H	1.000	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors	
TULP4	56995	genome.wustl.edu	37	6	158924964	158924964	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	158924964	158924964	C	A	SNP	TULP4	NM_020245	human	genbank	57_37b	+1	validated	missense	c.4269	p.S1423R	1.000	NULL	HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,superfamily_TNF-like,HMMPfam_SOCS_box,superfamily_Transcriptional factor tubby C-terminal domain,HMMPfam_Tub	-	no_errors	
UNC13A	23025	genome.wustl.edu	37	19	17768991	17768991	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17768991	17768991	G	A	SNP	UNC13A	NM_001080421	human	genbank	57_37b	-1	validated	missense	c.911	p.T304M	1.000	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD	-	no_errors	
USF1	7391	genome.wustl.edu	37	1	161011904	161011904	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	161011904	161011904	A	C	SNP	USF1	NM_007122	human	genbank	57_37b	-1	reviewed	splice_site	c.276+2	e4+2	0.822	-	-	-	no_errors	
USH2A	7399	genome.wustl.edu	37	1	216062079	216062079	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	216062079	216062079	T	G	SNP	USH2A	NM_206933	human	genbank	57_37b	-1	reviewed	missense	c.7912	p.T2638P	0.997	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors	
WDR48	57599	genome.wustl.edu	37	3	39118666	39118666	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	39118666	39118666	A	G	SNP	WDR48	NM_020839	human	genbank	57_37b	+1	provisional	missense	c.934	p.I312V	0.478	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
WIPF2	147179	genome.wustl.edu	37	17	38412741	38412741	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	38412741	38412741	A	T	SNP	WIPF2	NM_133264	human	genbank	57_37b	+1	validated	silent	c.30	p.P10	0.038	NULL	HMMPfam_WH2,HMMSmart_SM00246	-	no_errors	
WWC3	55841	genome.wustl.edu	37	X	10096136	10096154	+	Frame_Shift_Del	DEL	GCTGGGTGTGCAGGAGAGA	GCTGGGTGTGCAGGAGAGA	-	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	GCTGGGTGTGCAGGAGAGA	GCTGGGTGTGCAGGAGAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	10096136	10096154	GCTGGGTGTGCAGGAGAGA	-	DEL	WWC3	NM_015691	human	genbank	57_37b	+1	validated	frame_shift_del	c.2215_2233	p.G740fs	0.000:0.000:0.000:0.002:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.000	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	(deletion:cds_exon[10096028,10096201])	no_errors	
ZNF687	57592	genome.wustl.edu	37	1	151259889	151259889	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AO-A0J6-01A-11W-A050-09	TCGA-AO-A0J6-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	151259889	151259889	C	G	SNP	ZNF687	NM_020832	human	genbank	57_37b	+1	provisional	silent	c.1122	p.S374	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors	
