Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ALOX5	240	genome.wustl.edu	37	10	45878089	45878089	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	45878089	45878089	G	A	SNP	ALOX5	NM_000698	human	genbank	57_37b	+1	reviewed	nonsense	c.309	p.W103*	1.000	superfamily_Lipase_LipOase,HMMPfam_PLAT,HMMSmart_LH2	superfamily_Lipase_LipOase,HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipoxygenase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_1,PatternScan_LIPOXYGENASE_2	-	no_errors	
C9orf144B	0	genome.wustl.edu	37	9	34723329	34723329	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	34723329	34723329	G	A	SNP	C9orf144B	NM_001141917	human	genbank	57_37b	-1	validated	missense	c.3908	p.S1303F	0.029	NULL	NULL	-	no_errors	
CASKIN2	57513	genome.wustl.edu	37	17	73498623	73498623	+	Silent	SNP	A	A	G	rs7502835	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	73498623	73498623	A	G	SNP	CASKIN2	NM_020753	human	genbank	57_37b	-1	validated	silent	c.2532	p.S844	0.002	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_1	-		
CDC2L2	985	genome.wustl.edu	37	1	1582961	1582961	+	Missense_Mutation	SNP	G	C	C	rs61774949	byCluster	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1582961	1582961	G	C	SNP	CDC2L2	ENST00000340677	human	ensembl	57_37b	-1	known	missense	c.281	p.P94R	0.009	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-		
ENSG00000128623	0	genome.wustl.edu	37	19	39435933	39435933	+	Silent	SNP	C	C	G	rs11672849	byCluster;byHapMap;by1000genomes	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	39435933	39435933	C	G	SNP	ENSG00000128623	ENST00000249399	human	ensembl	57_37b	-1	known	silent	c.711	p.P237	0.000	NULL	NULL	-		
ENSG00000205976	0	genome.wustl.edu	37	5	7300495	7300495	+	Missense_Mutation	SNP	G	G	A	rs62639509	byCluster	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	7300495	7300495	G	A	SNP	ENSG00000205976	ENST00000382550	human	ensembl	57_37b	-1	known	missense	c.232	p.R78W	0.028	NULL	NULL	-		
ENSG00000231452	0	genome.wustl.edu	37	18	12068078	12068078	+	Nonsense_Mutation	SNP	G	T	T	rs34203217	byCluster;byFrequency;by1000genomes	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	12068078	12068078	G	T	SNP	ENSG00000231452	ENST00000455542	human	ensembl	57_37b	-1	known	nonsense	c.183	p.C61*	1.000	HMMPfam_SSDP	HMMPfam_SSDP	-		
ENSG00000246538	0	genome.wustl.edu	37	X	135956107	135956107	+	RNA	SNP	G	G	A	rs4020659	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	135956107	135956107	G	A	SNP	ENSG00000246538	ENST00000501979	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.702	-	-	-		
F12	2161	genome.wustl.edu	37	5	176831826	176831826	+	Missense_Mutation	SNP	C	C	G	rs17876030	byCluster;byFrequency;by1000genomes	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	176831826	176831826	C	G	SNP	F12	NM_000505	human	genbank	57_37b	-1	reviewed	missense	c.619	p.A207P	0.000	HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,superfamily_Kringle-like,PatternScan_EGF_1,PatternScan_EGF_2	superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,HMMPfam_fn1,PatternScan_FN1_1,HMMSmart_SM00058,PatternScan_EGF_2,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-		
G6PC2	57818	genome.wustl.edu	37	2	169757925	169757925	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	169757925	169757925	T	A	SNP	G6PC2	NM_021176	human	genbank	57_37b	+1	reviewed	missense	c.84	p.F28L	1.000	superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase	superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase,HMMSmart_SM00014,HMMPfam_PAP2	-	no_errors	
INTS10	55174	genome.wustl.edu	37	8	19679949	19679949	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	19679949	19679949	G	A	SNP	INTS10	NM_018142	human	genbank	57_37b	+1	validated	splice_site	c.442-1	e5-1	1.000	-	-	-	no_errors	
KCNH7	90134	genome.wustl.edu	37	2	163302895	163302895	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	163302895	163302895	T	C	SNP	KCNH7	NM_033272	human	genbank	57_37b	-1	reviewed	missense	c.1187	p.N396S	1.000	NULL	superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	-	no_errors	
LOC100287294	0	genome.wustl.edu	37	7	57011894	57011894	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	57011894	57011894	G	T	SNP	LOC100287294	XM_002342726	human	genbank	57_37b	-1	model	missense	c.167	p.T56N	0.121	NULL	NULL	-	no_errors	
LOC729992	729992	genome.wustl.edu	37	2	12164246	12164246	+	RNA	SNP	C	C	T	rs4669797	byCluster;byFrequency;by1000genomes	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	12164246	12164246	C	T	SNP	LOC729992	XR_038318	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.997	-	-	-		
NCSTN	23385	genome.wustl.edu	37	1	160323977	160323977	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160323977	160323977	A	G	SNP	NCSTN	NM_015331	human	genbank	57_37b	+1	reviewed	missense	c.1249	p.N417D	0.000	superfamily_Zn-dependent exopeptidases,HMMPfam_Nicastrin	superfamily_Zn-dependent exopeptidases,HMMPfam_Nicastrin,PatternScan_WD_REPEATS_1	-	no_errors	
PGBD2	267002	genome.wustl.edu	37	1	249210906	249210906	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	249210906	249210906	G	A	SNP	PGBD2	NM_170725	human	genbank	57_37b	+1	validated	silent	c.123	p.E41	0.748	NULL	NULL	-	no_errors	
PGR	5241	genome.wustl.edu	37	11	100996740	100996741	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	100996740	100996741	-	C	INS	PGR	NM_000926	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.1787_1786	p.E596fs	1.000:1.000	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_Prog_receptor,HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936094	178936094	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936094	178936094	C	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1636	p.Q546K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PLXNA1	5361	genome.wustl.edu	37	3	126752825	126752825	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	126752825	126752825	G	A	SNP	PLXNA1	NM_032242	human	genbank	57_37b	+1	validated	missense	c.5587	p.E1863K	1.000	NULL	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP	-	no_errors	
PRSS42	0	genome.wustl.edu	37	3	46873464	46873464	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	46873464	46873464	A	G	SNP	PRSS42	NM_182702	human	genbank	57_37b	-1	provisional	missense	c.694	p.C232R	0.599	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	PatternScan_TRYPSIN_SER,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS	-	no_errors	
S1PR3	1903	genome.wustl.edu	37	9	91616760	91616760	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	91616760	91616760	C	T	SNP	S1PR3	NM_005226	human	genbank	57_37b	+1	reviewed	silent	c.645	p.Y215	0.961	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
SH3BP4	23677	genome.wustl.edu	37	2	235950945	235950945	+	Missense_Mutation	SNP	G	G	A	rs35521640	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	235950945	235950945	G	A	SNP	SH3BP4	NM_014521	human	genbank	57_37b	+1	reviewed	missense	c.1532	p.R511H	0.998	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2	-		
STOX1	219736	genome.wustl.edu	37	10	70644128	70644128	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	70644128	70644128	C	T	SNP	STOX1	NM_001130161	human	genbank	57_37b	+1	reviewed	silent	c.576	p.Y192	1.000	NULL	HMMPfam_Stork_head	-	no_errors	
TRMT2B	79979	genome.wustl.edu	37	X	100275554	100275554	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	100275554	100275554	G	A	SNP	TRMT2B	NM_024917	human	genbank	57_37b	-1	reviewed	nonsense	c.1090	p.Q364*	0.184	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_MTS	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_MTS	-	no_errors	
VSIG8	391123	genome.wustl.edu	37	1	159828534	159828534	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J7-01A-11W-A050-09	TCGA-AO-A0J7-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	159828534	159828534	C	T	SNP	VSIG8	NM_001013661	human	genbank	57_37b	-1	provisional	missense	c.218	p.R73Q	0.053	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_V-set,HMMSmart_SM00406	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_V-set,HMMSmart_SM00406,HMMSmart_SM00408	-	no_errors	
