Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AEBP1	165	genome.wustl.edu	37	7	44150599	44150599	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	44150599	44150599	C	A	SNP	AEBP1	NM_001129	human	genbank	57_37b	+1	reviewed	missense	c.1573	p.L525I	0.997	superfamily_Galactose-binding domain-like,HMMSmart_SM00231,HMMPfam_F5_F8_type_C,PatternScan_FA58C_2	superfamily_Galactose-binding domain-like,HMMSmart_SM00231,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,superfamily_Carboxypeptidase regulatory domain	-	no_errors	
ANKRD20A2	441430	genome.wustl.edu	37	9	42410305	42410306	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	42410305	42410306	AA	-	DEL	ANKRD20A2	NM_001012421	human	genbank	57_37b	+1	validated	frame_shift_del	c.2294_2295	p.G767fs	0.440:0.416	NULL	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK	(deletion:cds_exon[42409509,42410483])	no_errors	
ANKS4B	257629	genome.wustl.edu	37	16	21261170	21261199	+	In_Frame_Del	DEL	GATAATGACTTACAGACTCCACTGGATGCT	GATAATGACTTACAGACTCCACTGGATGCT	-	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	GATAATGACTTACAGACTCCACTGGATGCT	GATAATGACTTACAGACTCCACTGGATGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	21261170	21261199	GATAATGACTTACAGACTCCACTGGATGCT	-	DEL	ANKS4B	NM_145865	human	genbank	57_37b	+1	validated	in_frame_del	c.283_312	p.DNDLQTPLDA95in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:0.685:0.723:0.848:0.856:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.013:0.882:1.000:1.000:1.000:1.000:1.000:1.000:0.997:0.708	superfamily_Ankyrin repeat,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	(deletion:cds_exon[21261052,21262141])	no_errors	
ATAD2	29028	genome.wustl.edu	37	8	124351573	124351573	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	124351573	124351573	A	C	SNP	ATAD2	NM_014109	human	genbank	57_37b	-1	reviewed	silent	c.2832	p.P944	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_YL1,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain	-	no_errors	
AURKAPS1	6791	genome.wustl.edu	37	1	220440533	220440533	+	RNA	SNP	C	C	T	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	220440533	220440533	C	T	SNP	AURKAPS1	ENST00000499893	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.970	-	-	-	no_errors	
B3GNT9	84752	genome.wustl.edu	37	16	67183643	67183643	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67183643	67183643	G	A	SNP	B3GNT9	NM_033309	human	genbank	57_37b	-1	validated	missense	c.746	p.A249V	0.000	HMMPfam_Galactosyl_T	HMMPfam_Galactosyl_T	-	no_errors	
BAT2L1	0	genome.wustl.edu	37	9	134343003	134343003	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	134343003	134343003	C	T	SNP	BAT2L1	NM_013318	human	genbank	57_37b	+1	validated	missense	c.1774	p.P592S	0.932	NULL	HMMPfam_BAT2_N	-	no_errors	
BTN3A3	10384	genome.wustl.edu	37	6	26443819	26443819	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26443819	26443819	C	A	SNP	BTN3A3	NM_006994	human	genbank	57_37b	+1	validated	missense	c.17	p.S6Y	0.002	NULL	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors	
C1orf150	148823	genome.wustl.edu	37	1	247712349	247712349	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247712349	247712349	C	A	SNP	C1orf150	ENST00000366490	human	ensembl	57_37b	+1	known	missense	c.218	p.P73H	0.001	NULL	NULL	-	no_errors	
C2orf16	84226	genome.wustl.edu	37	2	27803116	27803116	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	27803116	27803116	C	A	SNP	C2orf16	NM_032266	human	genbank	57_37b	+1	validated	missense	c.3677	p.A1226D	0.156	NULL	NULL	-	no_errors	
C6orf70	55780	genome.wustl.edu	37	6	170155510	170155510	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	170155510	170155510	T	G	SNP	C6orf70	NM_018341	human	genbank	57_37b	+1	validated	missense	c.307	p.F103V	0.003	NULL	NULL	-	no_errors	
CACNA2D3	55799	genome.wustl.edu	37	3	54354510	54354510	+	Silent	SNP	T	T	C	rs9879885	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	54354510	54354510	T	C	SNP	CACNA2D3	NM_018398	human	genbank	57_37b	+1	reviewed	silent	c.246	p.I82	0.029	NULL	HMMPfam_VWA_N,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Cache_1	-		
CCDC132	55610	genome.wustl.edu	37	7	92952973	92952976	+	Frame_Shift_Del	DEL	ATTC	ATTC	-	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	ATTC	ATTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	92952973	92952976	ATTC	-	DEL	CCDC132	NM_017667	human	genbank	57_37b	+1	validated	frame_shift_del	c.1906_1909	p.H637fs	1.000:1.000:1.000:1.000	NULL	HMMPfam_DUF2450,HMMPfam_DUF2451	(deletion:cds_exon[92952923,92953044])	no_errors	
CDH19	28513	genome.wustl.edu	37	18	64239322	64239322	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	64239322	64239322	T	G	SNP	CDH19	NM_021153	human	genbank	57_37b	-1	reviewed	missense	c.120	p.R40S	0.442	NULL	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors	
CEP68	23177	genome.wustl.edu	37	2	65299282	65299282	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	65299282	65299282	C	T	SNP	CEP68	NM_015147	human	genbank	57_37b	+1	validated	missense	c.1052	p.T351I	0.821	NULL	superfamily_Spectrin repeat	-	no_errors	
COL4A1	1282	genome.wustl.edu	37	13	110859238	110859238	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	110859238	110859238	C	T	SNP	COL4A1	NM_001845	human	genbank	57_37b	-1	reviewed	missense	c.781	p.G261S	1.000	NULL	HMMPfam_Collagen,superfamily_C-type lectin-like,HMMPfam_C4,HMMSmart_SM00111	-	no_errors	
COL4A6	1288	genome.wustl.edu	37	X	107408206	107408206	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	107408206	107408206	C	T	SNP	COL4A6	NM_001847	human	genbank	57_37b	-1	reviewed	missense	c.3874	p.G1292R	1.000	HMMPfam_Collagen	HMMPfam_Collagen,HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like	-	no_errors	
COL6A3	1293	genome.wustl.edu	37	2	238283233	238283233	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	238283233	238283233	G	A	SNP	COL6A3	NM_004369	human	genbank	57_37b	-1	reviewed	silent	c.3501	p.I1167	0.001	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	-	no_errors	
CSMD3	114788	genome.wustl.edu	37	8	113702256	113702256	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	113702256	113702256	C	A	SNP	CSMD3	NM_198123	human	genbank	57_37b	-1	validated	missense	c.1996	p.D666Y	1.000	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10	-	no_errors	
CSPG4	1464	genome.wustl.edu	37	15	75982239	75982239	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	75982239	75982239	G	A	SNP	CSPG4	NM_001897	human	genbank	57_37b	-1	reviewed	silent	c.1167	p.D389	0.113	NULL	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA	-	no_errors	
CUEDC1	404093	genome.wustl.edu	37	17	55962645	55962645	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	55962645	55962645	C	A	SNP	CUEDC1	NM_017949	human	genbank	57_37b	-1	provisional	missense	c.281	p.S94I	0.312	NULL	superfamily_UBA-like,HMMPfam_CUE,HMMSmart_SM00546	-	no_errors	
DBR1	51163	genome.wustl.edu	37	3	137890542	137890542	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	137890542	137890542	C	A	SNP	DBR1	NM_016216	human	genbank	57_37b	-1	validated	silent	c.336	p.V112	0.795	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases,HMMPfam_DBR1	-	no_errors	
DENND1B	163486	genome.wustl.edu	37	1	197481050	197481050	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	197481050	197481050	T	G	SNP	DENND1B	NM_001142795	human	genbank	57_37b	-1	validated	missense	c.1563	p.E521D	0.950	NULL	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801	-	no_errors	
DNAJB8	165721	genome.wustl.edu	37	3	128181749	128181749	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	128181749	128181749	A	C	SNP	DNAJB8	NM_153330	human	genbank	57_37b	-1	validated	missense	c.340	p.F114V	0.899	superfamily_Chaperone J-domain	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,PatternScan_DNAJ_1	-	no_errors	
DNAJC3	5611	genome.wustl.edu	37	13	96395018	96395018	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	96395018	96395018	C	G	SNP	DNAJC3	ENST00000360638	human	ensembl	57_37b	+1	known	missense	c.524	p.P175R	0.111	NULL	superfamily_SSF48452,HMMSmart_TPR,HMMPfam_TPR_1	-	no_errors	
ENSG00000231472	0	genome.wustl.edu	37	10	1382470	1382470	+	Missense_Mutation	SNP	G	G	A	rs2494219	byCluster;byFrequency	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	1382470	1382470	G	A	SNP	ENSG00000231472	ENST00000433742	human	ensembl	57_37b	-1	known	missense	c.47	p.P16L	0.996	NULL	NULL	-		
ENSG00000245527	0	genome.wustl.edu	37	4	120549458	120549459	+	RNA	INS	-	-	CAAGTACATTTTTGTATTTGAAC	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	120549458	120549459	-	CAAGTACATTTTTGTATTTGAAC	INS	ENSG00000245527	ENST00000501370	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.006:0.001	-	-	-	no_errors	
ENSG00000246609	0	genome.wustl.edu	37	14	24035107	24035107	+	RNA	SNP	G	G	T	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24035107	24035107	G	T	SNP	ENSG00000246609	ENST00000502153	human	ensembl	57_37b	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	
EPB41L4B	54566	genome.wustl.edu	37	9	111938882	111938882	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	111938882	111938882	G	A	SNP	EPB41L4B	ENST00000262536	human	ensembl	57_37b	-1	known	splice_site	c.1636-1	e17-1	0.981	-	-	-	no_errors	
FAM22D	728130	genome.wustl.edu	37	10	89117989	89117989	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	89117989	89117989	T	C	SNP	FAM22D	ENST00000330762	human	ensembl	57_37b	+1	known	missense	c.182	p.L61P	0.392	NULL	NULL	-	no_errors	
FRRS1	391059	genome.wustl.edu	37	1	100177695	100177695	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	100177695	100177695	A	G	SNP	FRRS1	NM_001013660	human	genbank	57_37b	-1	validated	silent	c.1446	p.H482	0.835	HMMSmart_B561	HMMPfam_Reeler,HMMPfam_DOMON,HMMSmart_DoH,HMMSmart_B561	-	no_errors	
GCM2	9247	genome.wustl.edu	37	6	10877583	10877583	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	10877583	10877583	A	C	SNP	GCM2	NM_004752	human	genbank	57_37b	-1	reviewed	missense	c.133	p.Y45D	1.000	superfamily_GCM_motif,HMMPfam_GCM	superfamily_GCM_motif,HMMPfam_GCM	-	no_errors	
GLB1L3	112937	genome.wustl.edu	37	11	134151330	134151330	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	134151330	134151330	T	G	SNP	GLB1L3	NM_001080407	human	genbank	57_37b	+1	validated	missense	c.422	p.L141R	1.000	superfamily_(Trans)glycosidases,HMMPfam_Glyco_hydro_35	superfamily_(Trans)glycosidases,HMMPfam_Glyco_hydro_35	-	no_errors	
GPAT2	150763	genome.wustl.edu	37	2	96689096	96689096	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	96689096	96689096	G	A	SNP	GPAT2	NM_207328	human	genbank	57_37b	-1	validated	silent	c.1989	p.D663	1.000	NULL	HMMPfam_Acyltransferase,HMMSmart_SM00563	-	no_errors	
GPR64	10149	genome.wustl.edu	37	X	19031863	19031863	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	19031863	19031863	G	A	SNP	GPR64	NM_001079858	human	genbank	57_37b	-1	validated	missense	c.1040	p.S347F	0.011	NULL	HMMPfam_GPS,HMMSmart_SM00303,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	
GRK4	2868	genome.wustl.edu	37	4	3029685	3029685	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	3029685	3029685	A	G	SNP	GRK4	NM_182982	human	genbank	57_37b	+1	reviewed	silent	c.1017	p.E339	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133	-	no_errors	
HECW1	23072	genome.wustl.edu	37	7	43590049	43590049	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	43590049	43590049	G	A	SNP	HECW1	NM_015052	human	genbank	57_37b	+1	validated	silent	c.4254	p.T1418	0.198	superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors	
HERC4	26091	genome.wustl.edu	37	10	69684843	69684843	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	69684843	69684843	C	A	SNP	HERC4	NM_022079	human	genbank	57_37b	-1	validated	silent	c.2964	p.L988	0.981	superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors	
HOXD3	3232	genome.wustl.edu	37	2	177034213	177034213	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	177034213	177034213	C	G	SNP	HOXD3	NM_006898	human	genbank	57_37b	+1	reviewed	missense	c.371	p.P124R	1.000	NULL	PatternScan_ANTENNAPEDIA,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
HTR1B	3351	genome.wustl.edu	37	6	78172741	78172741	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	78172741	78172741	G	-	DEL	HTR1B	NM_000863	human	genbank	57_37b	-1	provisional	frame_shift_del	c.380	p.S127fs	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	(deletion:cds_exon[78171948,78173120])	no_errors	
KCNIP4	80333	genome.wustl.edu	37	4	20734354	20734354	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	20734354	20734354	G	T	SNP	KCNIP4	NM_147183	human	genbank	57_37b	-1	reviewed	missense	c.529	p.P177T	1.000	superfamily_EF-hand	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors	
KCNK5	8645	genome.wustl.edu	37	6	39162506	39162506	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	39162506	39162506	G	C	SNP	KCNK5	NM_003740	human	genbank	57_37b	-1	reviewed	missense	c.329	p.A110G	0.093	superfamily_SSF81324,HMMPfam_Ion_trans_2	superfamily_SSF81324,HMMPfam_Ion_trans_2	-	no_errors	
LCE1F	353137	genome.wustl.edu	37	1	152749130	152749130	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152749130	152749130	T	C	SNP	LCE1F	NM_178354	human	genbank	57_37b	+1	validated	missense	c.283	p.C95R	0.991	NULL	NULL	-	no_errors	
LIPN	643418	genome.wustl.edu	37	10	90537956	90537956	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	90537956	90537956	G	A	SNP	LIPN	NM_001102469	human	genbank	57_37b	+1	validated	missense	c.1154	p.R385Q	0.002	superfamily_SSF53474,HMMPfam_Abhydrolase_1	HMMPfam_Abhydro_lipase,superfamily_SSF53474,HMMPfam_Abhydrolase_1,PatternScan_LIPASE_SER	-	no_errors	
LOC644256	644256	genome.wustl.edu	37	17	44336847	44336847	+	RNA	SNP	T	T	C	rs117240646	by1000genomes	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	44336847	44336847	T	C	SNP	LOC644256	XR_017527	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.065	-	-	-		
LOXL3	84695	genome.wustl.edu	37	2	74762843	74762843	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	74762843	74762843	C	T	SNP	LOXL3	NM_032603	human	genbank	57_37b	-1	reviewed	missense	c.1288	p.V430I	1.000	superfamily_Srcr_receptor,HMMSmart_SR,HMMPfam_SRCR	superfamily_Srcr_receptor,HMMSmart_SR,HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Lysyl_oxidase,PatternScan_LYSYL_OXIDASE	-	no_errors	
LPHN1	22859	genome.wustl.edu	37	19	14263360	14263360	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	14263360	14263360	A	C	SNP	LPHN1	NM_001008701	human	genbank	57_37b	-1	reviewed	silent	c.3504	p.G1168	0.029	HMMPfam_Latrophilin	HMMPfam_Gal_Lectin,HMMPfam_OLF,HMMSmart_SM00284,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_Latrophilin	-	no_errors	
LPO	4025	genome.wustl.edu	37	17	56342263	56342263	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56342263	56342263	C	G	SNP	LPO	NM_006151	human	genbank	57_37b	+1	reviewed	missense	c.1447	p.Q483E	0.993	superfamily_Peroxidase_super,HMMPfam_An_peroxidase	PatternScan_PEROXIDASE_1,PatternScan_PEROXIDASE_2,superfamily_Peroxidase_super,HMMPfam_An_peroxidase	-	no_errors	
MGA	23269	genome.wustl.edu	37	15	42034982	42034982	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42034982	42034982	T	A	SNP	MGA	NM_001080541	human	genbank	57_37b	+1	validated	missense	c.4971	p.N1657K	1.000	NULL	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_2,HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353	-	no_errors	
MTHFS	10588	genome.wustl.edu	37	15	80181580	80181580	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	80181580	80181580	G	A	SNP	MTHFS	NM_006441	human	genbank	57_37b	-1	validated	silent	c.234	p.C78	0.998	superfamily_SSF100950,HMMPfam_5-FTHF_cyc-lig	superfamily_SSF100950,HMMPfam_5-FTHF_cyc-lig	-	no_errors	
NUP93	9688	genome.wustl.edu	37	16	56782315	56782315	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	56782315	56782315	C	T	SNP	NUP93	NM_014669	human	genbank	57_37b	+1	validated	silent	c.156	p.S52	1.000	NULL	HMMPfam_Nic96	-	no_errors	
OBSCN	84033	genome.wustl.edu	37	1	228492905	228492905	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228492905	228492905	G	C	SNP	OBSCN	ENST00000366707	human	ensembl	57_37b	+1	known	missense	c.4379	p.S1460T	1.000	HMMSmart_SM00406,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,HMMPfam_V-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
PIP4K2C	79837	genome.wustl.edu	37	12	57994199	57994222	+	Frame_Shift_Del	DEL	GAAGCTGAAGAGAGATGTGGAGGT	GAAGCTGAAGAGAGATGTGGAGGT	-	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	GAAGCTGAAGAGAGATGTGGAGGT	GAAGCTGAAGAGAGATGTGGAGGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57994199	57994222	GAAGCTGAAGAGAGATGTGGAGGT	-	DEL	PIP4K2C	NM_024779	human	genbank	57_37b	+1	validated	frame_shift_del	c.792_813	p.E264fs	1.000:1.000:1.000:0.999:0.999:0.996:0.690:0.996:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_SSF56104,HMMSmart_PIPKc,HMMPfam_PIP5K	superfamily_SSF56104,HMMSmart_PIPKc,HMMPfam_PIP5K	(deletion:cds_exon[57994107,57994220], intron[57994221,57994593])	no_errors	
PSG9	5678	genome.wustl.edu	37	19	43762251	43762251	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	43762251	43762251	A	C	SNP	PSG9	ENST00000244293	human	ensembl	57_37b	-1	known	missense	c.1067	p.M356R	0.000	NULL	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2	-	no_errors	
PZP	5858	genome.wustl.edu	37	12	9307212	9307212	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	9307212	9307212	C	A	SNP	PZP	NM_002864	human	genbank	57_37b	-1	validated	missense	c.3774	p.Q1258H	1.000	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp	PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep	-	no_errors	
RAB9B	51209	genome.wustl.edu	37	X	103080633	103080633	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	103080633	103080633	C	T	SNP	RAB9B	NM_016370	human	genbank	57_37b	-1	reviewed	missense	c.82	p.V28I	1.000	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	-	no_errors	
RGAG1	57529	genome.wustl.edu	37	X	109694149	109694149	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	109694149	109694149	C	A	SNP	RGAG1	NM_020769	human	genbank	57_37b	+1	validated	missense	c.304	p.P102T	0.813	NULL	HMMPfam_Retrotrans_gag	-	no_errors	
RIN2	54453	genome.wustl.edu	37	20	19970723	19970723	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	19970723	19970723	G	A	SNP	RIN2	NM_018993	human	genbank	57_37b	+1	reviewed	silent	c.1836	p.K612	0.997	superfamily_VPS9 domain (Pfam 02204)	superfamily_SH2 domain,superfamily_VPS9 domain (Pfam 02204),HMMSmart_SM00167,HMMPfam_VPS9,HMMPfam_RA,HMMSmart_SM00314	-	no_errors	
SCN3A	6328	genome.wustl.edu	37	2	165948952	165948952	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	165948952	165948952	A	C	SNP	SCN3A	NM_006922	human	genbank	57_37b	-1	reviewed	missense	c.4619	p.M1540R	1.000	superfamily_SSF81324	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_IQ,HMMPfam_IQ	-	no_errors	
SEMG1	6406	genome.wustl.edu	37	20	43836891	43836891	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	43836891	43836891	C	A	SNP	SEMG1	NM_003007	human	genbank	57_37b	+1	reviewed	missense	c.953	p.T318N	0.001	HMMPfam_Semenogelin	HMMPfam_Semenogelin	-	no_errors	
SERPINA4	5267	genome.wustl.edu	37	14	95030369	95030369	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	95030369	95030369	G	A	SNP	SERPINA4	NM_006215	human	genbank	57_37b	+1	provisional	missense	c.550	p.D184N	0.006	superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN	superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN	-	no_errors	
SERPINF1	5176	genome.wustl.edu	37	17	1675177	1675177	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	1675177	1675177	A	C	SNP	SERPINF1	NM_002615	human	genbank	57_37b	+1	validated	missense	c.451	p.K151Q	1.000	superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093	superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN	-	no_errors	
SFRS14	10147	genome.wustl.edu	37	19	19115425	19115425	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19115425	19115425	G	A	SNP	SFRS14	NM_001017392	human	genbank	57_37b	-1	reviewed	silent	c.2481	p.F827	1.000	superfamily_Surp module (SWAP domain Pfam 01805),HMMSmart_SM00648,HMMPfam_Surp	superfamily_Surp module (SWAP domain Pfam 01805),HMMSmart_SM00648,HMMPfam_Surp,HMMSmart_SM00443,HMMPfam_G-patch	-	no_errors	
SIK2	23235	genome.wustl.edu	37	11	111575768	111575768	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	111575768	111575768	C	T	SNP	SIK2	NM_015191	human	genbank	57_37b	+1	validated	missense	c.1006	p.R336C	1.000	superfamily_Protein kinase-like (PK-like)	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
SNAPC4	6621	genome.wustl.edu	37	9	139275294	139275294	+	Missense_Mutation	SNP	G	G	C	rs3812571	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139275294	139275294	G	C	SNP	SNAPC4	NM_003086	human	genbank	57_37b	-1	validated	missense	c.2397	p.H799Q	0.999	NULL	HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding	-		
SON	6651	genome.wustl.edu	37	21	34924699	34924699	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	34924699	34924699	T	-	DEL	SON	NM_138927	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.3162	p.E1055fs	0.999	NULL	HMMSmart_SM00443,HMMPfam_G-patch,superfamily_dsRNA-binding domain-like,HMMPfam_dsrm	(deletion:cds_exon[34921782,34927697])	no_errors	
SPTA1	6708	genome.wustl.edu	37	1	158653171	158653171	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158653171	158653171	T	C	SNP	SPTA1	NM_003126	human	genbank	57_37b	-1	reviewed	missense	c.380	p.E127G	1.000	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_EF-hand,HMMPfam_efhand_Ca_insen	-	no_errors	
SRRM4	84530	genome.wustl.edu	37	12	119552154	119552154	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	119552154	119552154	G	A	SNP	SRRM4	NM_194286	human	genbank	57_37b	+1	validated	missense	c.350	p.R117Q	0.998	NULL	NULL	-	no_errors	
TBX22	50945	genome.wustl.edu	37	X	79282218	79282218	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	79282218	79282218	A	G	SNP	TBX22	NM_001109878	human	genbank	57_37b	+1	reviewed	missense	c.649	p.M217V	1.000	superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box	superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	-	no_errors	
TLR4	7099	genome.wustl.edu	37	9	120475992	120475992	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	120475992	120475992	A	G	SNP	TLR4	NM_138554	human	genbank	57_37b	+1	reviewed	missense	c.1586	p.H529R	1.000	superfamily_L domain-like,HMMSmart_SM00369	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR	-	no_errors	
TMEM90A	646658	genome.wustl.edu	37	14	74874370	74874370	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	74874370	74874370	G	A	SNP	TMEM90A	NM_001105579	human	genbank	57_37b	-1	validated	silent	c.585	p.D195	1.000	HMMPfam_CD225	HMMPfam_CD225	-	no_errors	
TNXB	7148	genome.wustl.edu	37	6	32029331	32029331	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32029331	32029331	G	A	SNP	TNXB	NM_019105	human	genbank	57_37b	-1	reviewed	silent	c.7335	p.Y2445	1.000	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00181,HMMPfam_EGF_2,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like,PatternScan_FIBRIN_AG_C_DOMAIN	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578212	7578212	G	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	nonsense	c.637	p.R213*	0.893	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179399740	179399774	+	Frame_Shift_Del	DEL	TCAGAATGGAAATTTCCTTCTTTACCAAAACCTGA	TCAGAATGGAAATTTCCTTCTTTACCAAAACCTGA	-	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	TCAGAATGGAAATTTCCTTCTTTACCAAAACCTGA	TCAGAATGGAAATTTCCTTCTTTACCAAAACCTGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179399740	179399774	TCAGAATGGAAATTTCCTTCTTTACCAAAACCTGA	-	DEL	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	frame_shift_del	c.93892_93858	p.D31286fs	1.000:0.444:0.995:0.997:0.923:1.000:1.000:0.996:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.977:1.000:1.000:0.998:1.000:1.000:0.999:1.000:1.000:0.936:1.000:1.000:1.000	HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	(deletion:cds_exon[179394968,179400576])	no_errors	
TUBB2C	10383	genome.wustl.edu	37	9	140137915	140137915	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140137915	140137915	G	A	SNP	TUBB2C	NM_006088	human	genbank	57_37b	+1	validated	missense	c.1245	p.M415I	1.000	superfamily_Tubulin C-terminal domain-like	PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors	
UBR1	197131	genome.wustl.edu	37	15	43347026	43347026	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	43347026	43347026	C	A	SNP	UBR1	NM_174916	human	genbank	57_37b	-1	reviewed	missense	c.1353	p.E451D	0.998	NULL	HMMPfam_zf-UBR,HMMSmart_SM00396,superfamily_ClpS-like,HMMPfam_ClpS,PatternScan_RIBOSOMAL_S16	-	no_errors	
UCP2	7351	genome.wustl.edu	37	11	73689330	73689330	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	73689330	73689330	A	T	SNP	UCP2	NM_003355	human	genbank	57_37b	-1	reviewed	missense	c.94	p.F32I	1.000	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors	
USH2A	7399	genome.wustl.edu	37	1	215848573	215848573	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	215848573	215848573	T	C	SNP	USH2A	NM_206933	human	genbank	57_37b	-1	reviewed	missense	c.12680	p.D4227G	1.000	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors	
USP17L2	377630	genome.wustl.edu	37	8	11996135	11996136	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	11996135	11996136	-	G	INS	USP17L2	NM_201402	human	genbank	57_37b	-1	validated	frame_shift_ins	c.135_134	p.E46fs	0.979:0.978	NULL	PatternScan_UCH_2_1,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_2	-	no_errors	
ZNF319	57567	genome.wustl.edu	37	16	58031098	58031098	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	58031098	58031098	G	C	SNP	ZNF319	NM_020807	human	genbank	57_37b	-1	provisional	missense	c.1072	p.L358V	1.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_SSF57667,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2	-	no_errors	
ZNF407	55628	genome.wustl.edu	37	18	72343892	72343892	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	72343892	72343892	G	C	SNP	ZNF407	NM_017757	human	genbank	57_37b	+1	reviewed	missense	c.917	p.R306T	0.001	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00451,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors	
ZNF671	79891	genome.wustl.edu	37	19	58232832	58232832	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JB-01A-11W-A071-09	TCGA-AO-A0JB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	58232832	58232832	C	T	SNP	ZNF671	NM_024833	human	genbank	57_37b	-1	validated	missense	c.622	p.D208N	0.325	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
