Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
C10orf119	79892	genome.wustl.edu	37	10	121591584	121591584	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	121591584	121591584	C	T	SNP	C10orf119	NM_024834	human	genbank	57_37b	-1	validated	missense	c.1742	p.R581Q	1.000	HMMPfam_DUF2044	HMMPfam_DUF2044	-	no_errors	
CDH11	1009	genome.wustl.edu	37	16	65032486	65032486	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	65032486	65032486	C	T	SNP	CDH11	NM_001797	human	genbank	57_37b	-1	reviewed	missense	c.502	p.V168M	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors	
COL7A1	1294	genome.wustl.edu	37	3	48609590	48609590	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	48609590	48609590	G	A	SNP	COL7A1	NM_000094	human	genbank	57_37b	-1	reviewed	silent	c.6993	p.D2331	0.990	HMMPfam_Collagen	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,HMMPfam_Collagen,superfamily_BPTI-like,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	-	no_errors	
CRABP1	1381	genome.wustl.edu	37	15	78633419	78633419	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	78633419	78633419	G	C	SNP	CRABP1	NM_004378	human	genbank	57_37b	+1	reviewed	silent	c.105	p.A35	0.252	superfamily_Lipocalins,HMMPfam_Lipocalin	superfamily_Lipocalins,HMMPfam_Lipocalin,PatternScan_FABP	-	no_errors	
ENSG00000234498	0	genome.wustl.edu	37	12	13028844	13028844	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	13028844	13028844	C	T	SNP	ENSG00000234498	ENST00000424500	human	ensembl	57_37b	+1	known	silent	c.412	p.L138	1.000	superfamily_Ribosomal protein L13	HMMPfam_Ribosomal_L13,superfamily_Ribosomal protein L13	-	no_errors	
GSPT2	23708	genome.wustl.edu	37	X	51488353	51488353	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	51488353	51488353	A	C	SNP	GSPT2	NM_018094	human	genbank	57_37b	+1	validated	missense	c.1631	p.H544P	1.000	HMMPfam_GTP_EFTU_D3,superfamily_Elong_init_C	HMMPfam_PAM2,superfamily_SSF52540,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,HMMPfam_GTP_EFTU_D3,superfamily_Elong_init_C	-	no_errors	
HSN2	378465	genome.wustl.edu	37	12	977684	977695	+	In_Frame_Del	DEL	CACCTATCAGTA	CACCTATCAGTA	-	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	CACCTATCAGTA	CACCTATCAGTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	977684	977695	CACCTATCAGTA	-	DEL	HSN2	NM_213655	human	genbank	57_37b	+1	reviewed	in_frame_del	c.689_700	p.PIST231in_frame_del	1.000:0.996:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000	NULL	NULL	(deletion:cds_exon[976996,978300])	no_errors	
METRNL	284207	genome.wustl.edu	37	17	81043039	81043039	+	Silent	SNP	A	A	G	rs9908756	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	81043039	81043039	A	G	SNP	METRNL	NM_001004431	human	genbank	57_37b	+1	provisional	silent	c.396	p.P132	0.546	NULL	NULL	-		
MGC42105	167359	genome.wustl.edu	37	5	43277278	43277278	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	43277278	43277278	G	A	SNP	MGC42105	NM_153361	human	genbank	57_37b	+1	provisional	missense	c.412	p.E138K	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
OR2G3	81469	genome.wustl.edu	37	1	247769321	247769321	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247769321	247769321	C	T	SNP	OR2G3	NM_001001914	human	genbank	57_37b	+1	provisional	missense	c.434	p.A145V	0.003	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR2T33	391195	genome.wustl.edu	37	1	248436408	248436408	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248436408	248436408	C	A	SNP	OR2T33	NM_001004695	human	genbank	57_37b	-1	provisional	missense	c.709	p.A237S	0.992	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OVCH1	341350	genome.wustl.edu	37	12	29604408	29604408	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	29604408	29604408	C	T	SNP	OVCH1	NM_183378	human	genbank	57_37b	-1	validated	nonsense	c.2625	p.W875*	0.802	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	-	no_errors	
PCNXL2	80003	genome.wustl.edu	37	1	233136049	233136049	+	Splice_Site	DEL	A	A	-	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	233136049	233136049	A	-	DEL	PCNXL2	NM_014801	human	genbank	57_37b	-1	provisional	splice_site_del	c.5328+2	e30+2	1.000	-	-	(deletion:intron[233135126,233136050])	no_errors	
PIGQ	9091	genome.wustl.edu	37	16	633125	633125	+	Missense_Mutation	SNP	T	T	C	rs1045277	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	633125	633125	T	C	SNP	PIGQ	NM_148920	human	genbank	57_37b	+1	reviewed	missense	c.1774	p.C592R	0.004	NULL	HMMPfam_Gpi1	-		
PRICKLE2	166336	genome.wustl.edu	37	3	64133064	64133064	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	64133064	64133064	C	T	SNP	PRICKLE2	NM_198859	human	genbank	57_37b	-1	validated	missense	c.1102	p.D368N	1.000	NULL	HMMPfam_PET,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_SSF57716	-	no_errors	
PTAR1	375743	genome.wustl.edu	37	9	72338284	72338284	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	72338284	72338284	A	C	SNP	PTAR1	NM_001099666	human	genbank	57_37b	-1	validated	missense	c.905	p.L302R	1.000	superfamily_Prenyl_trans,HMMPfam_PPTA	superfamily_Prenyl_trans,HMMPfam_PPTA	-	no_errors	
SLC45A4	57210	genome.wustl.edu	37	8	142228731	142228731	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	142228731	142228731	G	A	SNP	SLC45A4	NM_001080431	human	genbank	57_37b	-1	provisional	silent	c.855	p.H285	0.363	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors	
SLC4A4	8671	genome.wustl.edu	37	4	72429510	72429510	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	72429510	72429510	T	C	SNP	SLC4A4	NM_001098484	human	genbank	57_37b	+1	reviewed	missense	c.3100	p.S1034P	1.000	NULL	superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp	-	no_errors	
SYNPO2L	79933	genome.wustl.edu	37	10	75408227	75408227	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	75408227	75408227	G	A	SNP	SYNPO2L	NM_001114133	human	genbank	57_37b	-1	validated	missense	c.1183	p.R395C	1.000	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors	
TPTE2	93492	genome.wustl.edu	37	13	20006620	20006620	+	Silent	SNP	C	C	T	rs76525011	unknown	TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	20006620	20006620	C	T	SNP	TPTE2	NM_199254	human	genbank	57_37b	-1	validated	silent	c.1215	p.S405	0.023	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2	superfamily_Voltage-gated potassium channels,superfamily_(Phosphotyrosine protein) phosphatases II,PatternScan_TYR_PHOSPHATASE_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2	-		
