Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCA3	21	genome.wustl.edu	37	16	2334368	2334368	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2334368	2334368	C	A	SNP	ABCA3	NM_001089	human	genbank	57_37b	-1	reviewed	silent	c.3774	p.G1258	0.995	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ABCC9	10060	genome.wustl.edu	37	12	22035726	22035727	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	22035726	22035727	-	G	INS	ABCC9	NM_005691	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.1993_1992	p.A664fs	0.000:0.000	NULL	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
APLP2	334	genome.wustl.edu	37	11	129991670	129991670	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	129991670	129991670	G	T	SNP	APLP2	NM_001642	human	genbank	57_37b	+1	validated	missense	c.678	p.E226D	0.001	NULL	HMMPfam_A4_EXTRA,HMMSmart_SM00006,superfamily_A heparin-binding domain,superfamily_Amyloid beta a4 protein copper binding domain (domain 2),PatternScan_A4_EXTRA,superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1,superfamily_CAPPD an extracellular domain of amyloid beta A4 protein,HMMPfam_APP_amyloid,PatternScan_A4_INTRA	-	no_errors	
APOF	319	genome.wustl.edu	37	12	56755521	56755521	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56755521	56755521	G	T	SNP	APOF	NM_001638	human	genbank	57_37b	-1	reviewed	missense	c.469	p.Q157K	0.000	NULL	NULL	-	no_errors	
ATP2C1	27032	genome.wustl.edu	37	3	130694222	130694222	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	130694222	130694222	T	-	DEL	ATP2C1	NM_001001486	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1460	p.K488fs	1.000	superfamily_Calcium ATPase transmembrane domain M,superfamily_HAD-like,HMMPfam_Hydrolase,superfamily_Metal cation-transporting ATPase ATP-binding domain N	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	(deletion:cds_exon[130694176,130694332])	no_errors	
BEND4	0	genome.wustl.edu	37	4	42119673	42119673	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	42119673	42119673	G	A	SNP	BEND4	NM_207406	human	genbank	57_37b	-1	validated	silent	c.1467	p.D489	0.126	HMMPfam_BEN	HMMPfam_BEN	-	no_errors	
C9orf43	257169	genome.wustl.edu	37	9	116175849	116175849	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	116175849	116175849	G	T	SNP	C9orf43	NM_152786	human	genbank	57_37b	+1	predicted	missense	c.76	p.A26S	0.985	NULL	NULL	-	no_errors	
CCNB1IP1	57820	genome.wustl.edu	37	14	20781865	20781865	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	20781865	20781865	G	C	SNP	CCNB1IP1	NM_021178	human	genbank	57_37b	-1	validated	missense	c.393	p.S131R	1.000	NULL	PatternScan_ZF_RING_1	-	no_errors	
COL6A2	1292	genome.wustl.edu	37	21	47545207	47545207	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	47545207	47545207	G	A	SNP	COL6A2	NM_001849	human	genbank	57_37b	+1	reviewed	missense	c.1798	p.E600K	1.000	NULL	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Collagen	-	no_errors	
CSH2	1443	genome.wustl.edu	37	17	61949915	61949915	+	Missense_Mutation	SNP	C	A	A	rs1811082	byCluster	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	61949915	61949915	C	A	SNP	CSH2	NM_022644	human	genbank	57_37b	-1	reviewed	missense	c.478	p.A160S	0.000	superfamily_4_helix_cytokine	HMMPfam_Hormone_1,superfamily_4_helix_cytokine,PatternScan_SOMATOTROPIN_1	-		
CYP4F8	11283	genome.wustl.edu	37	19	15730474	15730474	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15730474	15730474	C	A	SNP	CYP4F8	ENST00000441682	human	ensembl	57_37b	+1	known	missense	c.426	p.D142E	1.000	superfamily_Cytochrome P450,HMMPfam_p450	superfamily_Cytochrome P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	-	no_errors	
DCDC5	196296	genome.wustl.edu	37	11	30953328	30953328	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	30953328	30953328	G	A	SNP	DCDC5	XM_002343054	human	genbank	57_37b	-1	model	missense	c.124	p.R42W	0.010	NULL	superfamily_Doublecortin (DC),HMMSmart_SM00537,HMMPfam_DCX	-	no_errors	
DTWD2	285605	genome.wustl.edu	37	5	118176639	118176639	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	118176639	118176639	T	A	SNP	DTWD2	NM_173666	human	genbank	57_37b	-1	validated	missense	c.870	p.E290D	0.994	NULL	HMMPfam_DTW	-	no_errors	
E4F1	1877	genome.wustl.edu	37	16	2273638	2273638	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2273638	2273638	G	A	SNP	E4F1	NM_004424	human	genbank	57_37b	+1	reviewed	silent	c.24	p.R8	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ELN	2006	genome.wustl.edu	37	7	73474233	73474233	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	73474233	73474233	G	C	SNP	ELN	NM_000501	human	genbank	57_37b	+1	reviewed	missense	c.1432	p.G478R	0.809	NULL	PatternScan_ENDONUCLEASE_III_2,PatternScan_HEXAPEP_TRANSFERASES	-	no_errors	
ENSG00000212664	0	genome.wustl.edu	37	15	71633600	71633600	+	Missense_Mutation	SNP	G	G	A	rs7178754	byCluster	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	71633600	71633600	G	A	SNP	ENSG00000212664	ENST00000401798	human	ensembl	57_37b	-1	known	missense	c.452	p.T151M	1.000	superfamily_Ribosomal protein L22,HMMPfam_Ribosomal_L22	superfamily_Ribosomal protein L22,HMMPfam_Ribosomal_L22	-		
ENSG00000247354	0	genome.wustl.edu	37	1	211748727	211748727	+	RNA	SNP	G	G	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	211748727	211748727	G	C	SNP	ENSG00000247354	ENST00000500383	human	ensembl	57_37b	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	
FAM38A	9780	genome.wustl.edu	37	16	88782406	88782406	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	88782406	88782406	C	T	SNP	FAM38A	ENST00000451779	human	ensembl	57_37b	-1	known	silent	c.5862	p.L1954	1.000	NULL	PatternScan_IG_MHC	-	no_errors	
FBXO10	26267	genome.wustl.edu	37	9	37512576	37512576	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	37512576	37512576	T	G	SNP	FBXO10	NM_012166	human	genbank	57_37b	-1	validated	missense	c.2839	p.S947R	1.000	NULL	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF81383,superfamily_Pectin_lyas_like,HMMSmart_PbH1,HMMSmart_CASH	-	no_errors	
GPHN	10243	genome.wustl.edu	37	14	67390979	67390979	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	67390979	67390979	C	T	SNP	GPHN	NM_020806	human	genbank	57_37b	+1	reviewed	silent	c.798	p.I266	1.000	NULL	superfamily_MoCF_biosynth,HMMPfam_MoCF_biosynth,PatternScan_MOCF_BIOSYNTHESIS_1,superfamily_MoeA_N,HMMPfam_MoeA_N,PatternScan_MOCF_BIOSYNTHESIS_2,superfamily_MoeA_C,HMMPfam_MoeA_C	-	no_errors	
HECTD1	25831	genome.wustl.edu	37	14	31637616	31637616	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	31637616	31637616	C	T	SNP	HECTD1	NM_015382	human	genbank	57_37b	-1	validated	missense	c.1510	p.E504K	1.000	superfamily_ARM repeat	superfamily_ARM repeat,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Galactose-binding domain-like,HMMPfam_Sad1_UNC,HMMPfam_MIB_HERC2,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors	
HIST2H2AC	8338	genome.wustl.edu	37	1	149858815	149858815	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	149858815	149858815	G	A	SNP	HIST2H2AC	NM_003517	human	genbank	57_37b	+1	reviewed	silent	c.291	p.L97	0.978	superfamily_Histone-fold,HMMSmart_SM00414	superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A	-	no_errors	
HMGN5	79366	genome.wustl.edu	37	X	80370453	80370453	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	80370453	80370453	C	T	SNP	HMGN5	NM_030763	human	genbank	57_37b	-1	reviewed	missense	c.544	p.G182R	0.000	NULL	HMMPfam_HMG14_17,HMMSmart_SM00527,PatternScan_HMG14_17	-	no_errors	
HRNR	388697	genome.wustl.edu	37	1	152186053	152186053	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152186053	152186053	A	G	SNP	HRNR	NM_001009931	human	genbank	57_37b	-1	validated	silent	c.8052	p.Y2684	0.000	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK	-	no_errors	
IL23R	149233	genome.wustl.edu	37	1	67635217	67635217	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	67635217	67635217	G	T	SNP	IL23R	NM_144701	human	genbank	57_37b	+1	reviewed	missense	c.263	p.W88L	0.007	NULL	superfamily_Fibronectin type III,HMMPfam_fn3	-	no_errors	
IQCF6	0	genome.wustl.edu	37	3	51812782	51812789	+	Frame_Shift_Del	DEL	GCCTGCGG	GCCTGCGG	-	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	GCCTGCGG	GCCTGCGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	51812782	51812789	GCCTGCGG	-	DEL	IQCF6	NM_001143833	human	genbank	57_37b	-1	validated	frame_shift_del	c.181_174	p.R59fs	0.260:0.260:0.876:0.936:0.979:0.994:1.000:1.000	HMMPfam_IQ	HMMPfam_IQ	(deletion:cds_exon[51812639,51812962])	no_errors	
IRS4	8471	genome.wustl.edu	37	X	107976825	107976825	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	107976825	107976825	C	A	SNP	IRS4	NM_003604	human	genbank	57_37b	-1	reviewed	missense	c.2750	p.S917I	0.906	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI	-	no_errors	
KCNA6	3742	genome.wustl.edu	37	12	4919815	4919815	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	4919815	4919815	G	T	SNP	KCNA6	NM_002235	human	genbank	57_37b	+1	reviewed	missense	c.608	p.G203V	0.768	superfamily_SSF81324	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans	-	no_errors	
KIAA2022	340533	genome.wustl.edu	37	X	73963226	73963226	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	73963226	73963226	C	A	SNP	KIAA2022	NM_001008537	human	genbank	57_37b	-1	validated	missense	c.1166	p.G389V	0.012	NULL	NULL	-	no_errors	
KLHL3	26249	genome.wustl.edu	37	5	136974658	136974658	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	136974658	136974658	G	C	SNP	KLHL3	NM_017415	human	genbank	57_37b	-1	validated	silent	c.1203	p.G401	1.000	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors	
LAMA1	284217	genome.wustl.edu	37	18	6978265	6978265	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	6978265	6978265	A	G	SNP	LAMA1	NM_005559	human	genbank	57_37b	-1	validated	silent	c.6120	p.S2040	0.000	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_II	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMSmart_SM00282,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2	-	no_errors	
LCK	3932	genome.wustl.edu	37	1	32742302	32742302	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	32742302	32742302	G	A	SNP	LCK	NM_001042771	human	genbank	57_37b	+1	reviewed	silent	c.879	p.K293	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
LIF	3976	genome.wustl.edu	37	22	30640840	30640840	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	30640840	30640840	A	C	SNP	LIF	NM_002309	human	genbank	57_37b	-1	reviewed	missense	c.102	p.C34W	0.004	HMMPfam_LIF_OSM,superfamily_4-helical cytokines,HMMSmart_SM00080	HMMPfam_LIF_OSM,superfamily_4-helical cytokines,HMMSmart_SM00080,PatternScan_LIF_OSM	-	no_errors	
LMTK3	114783	genome.wustl.edu	37	19	49004803	49004820	+	Frame_Shift_Del	DEL	TGCGCAGGGCCAGGTCGC	TGCGCAGGGCCAGGTCGC	-	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	TGCGCAGGGCCAGGTCGC	TGCGCAGGGCCAGGTCGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49004803	49004820	TGCGCAGGGCCAGGTCGC	-	DEL	LMTK3	NM_001080434	human	genbank	57_37b	-1	provisional	frame_shift_del	c.898_882	p.S294fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	(deletion:cds_exon[49004735,49004819], intron[49004820,49005689])	no_errors	
LOC100288367	0	genome.wustl.edu	37	15	84948710	84948710	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	84948710	84948710	T	G	SNP	LOC100288367	XM_002343378	human	genbank	57_37b	+1	model	missense	c.223	p.L75V	0.239	NULL	NULL	-	no_errors	
LPHN3	23284	genome.wustl.edu	37	4	62812716	62812716	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	62812716	62812716	A	-	DEL	LPHN3	NM_015236	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2300	p.A768fs	1.000	superfamily_Family A G protein-coupled receptor-like	HMMPfam_Gal_Lectin,HMMPfam_OLF,HMMSmart_SM00284,HMMSmart_SM00008,HMMPfam_HRM,superfamily_Family A G protein-coupled receptor-like,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_Latrophilin	(deletion:cds_exon[62812632,62812840])	no_errors	
LRRC24	441381	genome.wustl.edu	37	8	145748740	145748740	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145748740	145748740	C	T	SNP	LRRC24	NM_001024678	human	genbank	57_37b	-1	validated	missense	c.661	p.E221K	0.694	superfamily_L domain-like,HMMSmart_SM00082	HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	-	no_errors	
MAN2A1	4124	genome.wustl.edu	37	5	109202637	109202637	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	109202637	109202637	A	G	SNP	MAN2A1	NM_002372	human	genbank	57_37b	+1	reviewed	missense	c.3373	p.N1125D	1.000	HMMPfam_Glyco_hydro_38C	superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38,superfamily_SSF88688,HMMPfam_Alpha-mann_mid,superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C	-	no_errors	
MS4A14	84689	genome.wustl.edu	37	11	60165424	60165424	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	60165424	60165424	A	T	SNP	MS4A14	NM_032597	human	genbank	57_37b	+1	validated	missense	c.238	p.T80S	0.000	HMMPfam_CD20	HMMPfam_CD20	-	no_errors	
MUC16	94025	genome.wustl.edu	37	19	9090622	9090622	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9090622	9090622	C	G	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	missense	c.1193	p.G398A	0.002	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors	
MYO1H	283446	genome.wustl.edu	37	12	109841786	109841786	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	109841786	109841786	G	A	SNP	MYO1H	NM_001101421	human	genbank	57_37b	+1	provisional	splice_site	c.703-1	e6-1	1.000	-	-	-	no_errors	
NEK11	79858	genome.wustl.edu	37	3	130947412	130947420	+	In_Frame_Del	DEL	TGATGCATT	TGATGCATT	-	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	TGATGCATT	TGATGCATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	130947412	130947420	TGATGCATT	-	DEL	NEK11	NM_024800	human	genbank	57_37b	+1	reviewed	in_frame_del	c.1440_1448	p.AFD482in_frame_del	0.200:0.389:0.363:0.017:0.007:0.000:0.000:0.976:1.000	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[130947372,130947532])	no_errors	
PCNT	5116	genome.wustl.edu	37	21	47783642	47783642	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	47783642	47783642	A	G	SNP	PCNT	NM_006031	human	genbank	57_37b	+1	reviewed	missense	c.2402	p.D801G	0.927	NULL	HMMPfam_PACT_coil_coil	-	no_errors	
PDE3A	5139	genome.wustl.edu	37	12	20766614	20766614	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	20766614	20766614	G	C	SNP	PDE3A	NM_000921	human	genbank	57_37b	+1	validated	missense	c.1249	p.D417H	1.000	NULL	superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors	
PDS5A	23244	genome.wustl.edu	37	4	39864689	39864689	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	39864689	39864689	T	G	SNP	PDS5A	NM_001100399	human	genbank	57_37b	-1	validated	missense	c.2771	p.E924A	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
PKHD1	5314	genome.wustl.edu	37	6	51609274	51609274	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	51609274	51609274	C	T	SNP	PKHD1	NM_138694	human	genbank	57_37b	-1	reviewed	silent	c.10065	p.K3355	0.982	NULL	superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMSmart_SM00710,HMMPfam_G8,superfamily_Pectin lyase-like	-	no_errors	
PKHD1L1	93035	genome.wustl.edu	37	8	110467029	110467029	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	110467029	110467029	T	C	SNP	PKHD1L1	NM_177531	human	genbank	57_37b	+1	validated	silent	c.6822	p.P2274	0.742	HMMPfam_G8	superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMSmart_SM00758,superfamily_Anthrax protective antigen,HMMSmart_SM00710,superfamily_Cupredoxins,HMMPfam_G8,superfamily_Pectin lyase-like	-	no_errors	
PLA2G6	8398	genome.wustl.edu	37	22	38512192	38512210	+	Frame_Shift_Del	DEL	TCAGACAGTGTCCCTGTCA	TCAGACAGTGTCCCTGTCA	-	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	TCAGACAGTGTCCCTGTCA	TCAGACAGTGTCCCTGTCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	38512192	38512210	TCAGACAGTGTCCCTGTCA	-	DEL	PLA2G6	NM_003560	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1769_1751	p.L584fs	1.000:1.000:0.898:0.994:1.000:1.000:1.000:0.998:0.390:0.997:1.000:1.000:1.000:0.994:0.004:1.000:1.000:1.000:1.000	superfamily_FabD/lysophospholipase-like,HMMPfam_Patatin	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_FabD/lysophospholipase-like,HMMPfam_Patatin	(deletion:cds_exon[38512082,38512218])	no_errors	
PRKAR2B	5577	genome.wustl.edu	37	7	106786812	106786812	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	106786812	106786812	A	G	SNP	PRKAR2B	NM_002736	human	genbank	57_37b	+1	reviewed	missense	c.647	p.D216G	1.000	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding	HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_RIIa,HMMSmart_RIIa,superfamily_cAMP-dep_prot_kin_reg_I/II_a/b,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding	-	no_errors	
RARA	5914	genome.wustl.edu	37	17	38508182	38508184	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	38508182	38508184	AAG	-	DEL	RARA	NM_000964	human	genbank	57_37b	+1	validated	in_frame_del	c.490_492	p.K167in_frame_del	1.000:1.000:1.000	superfamily_Nuclear receptor ligand-binding domain	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00399,HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	(deletion:cds_exon[38508162,38508322])	no_errors	
RDH5	5959	genome.wustl.edu	37	12	56115089	56115089	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56115089	56115089	G	T	SNP	RDH5	NM_002905	human	genbank	57_37b	+1	reviewed	missense	c.121	p.G41W	1.000	superfamily_NAD(P)-bd,HMMPfam_adh_short	PatternScan_ADH_SHORT,superfamily_NAD(P)-bd,HMMPfam_adh_short	-	no_errors	
RIMS3	9783	genome.wustl.edu	37	1	41098846	41098846	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	41098846	41098846	A	T	SNP	RIMS3	NM_014747	human	genbank	57_37b	-1	validated	missense	c.367	p.F123I	1.000	NULL	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors	
ROS1	6098	genome.wustl.edu	37	6	117609902	117609902	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	117609902	117609902	G	C	SNP	ROS1	NM_002944	human	genbank	57_37b	-1	reviewed	missense	c.6797	p.T2266R	1.000	NULL	HMMSmart_FN3,HMMPfam_fn3,superfamily_FN_III-like,superfamily_SSF63825,HMMSmart_LY,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	-	no_errors	
S100A10	6281	genome.wustl.edu	37	1	151958603	151958603	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	151958603	151958603	A	C	SNP	S100A10	NM_002966	human	genbank	57_37b	-1	reviewed	missense	c.104	p.M35R	1.000	superfamily_EF-hand,HMMPfam_S_100	superfamily_EF-hand,HMMPfam_S_100,PatternScan_S100_CABP	-	no_errors	
SALL1	6299	genome.wustl.edu	37	16	51173646	51173646	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	51173646	51173646	C	T	SNP	SALL1	NM_002968	human	genbank	57_37b	-1	reviewed	missense	c.2487	p.M829I	1.000	NULL	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	
SC4MOL	6307	genome.wustl.edu	37	4	166254530	166254530	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	166254530	166254530	C	G	SNP	SC4MOL	NM_006745	human	genbank	57_37b	+1	reviewed	missense	c.8	p.T3R	0.002	NULL	HMMPfam_FA_hydroxylase	-	no_errors	
SCAF1	58506	genome.wustl.edu	37	19	50157992	50157992	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50157992	50157992	C	G	SNP	SCAF1	NM_021228	human	genbank	57_37b	+1	validated	silent	c.3483	p.P1161	1.000	NULL	NULL	-	no_errors	
SCN2A	6326	genome.wustl.edu	37	2	166152454	166152454	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	166152454	166152454	C	T	SNP	SCN2A	NM_001040142	human	genbank	57_37b	+1	reviewed	missense	c.121	p.R41C	1.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_SM00015,HMMPfam_IQ	-	no_errors	
SEC24D	9871	genome.wustl.edu	37	4	119689345	119689345	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	119689345	119689345	C	G	SNP	SEC24D	NM_014822	human	genbank	57_37b	-1	reviewed	missense	c.1163	p.C388S	1.000	superfamily_beta-sandwich domain of Sec23/24,HMMPfam_zf-Sec23_Sec24	superfamily_beta-sandwich domain of Sec23/24,HMMPfam_zf-Sec23_Sec24,HMMPfam_Sec23_trunk,superfamily_vWA-like,HMMPfam_Sec23_BS,superfamily_Helical domain of Sec23/24,HMMPfam_Sec23_helical,superfamily_C-terminal gelsolin-like domain of Sec23/24,HMMPfam_Gelsolin	-	no_errors	
SEMA3D	223117	genome.wustl.edu	37	7	84671502	84671502	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	84671502	84671502	A	-	DEL	SEMA3D	NM_152754	human	genbank	57_37b	-1	validated	frame_shift_del	c.961	p.Y321fs	1.000	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG	(deletion:cds_exon[84671487,84671601])	no_errors	
TBC1D19	55296	genome.wustl.edu	37	4	26685350	26685350	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	26685350	26685350	G	T	SNP	TBC1D19	NM_018317	human	genbank	57_37b	+1	validated	missense	c.870	p.L290F	1.000	HMMSmart_SM00164	HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors	
TFAP2B	7021	genome.wustl.edu	37	6	50796376	50796376	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	50796376	50796376	G	C	SNP	TFAP2B	NM_003221	human	genbank	57_37b	+1	reviewed	missense	c.585	p.Q195H	1.000	NULL	HMMPfam_TF_AP-2	-	no_errors	
TNS3	64759	genome.wustl.edu	37	7	47440029	47440029	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	47440029	47440029	C	A	SNP	TNS3	NM_022748	human	genbank	57_37b	-1	validated	missense	c.880	p.V294F	1.000	HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PTB	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	G	G	rs28934576	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577120	7577120	C	G	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.818	p.R273P	0.864	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-		
TXNDC6	347736	genome.wustl.edu	37	3	138023764	138023764	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	138023764	138023764	C	T	SNP	TXNDC6	NM_178130	human	genbank	57_37b	-1	provisional	missense	c.559	p.V187I	0.033	HMMPfam_NDK,superfamily_NDK,HMMSmart_NDK	superfamily_Thiordxn-like_fd,PatternScan_THIOREDOXIN_1,HMMPfam_NDK,superfamily_NDK,HMMSmart_NDK	-	no_errors	
VWA3A	146177	genome.wustl.edu	37	16	22111704	22111704	+	Silent	SNP	G	G	A	rs72640484	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	22111704	22111704	G	A	SNP	VWA3A	ENST00000310694	human	ensembl	57_37b	+1	known	silent	c.15	p.P5	0.000	NULL	NULL	-		
WDR44	54521	genome.wustl.edu	37	X	117576637	117576637	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	117576637	117576637	G	A	SNP	WDR44	NM_019045	human	genbank	57_37b	+1	validated	missense	c.2378	p.S793N	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
ZFHX4	79776	genome.wustl.edu	37	8	77767858	77767858	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	77767858	77767858	A	G	SNP	ZFHX4	NM_024721	human	genbank	57_37b	+1	validated	missense	c.8566	p.T2856A	0.996	NULL	HMMSmart_SM00355,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
ZNF506	440515	genome.wustl.edu	37	19	19905658	19905658	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19905658	19905658	A	G	SNP	ZNF506	NM_001099269	human	genbank	57_37b	-1	validated	silent	c.1038	p.C346	1.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF518A	9849	genome.wustl.edu	37	10	97919007	97919045	+	In_Frame_Del	DEL	TGGGATGGTTTTAACACTTAATAATGGGAAACTTGAAGG	TGGGATGGTTTTAACACTTAATAATGGGAAACTTGAAGG	-	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	TGGGATGGTTTTAACACTTAATAATGGGAAACTTGAAGG	TGGGATGGTTTTAACACTTAATAATGGGAAACTTGAAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	97919007	97919045	TGGGATGGTTTTAACACTTAATAATGGGAAACTTGAAGG	-	DEL	ZNF518A	ENST00000371192	human	ensembl	57_37b	+1	known	in_frame_del	c.2928_2966	p.GMVLTLNNGKLEG977in_frame_del	1.000:1.000:1.000:0.999:1.000:1.000:1.000:0.993:1.000:1.000:0.999:1.000:0.992:0.992:0.987:0.916:0.887:0.947:0.947:0.987:0.987:0.986:0.987:0.982:0.986:0.973:0.960:0.732:0.654:0.602:0.389:0.241:0.244:0.972:1.000:0.998:0.934:0.468:0.312	NULL	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	(deletion:cds_exon[97916080,97920123])	no_errors	
ZNF577	84765	genome.wustl.edu	37	19	52381666	52381666	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0TP-01A-11D-A099-09	TCGA-AR-A0TP-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52381666	52381666	T	C	SNP	ZNF577	NM_032679	human	genbank	57_37b	-1	validated	missense	c.163	p.N55D	0.955	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
