Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACSL6	23305	genome.wustl.edu	37	5	131308520	131308520	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	131308520	131308520	C	T	SNP	ACSL6	NM_001009185	human	genbank	57_37b	-1	validated	missense	c.1235	p.R412H	1.000	superfamily_SSF56801	superfamily_SSF56801,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors	
ADD1	118	genome.wustl.edu	37	4	2877718	2877718	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	2877718	2877718	G	A	SNP	ADD1	NM_014189	human	genbank	57_37b	+1	reviewed	missense	c.76	p.D26N	1.000	NULL	superfamily_Aldolase_II_N,HMMPfam_Aldolase_II	-	no_errors	
AMACR	23600	genome.wustl.edu	37	5	34008100	34008100	+	Missense_Mutation	SNP	C	C	T	rs3195676	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	34008100	34008100	C	T	SNP	AMACR	NM_014324	human	genbank	57_37b	-1	reviewed	missense	c.25	p.V9M	0.000	superfamily_CoA-transferase family III (CaiB/BaiF),PatternScan_ALDEHYDE_DEHYDR_GLU	superfamily_CoA-transferase family III (CaiB/BaiF),PatternScan_ALDEHYDE_DEHYDR_GLU,HMMPfam_CoA_transf_3	-		
ANK1	286	genome.wustl.edu	37	8	41571692	41571692	+	Silent	SNP	G	G	T	rs61753679	byCluster;by1000genomes	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	41571692	41571692	G	T	SNP	ANK1	NM_001142446	human	genbank	57_37b	-1	reviewed	silent	c.1881	p.S627	0.995	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,HMMSmart_ZU5,HMMSmart_DEATH,superfamily_DEATH_like,HMMPfam_Death	-		
C14orf68	283600	genome.wustl.edu	37	14	100795139	100795139	+	Missense_Mutation	SNP	G	G	T	rs35007880	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	100795139	100795139	G	T	SNP	C14orf68	NM_207117	human	genbank	57_37b	+1	validated	missense	c.404	p.R135L	0.466	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	HMMPfam_Mito_carr,superfamily_Mitochondrial carrier	-		
CDADC1	81602	genome.wustl.edu	37	13	49852559	49852559	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	49852559	49852559	A	C	SNP	CDADC1	NM_030911	human	genbank	57_37b	+1	provisional	missense	c.1124	p.Y375S	1.000	HMMPfam_dCMP_cyt_deam_1,superfamily_Cytidine deaminase-like	superfamily_Cytidine deaminase-like,HMMPfam_dCMP_cyt_deam_1,PatternScan_CYT_DCMP_DEAMINASES	-	no_errors	
CELSR1	9620	genome.wustl.edu	37	22	46760481	46760481	+	Missense_Mutation	SNP	C	C	G	rs9615351	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	46760481	46760481	C	G	SNP	CELSR1	NM_014246	human	genbank	57_37b	-1	reviewed	missense	c.8707	p.E2903Q	0.007	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00179,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_ASX_HYDROXYL,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-		
CHRM2	1129	genome.wustl.edu	37	7	136700644	136700644	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	136700644	136700644	G	T	SNP	CHRM2	NM_000739	human	genbank	57_37b	+1	reviewed	silent	c.1032	p.V344	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
CXorf58	254158	genome.wustl.edu	37	X	23957372	23957372	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	23957372	23957372	G	A	SNP	CXorf58	NM_152761	human	genbank	57_37b	+1	validated	silent	c.951	p.T317	0.000	NULL	NULL	-	no_errors	
DDR2	4921	genome.wustl.edu	37	1	162737075	162737075	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	162737075	162737075	G	C	SNP	DDR2	NM_001014796	human	genbank	57_37b	+1	reviewed	missense	c.1219	p.A407P	1.000	NULL	HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	-	no_errors	
DLG5	9231	genome.wustl.edu	37	10	79590037	79590037	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	79590037	79590037	C	T	SNP	DLG5	NM_004747	human	genbank	57_37b	-1	reviewed	silent	c.1947	p.P649	0.035	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	superfamily_DEATH domain,HMMPfam_CARD,HMMPfam_DUF622,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,PatternScan_RCC1_2,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072,HMMPfam_Guanylate_kin,HMMPfam_Gua_kin_assoc_C	-	no_errors	
DNAH8	1769	genome.wustl.edu	37	6	38750824	38750824	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	38750824	38750824	C	G	SNP	DNAH8	NM_001371	human	genbank	57_37b	+1	validated	missense	c.1653	p.I551M	0.991	HMMPfam_DHC_N1	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
DUSP13	51207	genome.wustl.edu	37	10	76854523	76854523	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	76854523	76854523	C	T	SNP	DUSP13	NM_001007273	human	genbank	57_37b	-1	reviewed	missense	c.787	p.A263T	0.996	superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195	superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
ENSG00000186629	0	genome.wustl.edu	37	19	6971253	6971253	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6971253	6971253	T	A	SNP	ENSG00000186629	ENST00000359590	human	ensembl	57_37b	-1	known	missense	c.725	p.H242L	0.997	HMMPfam_7tm_2	PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	
ENSG00000238643	0	genome.wustl.edu	37	GL000229.1	17347	17347	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	GL000229.1	17347	17347	G	A	SNP	ENSG00000238643	ENST00000459109	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors	
EPS15L1	58513	genome.wustl.edu	37	19	16528407	16528407	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	16528407	16528407	C	T	SNP	EPS15L1	NM_021235	human	genbank	57_37b	-1	provisional	silent	c.1149	p.V383	0.999	NULL	superfamily_SSF47473,HMMSmart_EH,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors	
FCRL5	83416	genome.wustl.edu	37	1	157512693	157512693	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	157512693	157512693	C	T	SNP	FCRL5	NM_031281	human	genbank	57_37b	-1	validated	missense	c.1079	p.G360D	0.218	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors	
GATA3	2625	genome.wustl.edu	37	10	8111503	8111504	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8111503	8111504	-	C	INS	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.992_993	p.R331fs	1.000:0.914	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors	
GIMAP5	55340	genome.wustl.edu	37	7	150439553	150439553	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150439553	150439553	C	T	SNP	GIMAP5	NM_018384	human	genbank	57_37b	+1	reviewed	missense	c.326	p.P109L	0.905	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AIG1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AIG1	-	no_errors	
HLA-C	3107	genome.wustl.edu	37	6	31238930	31238930	+	Missense_Mutation	SNP	A	A	C	rs116683968	by1000genomes	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	31238930	31238930	A	C	SNP	HLA-C	NM_002117	human	genbank	57_37b	-1	reviewed	missense	c.539	p.L180R	0.000	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,HMMPfam_MHC_I_C	-		
HOXD3	3232	genome.wustl.edu	37	2	177036754	177036754	+	Silent	SNP	T	T	C	rs1051929	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	177036754	177036754	T	C	SNP	HOXD3	NM_006898	human	genbank	57_37b	+1	reviewed	silent	c.1051	p.L351	1.000	NULL	PatternScan_ANTENNAPEDIA,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-		
IGSF9B	22997	genome.wustl.edu	37	11	133805585	133805585	+	Silent	SNP	C	C	T	rs329637	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	133805585	133805585	C	T	SNP	IGSF9B	NM_014987	human	genbank	57_37b	-1	validated	silent	c.894	p.S298	0.015	HMMPfam_I-set,superfamily_SSF48726,HMMSmart_FN3,HMMSmart_IGc2	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_fn3	-		
KIF26A	26153	genome.wustl.edu	37	14	104641792	104641792	+	Silent	SNP	C	C	T	rs2487305	byCluster;by2Hit2Allele;by1000genomes	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	104641792	104641792	C	T	SNP	KIF26A	NM_015656	human	genbank	57_37b	+1	validated	silent	c.2667	p.A889	0.000	NULL	PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin	-		
LOC100287558	0	genome.wustl.edu	37	14	73712922	73712922	+	Missense_Mutation	SNP	T	T	C	rs12895249	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	73712922	73712922	T	C	SNP	LOC100287558	XM_002343284	human	genbank	57_37b	-1	model	missense	c.1974	p.I658M	0.003	NULL	NULL	-		
LOC100288997	0	genome.wustl.edu	37	15	91479663	91479663	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	91479663	91479663	G	T	SNP	LOC100288997	XM_002343396	human	genbank	57_37b	-1	model	missense	c.2677	p.P893T	0.920	NULL	NULL	-	no_errors	
LOC346329	346329	genome.wustl.edu	37	7	65971009	65971009	+	RNA	SNP	T	T	G	rs3735148	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	65971009	65971009	T	G	SNP	LOC346329	XR_016257	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.021	-	-	-		
LOC388996	388996	genome.wustl.edu	37	2	91777739	91777739	+	RNA	SNP	T	T	A	rs4518004	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	91777739	91777739	T	A	SNP	LOC388996	XR_017571	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.991	-	-	-		
LOC644037	644037	genome.wustl.edu	37	5	79655320	79655320	+	RNA	SNP	G	G	A	rs34151840	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	79655320	79655320	G	A	SNP	LOC644037	XR_017337	human	genbank	57_37b	-1	model	rna	NULL	NULL	1.000	-	-	-		
LOC727803	727803	genome.wustl.edu	37	12	77378377	77378377	+	RNA	SNP	A	A	G	rs11609363	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	77378377	77378377	A	G	SNP	LOC727803	XR_015131	human	genbank	57_37b	-1	model	rna	NULL	NULL	1.000	-	-	-		
MS4A6E	245802	genome.wustl.edu	37	11	60102443	60102443	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	60102443	60102443	G	A	SNP	MS4A6E	NM_139249	human	genbank	57_37b	+1	reviewed	silent	c.75	p.E25	0.001	HMMPfam_CD20	HMMPfam_CD20	-	no_errors	
NCOA3	8202	genome.wustl.edu	37	20	46264755	46264755	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	46264755	46264755	C	T	SNP	NCOA3	NM_181659	human	genbank	57_37b	+1	reviewed	missense	c.1625	p.S542L	1.000	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_PAS,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_SRC-1,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_Nuc_rec_co-act,HMMPfam_DUF1518	-	no_errors	
NPW	283869	genome.wustl.edu	37	16	2070568	2070568	+	Missense_Mutation	SNP	A	A	C	rs2286472	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2070568	2070568	A	C	SNP	NPW	NM_001099456	human	genbank	57_37b	+1	reviewed	missense	c.446	p.D149A	0.000	NULL	NULL	-		
P2RX2	22953	genome.wustl.edu	37	12	133196596	133196596	+	Silent	SNP	T	T	C	rs7964634	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	133196596	133196596	T	C	SNP	P2RX2	NM_170683	human	genbank	57_37b	+1	reviewed	silent	c.468	p.T156	0.766	HMMPfam_P2X_receptor	HMMPfam_P2X_receptor,PatternScan_P2X_RECEPTOR	-		
PFAS	5198	genome.wustl.edu	37	17	8168224	8168224	+	Silent	SNP	T	T	C	rs9902252	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	8168224	8168224	T	C	SNP	PFAS	NM_012393	human	genbank	57_37b	+1	reviewed	silent	c.2061	p.S687	0.010	superfamily_PurM N-terminal domain-like	superfamily_PurS-like,superfamily_FGAM synthase PurL linker domain,superfamily_PurM N-terminal domain-like,HMMPfam_AIRS,superfamily_PurM C-terminal domain-like,HMMPfam_AIRS_C,superfamily_Class I glutamine amidotransferase-like	-		
PIK3R1	5295	genome.wustl.edu	37	5	67589627	67589627	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	67589627	67589627	G	A	SNP	PIK3R1	NM_181523	human	genbank	57_37b	+1	reviewed	missense	c.1390	p.D464N	1.000	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors	
PLCE1	51196	genome.wustl.edu	37	10	96025410	96025410	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	96025410	96025410	G	A	SNP	PLCE1	NM_016341	human	genbank	57_37b	+1	reviewed	missense	c.4060	p.E1354K	1.000	superfamily_EF-hand,HMMPfam_efhand_like	superfamily_Ras GEF,HMMSmart_SM00147,HMMPfam_RasGEF,superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMSmart_SM00149,HMMPfam_PI-PLC-Y,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_RA,HMMSmart_SM00314	-	no_errors	
RIMS1	22999	genome.wustl.edu	37	6	72678714	72678714	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	72678714	72678714	G	T	SNP	RIMS1	NM_014989	human	genbank	57_37b	+1	reviewed	missense	c.193	p.A65S	1.000	superfamily_FYVE/PHD zinc finger	superfamily_FYVE/PHD zinc finger,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors	
SBF1	6305	genome.wustl.edu	37	22	50898033	50898033	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50898033	50898033	C	T	SNP	SBF1	NM_002972	human	genbank	57_37b	-1	validated	missense	c.3554	p.R1185H	1.000	superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
SBF1	6305	genome.wustl.edu	37	22	50901009	50901009	+	Silent	SNP	C	C	T	rs5771037	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50901009	50901009	C	T	SNP	SBF1	NM_002972	human	genbank	57_37b	-1	validated	silent	c.2106	p.T702	0.000	NULL	HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_GRAM,HMMSmart_SM00568,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_Myotub-related,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II	-		
SCN10A	6336	genome.wustl.edu	37	3	38751020	38751020	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	38751020	38751020	C	A	SNP	SCN10A	NM_006514	human	genbank	57_37b	-1	validated	silent	c.4230	p.L1410	1.000	superfamily_SSF81324,HMMPfam_Ion_trans	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc	-	no_errors	
TBC1D22B	55633	genome.wustl.edu	37	6	37247157	37247157	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	37247157	37247157	G	A	SNP	TBC1D22B	NM_017772	human	genbank	57_37b	+1	validated	missense	c.191	p.R64Q	1.000	NULL	superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164	-	no_errors	
TIMD4	91937	genome.wustl.edu	37	5	156381720	156381720	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	156381720	156381720	C	T	SNP	TIMD4	NM_138379	human	genbank	57_37b	-1	validated	missense	c.106	p.V36M	0.698	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	-	no_errors	
TJP1	7082	genome.wustl.edu	37	15	30011144	30011144	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	30011144	30011144	C	T	SNP	TJP1	NM_003257	human	genbank	57_37b	-1	validated	missense	c.3202	p.D1068N	1.000	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SH3-domain,HMMPfam_SH3_2,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Guanylate_kin,HMMPfam_Gua_kin_assoc_C,HMMPfam_ZU5,HMMSmart_SM00218	-	no_errors	
TNFRSF6B	8771	genome.wustl.edu	37	20	62328432	62328432	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62328432	62328432	T	C	SNP	TNFRSF6B	NM_003823	human	genbank	57_37b	+1	reviewed	silent	c.312	p.A104	0.002	PatternScan_TNFR_NGFR_1,HMMPfam_TNFR_c6,HMMSmart_TNFR	HMMSmart_TNFR,superfamily_SSF57586,PatternScan_TNFR_NGFR_1,HMMPfam_TNFR_c6	-	no_errors	
TNIP2	79155	genome.wustl.edu	37	4	2744087	2744087	+	Missense_Mutation	SNP	G	G	A	rs2269495	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	2744087	2744087	G	A	SNP	TNIP2	NM_024309	human	genbank	57_37b	-1	validated	missense	c.1187	p.A396V	0.004	NULL	NULL	-		
TPO	7173	genome.wustl.edu	37	2	1544617	1544617	+	Missense_Mutation	SNP	G	G	A	rs12615819	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	1544617	1544617	G	A	SNP	TPO	ENST00000422464	human	ensembl	57_37b	+1	known	missense	c.2525	p.R842H	0.000	NULL	superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,PatternScan_PEROXIDASE_1,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-		
TRERF1	55809	genome.wustl.edu	37	6	42231239	42231244	+	In_Frame_Del	DEL	GGCGGA	GGCGGA	-	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	GGCGGA	GGCGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42231239	42231244	GGCGGA	-	DEL	TRERF1	NM_033502	human	genbank	57_37b	-1	reviewed	in_frame_del	c.1703_1698	p.PP569in_frame_del	0.993:0.994:0.991:0.993:0.994:0.994	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ELM2,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	(deletion:cds_exon[42231058,42231306])	no_errors	
TTC15	51112	genome.wustl.edu	37	2	3392075	3392075	+	Missense_Mutation	SNP	T	T	C	rs10865541	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	3392075	3392075	T	C	SNP	TTC15	ENST00000411973	human	ensembl	57_37b	+1	known	missense	c.178	p.Y60H	1.000	NULL	NULL	-		
TXNDC11	51061	genome.wustl.edu	37	16	11773412	11773412	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	11773412	11773412	C	T	SNP	TXNDC11	NM_015914	human	genbank	57_37b	-1	provisional	missense	c.2516	p.R839Q	0.012	NULL	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin	-	no_errors	
ZKSCAN2	342357	genome.wustl.edu	37	16	25264349	25264349	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	25264349	25264349	G	A	SNP	ZKSCAN2	NM_001012981	human	genbank	57_37b	-1	validated	missense	c.596	p.S199F	0.999	NULL	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF628	89887	genome.wustl.edu	37	19	55994708	55994708	+	Silent	SNP	A	A	G	rs114775834	by1000genomes	TCGA-AR-A0TQ-01A-11D-A099-09	TCGA-AR-A0TQ-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55994708	55994708	A	G	SNP	ZNF628	NM_033113	human	genbank	57_37b	+1	validated	silent	c.2136	p.Q712	0.842	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-		
