Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
C14orf102	55051	genome.wustl.edu	37	14	90754814	90754814	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	90754814	90754814	G	A	SNP	C14orf102	NM_017970	human	genbank	57_37b	-1	validated	silent	c.2905	p.L969	1.000	NULL	superfamily_Prenyl_trans,HMMPfam_DUF1740	-	no_errors	
CEP170	9859	genome.wustl.edu	37	1	243349521	243349521	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	243349521	243349521	C	G	SNP	CEP170	ENST00000321628	human	ensembl	57_37b	-1	known	missense	c.1216	p.D406H	1.000	NULL	superfamily_SMAD/FHA domain,HMMPfam_FHA	-	no_errors	
COL29A1	256076	genome.wustl.edu	37	3	130150403	130150403	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	130150403	130150403	C	G	SNP	COL29A1	NM_153264	human	genbank	57_37b	+1	validated	missense	c.5343	p.I1781M	0.907	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_Collagen	-	no_errors	
CYP1A1	1543	genome.wustl.edu	37	15	75015349	75015349	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	75015349	75015349	T	C	SNP	CYP1A1	NM_000499	human	genbank	57_37b	-1	reviewed	silent	c.90	p.R30	0.000	NULL	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors	
ENSG00000214896	0	genome.wustl.edu	37	15	53178012	53178012	+	Missense_Mutation	SNP	T	C	C	rs2414185	byCluster;by2Hit2Allele;byHapMap	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	53178012	53178012	T	C	SNP	ENSG00000214896	ENST00000399198	human	ensembl	57_37b	+1	known	missense	c.230	p.I77T	1.000	superfamily_Ribosomal_S2,HMMPfam_Ribosomal_S2	superfamily_Ribosomal_S2,HMMPfam_Ribosomal_S2,PatternScan_RIBOSOMAL_S2_2	-		
ENSG00000229429	0	genome.wustl.edu	37	7	99808811	99808811	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99808811	99808811	G	A	SNP	ENSG00000229429	ENST00000448005	human	ensembl	57_37b	-1	known	missense	c.133	p.H45Y	0.948	NULL	NULL	-	no_errors	
ENSG00000247765	0	genome.wustl.edu	37	15	21941688	21941688	+	RNA	SNP	G	G	A	rs4984119	byCluster;by2Hit2Allele	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	21941688	21941688	G	A	SNP	ENSG00000247765	ENST00000500487	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.000	-	-	-		
ERP29	10961	genome.wustl.edu	37	12	112460210	112460210	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	112460210	112460210	C	G	SNP	ERP29	NM_006817	human	genbank	57_37b	+1	reviewed	silent	c.540	p.L180	0.886	superfamily_ERP29_C,HMMPfam_ERp29	HMMPfam_ERp29_N,superfamily_Thiordxn-like_fd,superfamily_ERP29_C,HMMPfam_ERp29,PatternScan_ER_TARGET	-	no_errors	
GRIN2D	2906	genome.wustl.edu	37	19	48945508	48945508	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	48945508	48945508	G	A	SNP	GRIN2D	NM_000836	human	genbank	57_37b	+1	reviewed	missense	c.2542	p.V848I	1.000	HMMPfam_Lig_chan	superfamily_SSF53822,HMMPfam_ANF_receptor,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors	
LOC100291846	0	genome.wustl.edu	37	19	1238676	1238676	+	Missense_Mutation	SNP	C	C	G	rs2301758	byCluster;byFrequency;by1000genomes	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1238676	1238676	C	G	SNP	LOC100291846	XM_002345229	human	genbank	57_37b	+1	model	missense	c.961	p.Q321E	0.012	NULL	NULL	-		
LOC84931	84931	genome.wustl.edu	37	2	121222351	121222351	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	121222351	121222351	G	A	SNP	LOC84931	NR_027181	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors	
MEGF6	1953	genome.wustl.edu	37	1	3410644	3410644	+	Missense_Mutation	SNP	A	A	G	rs61742508	byCluster;byFrequency;by1000genomes	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	3410644	3410644	A	G	SNP	MEGF6	NM_001409	human	genbank	57_37b	-1	validated	missense	c.4174	p.W1392R	0.000	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMSmart_SM00180	HMMPfam_EMI,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMPfam_EGF_CA,HMMPfam_EGF_2,HMMSmart_SM00180,HMMPfam_Laminin_EGF,superfamily_Growth factor receptor domain	-		
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	A	G	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	G	G						Unknown	Unknown	Phase_IV	Capture			1	Illumina GAIIx	Illumina GAIIx	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1624	p.E542K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
RPGR	6103	genome.wustl.edu	37	X	38145632	38145646	+	In_Frame_Del	DEL	CTTCCTCCCCTTCTT	CTTCCTCCCCTTCTT	-	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	CTTCCTCCCCTTCTT	CTTCCTCCCCTTCTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	38145632	38145646	CTTCCTCCCCTTCTT	-	DEL	RPGR	NM_001034853	human	genbank	57_37b	-1	reviewed	in_frame_del	c.2620_2606	p.EEGEE869in_frame_del	0.002:0.000:0.000:0.001:0.001:0.002:0.004:0.002:0.000:0.001:0.005:0.072:0.086:0.106:0.097	NULL	superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1	(deletion:cds_exon[38144793,38146498])	no_errors	
SH2D3A	10045	genome.wustl.edu	37	19	6754155	6754155	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6754155	6754155	G	A	SNP	SH2D3A	NM_005490	human	genbank	57_37b	-1	validated	missense	c.1292	p.T431M	1.000	superfamily_Ras GEF,HMMSmart_SM00147	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Ras GEF,HMMSmart_SM00147	-	no_errors	
SLC24A1	9187	genome.wustl.edu	37	15	65918127	65918127	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	65918127	65918127	T	G	SNP	SLC24A1	NM_004727	human	genbank	57_37b	+1	validated	missense	c.1709	p.I570R	0.998	HMMPfam_Na_Ca_ex	HMMPfam_Na_Ca_ex	-	no_errors	
SOLH	6650	genome.wustl.edu	37	16	602313	602313	+	Silent	SNP	C	C	A	rs9930550	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	602313	602313	C	A	SNP	SOLH	NM_005632	human	genbank	57_37b	+1	reviewed	silent	c.2520	p.A840	0.000	NULL	superfamily_NZF domain,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,HMMPfam_zf-RanBP,superfamily_Cysteine proteinases,HMMSmart_SM00230,HMMPfam_Peptidase_C2,PatternScan_THIOL_PROTEASE_CYS	-		
