Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AMOT	154796	genome.wustl.edu	37	X	112065720	112065720	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	112065720	112065720	G	T	SNP	AMOT	NM_001113490	human	genbank	57_37b	-1	reviewed	missense	c.635	p.T212K	0.998	NULL	NULL	-	no_errors	
BAZ2B	29994	genome.wustl.edu	37	2	160181323	160181323	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	160181323	160181323	G	A	SNP	BAZ2B	NM_013450	human	genbank	57_37b	-1	validated	nonsense	c.6352	p.Q2118*	1.000	superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	superfamily_DNA-binding domain,HMMPfam_MBD,HMMSmart_SM00391,HMMPfam_DDT,HMMSmart_SM00571,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
BRF1	2972	genome.wustl.edu	37	14	105683986	105683986	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105683986	105683986	C	T	SNP	BRF1	NM_001519	human	genbank	57_37b	-1	reviewed	missense	c.1667	p.R556K	0.024	NULL	HMMPfam_TFIIB_Zn_Ribbon,superfamily_Zinc beta-ribbon,superfamily_Cyclin-like,HMMSmart_SM00385,HMMPfam_TFIIB,HMMPfam_BRF1	-	no_errors	
C16orf67	79014	genome.wustl.edu	37	16	31717354	31717354	+	RNA	SNP	T	T	C	rs1406178	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	31717354	31717354	T	C	SNP	C16orf67	NR_024034	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	1.000	-	-	-		
C1orf94	84970	genome.wustl.edu	37	1	34663500	34663500	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	34663500	34663500	G	A	SNP	C1orf94	NM_001134734	human	genbank	57_37b	+1	validated	missense	c.995	p.R332K	0.994	NULL	NULL	-	no_errors	
C2orf79	391356	genome.wustl.edu	37	2	25016138	25016138	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	25016138	25016138	G	T	SNP	C2orf79	NM_001013663	human	genbank	57_37b	-1	predicted	missense	c.109	p.Q37K	0.983	HMMPfam_PTH2,superfamily_SSF102462	HMMPfam_PTH2,superfamily_SSF102462	-	no_errors	
C6orf227	0	genome.wustl.edu	37	6	33560855	33560855	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	33560855	33560855	C	A	SNP	C6orf227	ENST00000356441	human	ensembl	57_37b	-1	known	missense	c.259	p.G87W	0.003	NULL	NULL	-	no_errors	
CALB2	794	genome.wustl.edu	37	16	71417313	71417313	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	71417313	71417313	A	T	SNP	CALB2	NM_001740	human	genbank	57_37b	+1	reviewed	missense	c.443	p.D148V	1.000	superfamily_SSF47473	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors	
CENPF	1063	genome.wustl.edu	37	1	214803928	214803928	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	214803928	214803928	C	A	SNP	CENPF	NM_016343	human	genbank	57_37b	+1	reviewed	missense	c.1246	p.Q416K	0.996	NULL	HMMPfam_Cenp-F_N,superfamily_Spectrin repeat,HMMPfam_Cenp-F_leu_zip,superfamily_Prefoldin,HMMPfam_Rb-bdg_C_Cenp-F	-	no_errors	
CLCN3	1182	genome.wustl.edu	37	4	170557240	170557240	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	170557240	170557240	G	T	SNP	CLCN3	NM_173872	human	genbank	57_37b	+1	validated	splice_site	c.160+1	e1+1	1.000	-	-	-	no_errors	
CLSTN2	64084	genome.wustl.edu	37	3	140122483	140122483	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	140122483	140122483	C	T	SNP	CLSTN2	NM_022131	human	genbank	57_37b	+1	validated	missense	c.245	p.A82V	0.981	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors	
CMTM7	112616	genome.wustl.edu	37	3	32490993	32490993	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	32490993	32490993	C	T	SNP	CMTM7	NM_138410	human	genbank	57_37b	+1	reviewed	silent	c.381	p.S127	1.000	HMMPfam_MARVEL	HMMPfam_MARVEL	-	no_errors	
COL6A6	131873	genome.wustl.edu	37	3	130300437	130300437	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	130300437	130300437	G	T	SNP	COL6A6	NM_001102608	human	genbank	57_37b	+1	provisional	missense	c.3580	p.V1194F	0.984	superfamily_vWA-like,HMMSmart_SM00327	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen	-	no_errors	
CTNNA3	29119	genome.wustl.edu	37	10	67726393	67726394	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	67726393	67726394	-	T	INS	CTNNA3	NM_001127384	human	genbank	57_37b	-1	validated	frame_shift_ins	c.2377_2376	p.G792fs	1.000:0.931	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	-	no_errors	
CTNNA3	29119	genome.wustl.edu	37	10	67726396	67726396	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	67726396	67726396	G	T	SNP	CTNNA3	NM_001127384	human	genbank	57_37b	-1	validated	missense	c.2374	p.L792M	0.999	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	-	no_errors	
DHRS2	10202	genome.wustl.edu	37	14	24113663	24113663	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24113663	24113663	A	G	SNP	DHRS2	NM_182908	human	genbank	57_37b	+1	validated	missense	c.586	p.T196A	0.999	superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT	superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT	-	no_errors	
DNAJB3	414061	genome.wustl.edu	37	2	234652278	234652278	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	234652278	234652278	G	T	SNP	DNAJB3	NM_001001394	human	genbank	57_37b	-1	validated	missense	c.285	p.D95E	1.000	superfamily_DnaJ_N	superfamily_DnaJ_N,HMMSmart_DnaJ,HMMPfam_DnaJ,PatternScan_DNAJ_1	-	no_errors	
ENO3	2027	genome.wustl.edu	37	17	4857133	4857133	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4857133	4857133	C	T	SNP	ENO3	NM_001976	human	genbank	57_37b	+1	reviewed	missense	c.437	p.P146L	1.000	superfamily_Enolase C-terminal domain-like,HMMPfam_Enolase_C	HMMPfam_Enolase_N,superfamily_Enolase N-terminal domain-like,superfamily_Enolase C-terminal domain-like,HMMPfam_Enolase_C,PatternScan_ENOLASE	-	no_errors	
ENSG00000181950	0	genome.wustl.edu	37	11	55234806	55234806	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55234806	55234806	G	A	SNP	ENSG00000181950	ENST00000314689	human	ensembl	57_37b	+1	known	missense	c.275	p.C92Y	0.998	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
EVPL	2125	genome.wustl.edu	37	17	74017827	74017827	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	74017827	74017827	C	A	SNP	EVPL	NM_001988	human	genbank	57_37b	-1	validated	missense	c.843	p.Q281H	0.890	HMMSmart_SM00150,superfamily_Spectrin repeat	superfamily_Spectrin repeat,HMMSmart_SM00150,HMMSmart_SM00250,superfamily_Prefoldin,superfamily_Plakin repeat,HMMPfam_Plectin	-	no_errors	
FER1L5	90342	genome.wustl.edu	37	2	97338872	97338872	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	97338872	97338872	T	G	SNP	FER1L5	NM_001113382	human	genbank	57_37b	+1	provisional	missense	c.1535	p.M512R	1.000	NULL	HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerI,HMMPfam_FerB,HMMSmart_SM00693,HMMSmart_SM00694	-	no_errors	
FLG	2312	genome.wustl.edu	37	1	152286025	152286025	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152286025	152286025	C	G	SNP	FLG	NM_002016	human	genbank	57_37b	-1	reviewed	missense	c.1337	p.R446T	0.000	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin	-	no_errors	
FSHR	2492	genome.wustl.edu	37	2	49190072	49190072	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	49190072	49190072	T	C	SNP	FSHR	NM_000145	human	genbank	57_37b	-1	reviewed	missense	c.1888	p.T630A	1.000	superfamily_Family A G protein-coupled receptor-like	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
GNPAT	8443	genome.wustl.edu	37	1	231403518	231403518	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	231403518	231403518	T	G	SNP	GNPAT	NM_014236	human	genbank	57_37b	+1	reviewed	missense	c.1148	p.L383W	1.000	NULL	HMMPfam_Acyltransferase,superfamily_SSF69593,HMMSmart_PlsC	-	no_errors	
HDX	139324	genome.wustl.edu	37	X	83581199	83581199	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	83581199	83581199	T	G	SNP	HDX	NM_144657	human	genbank	57_37b	-1	provisional	missense	c.1934	p.K645T	1.000	NULL	HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox	-	no_errors	
ITGA10	8515	genome.wustl.edu	37	1	145530929	145530929	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	145530929	145530929	G	A	SNP	ITGA10	NM_003637	human	genbank	57_37b	+1	reviewed	missense	c.661	p.D221N	1.000	superfamily_Integrin alpha N-terminal domain,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains	-	no_errors	
ITIH4	3700	genome.wustl.edu	37	3	52860882	52860882	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52860882	52860882	C	A	SNP	ITIH4	NM_002218	human	genbank	57_37b	-1	reviewed	missense	c.444	p.E148D	1.000	HMMSmart_SM00609,HMMPfam_VIT	HMMSmart_SM00609,HMMPfam_VIT,HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_ITI_HC_C	-	no_errors	
KIAA0226	9711	genome.wustl.edu	37	3	197444928	197444928	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	197444928	197444928	C	T	SNP	KIAA0226	NM_014687	human	genbank	57_37b	-1	predicted	missense	c.139	p.V47I	1.000	NULL	HMMSmart_SM00593	-	no_errors	
KLRF1	51348	genome.wustl.edu	37	12	9985925	9985925	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	9985925	9985925	C	T	SNP	KLRF1	NM_016523	human	genbank	57_37b	+1	provisional	nonsense	c.211	p.Q71*	0.681	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	-	no_errors	
KNG1	3827	genome.wustl.edu	37	3	186450435	186450435	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	186450435	186450435	T	C	SNP	KNG1	NM_001102416	human	genbank	57_37b	+1	reviewed	missense	c.902	p.I301T	1.000	HMMSmart_SM00043,HMMPfam_Cystatin,superfamily_Cystatin/monellin	HMMSmart_SM00043,HMMPfam_Cystatin,superfamily_Cystatin/monellin,PatternScan_CYSTATIN	-	no_errors	
LHX4	89884	genome.wustl.edu	37	1	180243387	180243387	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	180243387	180243387	C	T	SNP	LHX4	NM_033343	human	genbank	57_37b	+1	reviewed	silent	c.846	p.G282	1.000	NULL	superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
LOC285830	285830	genome.wustl.edu	37	6	29694570	29694570	+	RNA	SNP	A	A	G	rs3734813	byCluster;byFrequency;by2Hit2Allele	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	29694570	29694570	A	G	SNP	LOC285830	NR_026972	human	genbank	57_37b	-1	validated	rna	NULL	NULL	1.000	-	-	-		
LOC390424	390424	genome.wustl.edu	37	13	107316046	107316046	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	107316046	107316046	A	T	SNP	LOC390424	XM_002344086	human	genbank	57_37b	+1	model	nonsense	c.262	p.K88*	1.000	superfamily_F1F0 ATP synthase subunit C,HMMPfam_ATP-synt_C	superfamily_F1F0 ATP synthase subunit C,HMMPfam_ATP-synt_C	-	no_errors	
LOC643677	643677	genome.wustl.edu	37	13	103396384	103396384	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	103396384	103396384	A	-	DEL	LOC643677	XM_002344085	human	genbank	57_37b	-1	model	frame_shift_del	c.6450	p.I2150fs	0.001	NULL	NULL	(deletion:cds_exon[103390021,103402721])	no_errors	
LRRK2	120892	genome.wustl.edu	37	12	40745430	40745430	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	40745430	40745430	T	G	SNP	LRRK2	NM_198578	human	genbank	57_37b	+1	reviewed	silent	c.6471	p.A2157	0.137	superfamily_WD40_like	superfamily_ARM-type_fold,superfamily_SSF52058,HMMPfam_LRR_1,superfamily_SSF52540,HMMPfam_Miro,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,superfamily_WD40_like,HMMSmart_WD40,PatternScan_RCC1_2	-	no_errors	
LRSAM1	90678	genome.wustl.edu	37	9	130263396	130263396	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	130263396	130263396	G	C	SNP	LRSAM1	NM_001005373	human	genbank	57_37b	+1	validated	missense	c.2020	p.E674Q	0.789	superfamily_RING/U-box	superfamily_L domain-like,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,superfamily_RING/U-box	-	no_errors	
MDGA2	161357	genome.wustl.edu	37	14	47324336	47324336	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	47324336	47324336	C	T	SNP	MDGA2	NM_001113498	human	genbank	57_37b	-1	validated	missense	c.2567	p.R856H	1.000	HMMSmart_MAM,HMMPfam_MAM	PatternScan_MAM_1,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_IG,HMMPfam_I-set,superfamily_FN_III-like,HMMSmart_MAM,HMMPfam_MAM	-	no_errors	
MIR1185-1	0	genome.wustl.edu	37	14	101509363	101509363	+	RNA	SNP	C	C	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	101509363	101509363	C	T	SNP	MIR1185-1	ENST00000408598	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.211	-	-	-	no_errors	
MYO1F	4542	genome.wustl.edu	37	19	8601262	8601262	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	8601262	8601262	G	A	SNP	MYO1F	NM_012335	human	genbank	57_37b	-1	provisional	silent	c.1917	p.P639	0.153	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMPfam_Myosin_TH1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
NPR3	4883	genome.wustl.edu	37	5	32724819	32724819	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	32724819	32724819	C	T	SNP	NPR3	NM_000908	human	genbank	57_37b	+1	validated	missense	c.785	p.A262V	1.000	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_ANF_RECEPTORS	-	no_errors	
OR14K1	343170	genome.wustl.edu	37	1	247902857	247902857	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247902857	247902857	G	C	SNP	OR14K1	ENST00000283225	human	ensembl	57_37b	+1	known	missense	c.941	p.R314T	0.022	NULL	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR5D18	219438	genome.wustl.edu	37	11	55587494	55587494	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55587494	55587494	C	T	SNP	OR5D18	NM_001001952	human	genbank	57_37b	+1	provisional	missense	c.389	p.P130L	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR5K2	402135	genome.wustl.edu	37	3	98217028	98217028	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	98217028	98217028	C	T	SNP	OR5K2	NM_001004737	human	genbank	57_37b	+1	provisional	silent	c.504	p.F168	0.994	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PCDHA13	56136	genome.wustl.edu	37	5	140263908	140263908	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140263908	140263908	C	T	SNP	PCDHA13	NM_018904	human	genbank	57_37b	+1	reviewed	silent	c.2055	p.G685	0.000	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PPL	5493	genome.wustl.edu	37	16	4947726	4947726	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	4947726	4947726	G	A	SNP	PPL	NM_002705	human	genbank	57_37b	-1	reviewed	silent	c.922	p.L308	1.000	HMMSmart_SM00150,superfamily_Spectrin repeat	HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	-	no_errors	
PTPRZ1	5803	genome.wustl.edu	37	7	121624110	121624110	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	121624110	121624110	G	A	SNP	PTPRZ1	NM_002851	human	genbank	57_37b	+1	reviewed	silent	c.867	p.Q289	1.000	superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase	superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
RPRD2	23248	genome.wustl.edu	37	1	150430016	150430016	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150430016	150430016	G	T	SNP	RPRD2	NM_015203	human	genbank	57_37b	+1	validated	missense	c.1123	p.D375Y	1.000	NULL	superfamily_ENTH/VHS domain,HMMSmart_SM00582,HMMPfam_DUF618	-	no_errors	
RRAGB	10325	genome.wustl.edu	37	X	55757917	55757917	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	55757917	55757917	T	-	DEL	RRAGB	NM_016656	human	genbank	57_37b	+1	validated	frame_shift_del	c.498	p.Y167fs	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Gtr1_RagA	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Gtr1_RagA	(deletion:cds_exon[55757797,55758019])	no_errors	
RTN2	6253	genome.wustl.edu	37	19	45991899	45991899	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	45991899	45991899	A	T	SNP	RTN2	NM_005619	human	genbank	57_37b	-1	reviewed	silent	c.1446	p.I482	0.970	HMMPfam_Reticulon	HMMPfam_Reticulon	-	no_errors	
SLC22A16	85413	genome.wustl.edu	37	6	110778014	110778014	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	110778014	110778014	G	A	SNP	SLC22A16	NM_033125	human	genbank	57_37b	-1	provisional	missense	c.260	p.T87M	0.000	NULL	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	-	no_errors	
SNRNP48	154007	genome.wustl.edu	37	6	7609080	7609080	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	7609080	7609080	C	T	SNP	SNRNP48	NM_152551	human	genbank	57_37b	+1	validated	missense	c.994	p.H332Y	1.000	NULL	NULL	-	no_errors	
SSX5	6758	genome.wustl.edu	37	X	48049613	48049613	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48049613	48049613	G	T	SNP	SSX5	NM_021015	human	genbank	57_37b	-1	reviewed	missense	c.545	p.P182H	0.000	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349,HMMPfam_KRAB,HMMPfam_SSXRD	-	no_errors	
TAX1BP1	8887	genome.wustl.edu	37	7	27833979	27833979	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	27833979	27833979	A	T	SNP	TAX1BP1	NM_006024	human	genbank	57_37b	+1	validated	missense	c.1448	p.N483I	0.869	HMMPfam_CALCOCO1	HMMPfam_CALCOCO1	-	no_errors	
TDRD9	122402	genome.wustl.edu	37	14	104484481	104484481	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	104484481	104484481	T	C	SNP	TDRD9	NM_153046	human	genbank	57_37b	+1	validated	missense	c.2384	p.L795P	1.000	NULL	HMMSmart_SM00487,HMMPfam_DEAD,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333	-	no_errors	
TFE3	7030	genome.wustl.edu	37	X	48887874	48887874	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48887874	48887874	T	A	SNP	TFE3	NM_006521	human	genbank	57_37b	-1	reviewed	missense	c.1523	p.D508V	1.000	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-	no_errors	
TINAG	27283	genome.wustl.edu	37	6	54254622	54254622	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	54254622	54254622	G	T	SNP	TINAG	NM_014464	human	genbank	57_37b	+1	validated	nonsense	c.1330	p.E444*	1.000	superfamily_Cysteine proteinases,HMMSmart_SM00645,HMMPfam_Peptidase_C1,PatternScan_THIOL_PROTEASE_ASN	HMMSmart_SM00201,PatternScan_SMB_1,superfamily_Cysteine proteinases,HMMSmart_SM00645,HMMPfam_Peptidase_C1,PatternScan_THIOL_PROTEASE_ASN	-	no_errors	
TNNT1	7138	genome.wustl.edu	37	19	55648534	55648534	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55648534	55648534	A	C	SNP	TNNT1	NM_003283	human	genbank	57_37b	-1	reviewed	missense	c.548	p.V183G	0.385	HMMPfam_Troponin	HMMPfam_Troponin	-	no_errors	
TTC31	64427	genome.wustl.edu	37	2	74719297	74719297	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	74719297	74719297	C	G	SNP	TTC31	NM_022492	human	genbank	57_37b	+1	validated	missense	c.960	p.F320L	0.994	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors	
TTYH1	57348	genome.wustl.edu	37	19	54937907	54937907	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	54937907	54937907	C	T	SNP	TTYH1	NM_001005367	human	genbank	57_37b	+1	reviewed	silent	c.696	p.L232	1.000	HMMPfam_Tweety	HMMPfam_Tweety	-	no_errors	
UCK2	7371	genome.wustl.edu	37	1	165875164	165875164	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	165875164	165875164	A	T	SNP	UCK2	NM_012474	human	genbank	57_37b	+1	reviewed	nonsense	c.604	p.K202*	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_PRK	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_PRK	-	no_errors	
ZFAND2B	130617	genome.wustl.edu	37	2	220072393	220072393	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	220072393	220072393	T	C	SNP	ZFAND2B	NM_138802	human	genbank	57_37b	+1	provisional	silent	c.174	p.P58	0.012	NULL	HMMSmart_SM00154,HMMPfam_zf-AN1,HMMPfam_UIM,HMMSmart_SM00726	-	no_errors	
ZNF415	55786	genome.wustl.edu	37	19	53612856	53612856	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AR-01A-31D-A135-09	TCGA-AR-A1AR-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53612856	53612856	G	A	SNP	ZNF415	NM_018355	human	genbank	57_37b	-1	validated	missense	c.442	p.H148Y	0.000	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
