Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ATP10B	23120	genome.wustl.edu	37	5	160097495	160097495	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	160097495	160097495	C	T	SNP	ATP10B	NM_025153	human	genbank	57_37b	-1	validated	missense	c.650	p.C217Y	0.712	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Hydrolase_3	-	no_errors	
ATXN1	6310	genome.wustl.edu	37	6	16327912	16327912	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	16327912	16327912	C	A	SNP	ATXN1	NM_000332	human	genbank	57_37b	-1	reviewed	missense	c.630	p.Q210H	0.022	NULL	superfamily_AXH domain,HMMSmart_SM00536,HMMPfam_AXH	-	no_errors	
BCL11A	53335	genome.wustl.edu	37	2	60687616	60687616	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	60687616	60687616	C	T	SNP	BCL11A	NM_022893	human	genbank	57_37b	-1	reviewed	missense	c.2431	p.V811M	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors	
C10orf125	282969	genome.wustl.edu	37	10	135170746	135170746	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	135170746	135170746	C	T	SNP	C10orf125	NM_001098483	human	genbank	57_37b	-1	validated	silent	c.99	p.L33	0.275	superfamily_Ribose transport protein RbsD,HMMPfam_RbsD_FucU	superfamily_Ribose transport protein RbsD,HMMPfam_RbsD_FucU	-	no_errors	
C1orf111	284680	genome.wustl.edu	37	1	162343895	162343895	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	162343895	162343895	G	A	SNP	C1orf111	ENST00000367933	human	ensembl	57_37b	-1	known	nonsense	c.724	p.Q242*	1.000	NULL	NULL	-	no_errors	
CARD14	79092	genome.wustl.edu	37	17	78156478	78156478	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	78156478	78156478	C	T	SNP	CARD14	NM_024110	human	genbank	57_37b	+1	reviewed	nonsense	c.238	p.R80*	0.999	superfamily_DEATH domain,HMMPfam_CARD	superfamily_DEATH domain,HMMPfam_CARD,superfamily_PDZ domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
CNGA4	1262	genome.wustl.edu	37	11	6261794	6261794	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6261794	6261794	G	A	SNP	CNGA4	NM_001037329	human	genbank	57_37b	+1	validated	missense	c.770	p.G257D	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2	-	no_errors	
COL6A3	1293	genome.wustl.edu	37	2	238243265	238243270	+	Splice_Site	DEL	TTACTT	TTACTT	-	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	TTACTT	TTACTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	238243265	238243270	TTACTT	-	DEL	COL6A3	NM_004369	human	genbank	57_37b	-1	reviewed	splice_site_del	c.9229+3_9229+1	e41-1	1.000:0.992:1.000:1.000:0.998:0.997	-	-	(deletion:intron[238242192,238243268], cds_exon[238243269,238243532])	no_errors	
DPH1	1801	genome.wustl.edu	37	17	1940232	1940232	+	Missense_Mutation	SNP	A	A	G	rs1131600	byCluster;byFrequency;by1000genomes	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	1940232	1940232	A	G	SNP	DPH1	NM_001383	human	genbank	57_37b	+1	validated	missense	c.677	p.K226R	0.945	HMMPfam_Diphthamide_syn	HMMPfam_Diphthamide_syn	-		
EIF4A3	9775	genome.wustl.edu	37	17	78110120	78110120	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	78110120	78110120	G	C	SNP	EIF4A3	NM_014740	human	genbank	57_37b	-1	reviewed	missense	c.998	p.S333C	0.890	superfamily_SSF52540,HMMSmart_HELICc,HMMPfam_Helicase_C	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C	-	no_errors	
ENSG00000210195	0	genome.wustl.edu	37	MT	15904	15904	+	RNA	SNP	C	T	T	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	MT	15904	15904	C	T	SNP	ENSG00000210195	ENST00000387460	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors	
EPHB6	2051	genome.wustl.edu	37	7	142568630	142568630	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	142568630	142568630	G	A	SNP	EPHB6	NM_004445	human	genbank	57_37b	+1	reviewed	silent	c.3039	p.L1013	1.000	superfamily_SAM/Pointed domain	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00454,HMMPfam_SAM_2,superfamily_SAM/Pointed domain	-	no_errors	
ESPL1	9700	genome.wustl.edu	37	12	53680029	53680029	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53680029	53680029	T	G	SNP	ESPL1	NM_012291	human	genbank	57_37b	+1	validated	missense	c.3509	p.V1170G	0.113	NULL	HMMPfam_Peptidase_C50	-	no_errors	
EYA2	2139	genome.wustl.edu	37	20	45801427	45801427	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	45801427	45801427	G	A	SNP	EYA2	NM_005244	human	genbank	57_37b	+1	reviewed	silent	c.1110	p.V370	0.330	HMMPfam_Hydrolase	HMMPfam_Hydrolase	-	no_errors	
GATA3	2625	genome.wustl.edu	37	10	8100440	8100440	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8100440	8100440	C	G	SNP	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	silent	c.414	p.S138	0.884	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors	
GIMAP4	55303	genome.wustl.edu	37	7	150269546	150269546	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150269546	150269546	G	A	SNP	GIMAP4	NM_018326	human	genbank	57_37b	+1	reviewed	missense	c.388	p.E130K	1.000	superfamily_SSF52540,HMMPfam_AIG1	superfamily_SSF52540,HMMPfam_AIG1	-	no_errors	
GLRX2	51022	genome.wustl.edu	37	1	193065756	193065756	+	Nonstop_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	193065756	193065756	C	G	SNP	GLRX2	NM_016066	human	genbank	57_37b	-1	validated	nonstop	c.497	p.*166S	0.093	NULL	superfamily_Thiordxn-like_fd,HMMPfam_Glutaredoxin	-	no_errors	
GOLPH3	64083	genome.wustl.edu	37	5	32143957	32143957	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	32143957	32143957	T	C	SNP	GOLPH3	NM_022130	human	genbank	57_37b	-1	reviewed	missense	c.255	p.I85M	1.000	HMMPfam_GPP34	HMMPfam_GPP34	-	no_errors	
HMGN5	79366	genome.wustl.edu	37	X	80370668	80370668	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	80370668	80370668	T	G	SNP	HMGN5	NM_030763	human	genbank	57_37b	-1	reviewed	missense	c.329	p.E110A	0.045	NULL	HMMPfam_HMG14_17,HMMSmart_SM00527,PatternScan_HMG14_17	-	no_errors	
IRAK3	11213	genome.wustl.edu	37	12	66638269	66638269	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	66638269	66638269	A	C	SNP	IRAK3	NM_007199	human	genbank	57_37b	+1	validated	silent	c.891	p.A297	0.997	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220	-	no_errors	
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	25398284	25398284	C	A	SNP	KRAS	NM_033360	human	genbank	57_37b	-1	reviewed	missense	c.35	p.G12V	1.000	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	-	no_errors	
LARP6	55323	genome.wustl.edu	37	15	71128708	71128708	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	71128708	71128708	C	T	SNP	LARP6	NM_018357	human	genbank	57_37b	-1	validated	missense	c.337	p.A113T	1.000	superfamily_SSF46785,HMMSmart_LA,HMMPfam_La	superfamily_SSF46785,HMMSmart_LA,HMMPfam_La	-	no_errors	
LCAT	3931	genome.wustl.edu	37	16	67977911	67977911	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67977911	67977911	A	T	SNP	LCAT	NM_000229	human	genbank	57_37b	-1	reviewed	missense	c.94	p.F32I	1.000	superfamily_alpha/beta-Hydrolases	superfamily_alpha/beta-Hydrolases,HMMPfam_LACT,PatternScan_LIPASE_SER	-	no_errors	
LOC100287678	0	genome.wustl.edu	37	11	62572858	62572858	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62572858	62572858	G	A	SNP	LOC100287678	XM_002343090	human	genbank	57_37b	+1	model	missense	c.664	p.A222T	0.001	NULL	NULL	-	no_errors	
LOC729806	729806	genome.wustl.edu	37	1	247353721	247353721	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247353721	247353721	T	-	DEL	LOC729806	XM_002342180	human	genbank	57_37b	-1	model	frame_shift_del	c.1311	p.K437fs	0.079	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[247353280,247354322])	no_errors	
LRFN5	145581	genome.wustl.edu	37	14	42360996	42360996	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	42360996	42360996	G	A	SNP	LRFN5	NM_152447	human	genbank	57_37b	+1	validated	silent	c.1929	p.Q643	1.000	NULL	HMMSmart_LRRNT,superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_fn3,superfamily_FN_III-like	-	no_errors	
MAP2K4	6416	genome.wustl.edu	37	17	12016634	12016634	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	12016634	12016634	C	T	SNP	MAP2K4	NM_003010	human	genbank	57_37b	+1	reviewed	missense	c.770	p.S257F	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MAPK4	5596	genome.wustl.edu	37	18	48255652	48255652	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	48255652	48255652	C	T	SNP	MAPK4	NM_002747	human	genbank	57_37b	+1	reviewed	missense	c.1192	p.R398C	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MST1P9	0	genome.wustl.edu	37	1	17083837	17083837	+	Missense_Mutation	SNP	T	T	C	rs71269412	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17083837	17083837	T	C	SNP	MST1P9	ENST00000455405	human	ensembl	57_37b	-1	known	missense	c.2038	p.K680E	1.000	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	HMMPfam_PAN_1,superfamily_Hairpin loop containing domain-like,HMMSmart_SM00473,HMMSmart_SM00130,HMMPfam_Kringle,superfamily_Kringle-like,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	-		
MUC15	143662	genome.wustl.edu	37	11	26582735	26582735	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	26582735	26582735	C	T	SNP	MUC15	NM_001135091	human	genbank	57_37b	-1	validated	silent	c.963	p.V321	0.113	NULL	NULL	-	no_errors	
MYOF	26509	genome.wustl.edu	37	10	95137179	95137182	+	Frame_Shift_Del	DEL	TTTG	TTTG	-	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	TTTG	TTTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	95137179	95137182	TTTG	-	DEL	MYOF	NM_013451	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.2009_2006	p.T669fs	0.987:0.989:0.900:0.996	NULL	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerA,HMMPfam_FerB,HMMSmart_SM00693,HMMSmart_SM00694	(deletion:cds_exon[95137080,95137186])	no_errors	
PCDHA4	56144	genome.wustl.edu	37	5	140187112	140187112	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140187112	140187112	C	T	SNP	PCDHA4	NM_018907	human	genbank	57_37b	+1	reviewed	silent	c.340	p.L114	1.000	superfamily_Cadherin-like,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936092	178936092	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936092	178936092	A	C	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1634	p.E545A	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PLEKHG1	57480	genome.wustl.edu	37	6	151152257	151152257	+	Silent	SNP	A	A	G	rs926624	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	151152257	151152257	A	G	SNP	PLEKHG1	NM_001029884	human	genbank	57_37b	+1	provisional	silent	c.2010	p.K670	0.104	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-		
PLXNA4	91584	genome.wustl.edu	37	7	131848926	131848926	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	131848926	131848926	C	T	SNP	PLXNA4	NM_020911	human	genbank	57_37b	-1	validated	missense	c.4475	p.R1492H	1.000	HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP	-	no_errors	
POTEG	0	genome.wustl.edu	37	14	19553451	19553451	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	19553451	19553451	C	T	SNP	POTEG	NM_001005356	human	genbank	57_37b	+1	validated	missense	c.35	p.S12F	0.001	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248	-	no_errors	
RBM6	10180	genome.wustl.edu	37	3	50095901	50095901	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	50095901	50095901	A	G	SNP	RBM6	NM_005777	human	genbank	57_37b	+1	validated	missense	c.2036	p.Y679C	0.997	superfamily_SSF54928	superfamily_SSF54928,HMMSmart_RRM,HMMSmart_ZnF_C2H2,HMMSmart_G_patch,HMMPfam_G-patch	-	no_errors	
RYR2	6262	genome.wustl.edu	37	1	237632461	237632461	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	237632461	237632461	G	T	SNP	RYR2	NM_001035	human	genbank	57_37b	+1	reviewed	missense	c.1682	p.R561I	1.000	HMMPfam_RYDR_ITPR	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors	
SLC6A9	6536	genome.wustl.edu	37	1	44468079	44468079	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	44468079	44468079	C	A	SNP	SLC6A9	NM_201649	human	genbank	57_37b	-1	validated	missense	c.1087	p.D363Y	1.000	HMMPfam_SNF	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors	
SPRR2B	6701	genome.wustl.edu	37	1	153043220	153043220	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	153043220	153043220	G	T	SNP	SPRR2B	NM_001017418	human	genbank	57_37b	-1	provisional	nonsense	c.96	p.C32*	0.151	NULL	NULL	-	no_errors	
SPTA1	6708	genome.wustl.edu	37	1	158605731	158605733	+	In_Frame_Del	DEL	CCC	CCC	-	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	CCC	CCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158605731	158605733	CCC	-	DEL	SPTA1	NM_003126	human	genbank	57_37b	-1	reviewed	in_frame_del	c.5404_5402	p.WEKLK1801in_frame_del*	1.000:1.000:1.000	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_EF-hand,HMMPfam_efhand_Ca_insen	(deletion:cds_exon[158605703,158605824])	no_errors	
SPTA1	6708	genome.wustl.edu	37	1	158605735	158605743	+	In_Frame_Del	DEL	GTGTTCAAC	GTGTTCAAC	-	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	GTGTTCAAC	GTGTTCAAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158605735	158605743	GTGTTCAAC	-	DEL	SPTA1	NM_003126	human	genbank	57_37b	-1	reviewed	in_frame_del	c.5400_5392	p.VEH1798in_frame_del	0.996:1.000:1.000:0.952:0.953:0.676:0.665:0.999:1.000	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Spectrin,HMMPfam_efhand_Ca_insen,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand	(deletion:cds_exon[158605703,158605824])	no_errors	
TOMM40	10452	genome.wustl.edu	37	19	45406420	45406420	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	45406420	45406420	C	T	SNP	TOMM40	NM_001128916	human	genbank	57_37b	+1	validated	silent	c.1080	p.I360	0.916	NULL	HMMPfam_Porin_3	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578406	7578406	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.524	p.R175H	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-		
TTN	7273	genome.wustl.edu	37	2	179427821	179427821	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179427821	179427821	C	T	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.75328	p.D25110N	1.000	HMMPfam_I-set,HMMSmart_SM00409	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
TXNDC2	84203	genome.wustl.edu	37	18	9887689	9887689	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	9887689	9887689	C	T	SNP	TXNDC2	NM_001098529	human	genbank	57_37b	+1	validated	missense	c.1213	p.P405S	0.000	NULL	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin	-	no_errors	
WDR8	49856	genome.wustl.edu	37	1	3566551	3566551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	3566551	3566551	C	T	SNP	WDR8	NM_017818	human	genbank	57_37b	-1	reviewed	missense	c.13	p.E5K	1.000	NULL	superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
ZAR1	326340	genome.wustl.edu	37	4	48492353	48492353	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	48492353	48492353	G	A	SNP	ZAR1	NM_175619	human	genbank	57_37b	+1	provisional	silent	c.45	p.P15	0.059	NULL	NULL	-	no_errors	
ZC3H11A	9877	genome.wustl.edu	37	1	203819082	203819082	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AS-01A-11D-A12Q-09	TCGA-AR-A1AS-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	203819082	203819082	G	A	SNP	ZC3H11A	NM_014827	human	genbank	57_37b	+1	validated	missense	c.1867	p.E623K	0.989	NULL	HMMSmart_ZnF_C3H1	-	no_errors	
