Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AADAC	13	genome.wustl.edu	37	3	151532014	151532014	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	151532014	151532014	C	T	SNP	AADAC	NM_001086	human	genbank	57_37b	+1	reviewed	missense	c.64	p.P22S	0.714	NULL	superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_3,PatternScan_LIPASE_GDXG_SER	-	no_errors	
ABCD3	5825	genome.wustl.edu	37	1	94953135	94953135	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	94953135	94953135	C	T	SNP	ABCD3	NM_002858	human	genbank	57_37b	+1	reviewed	missense	c.935	p.S312L	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane_2	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane_2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ACSS1	84532	genome.wustl.edu	37	20	24994289	24994289	+	Missense_Mutation	SNP	C	C	T	rs6050249	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	24994289	24994289	C	T	SNP	ACSS1	NM_032501	human	genbank	57_37b	-1	reviewed	missense	c.1462	p.V488M	0.000	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-		
AFF1	4299	genome.wustl.edu	37	4	88052306	88052307	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	88052306	88052307	AG	-	DEL	AFF1	NM_005935	human	genbank	57_37b	+1	validated	frame_shift_del	c.3015_3016	p.E1006fs	0.857:1.000	HMMPfam_AF-4	HMMPfam_AF-4	(deletion:cds_exon[88052235,88052371])	no_errors	
AFP	174	genome.wustl.edu	37	4	74319576	74319576	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	74319576	74319576	T	A	SNP	AFP	NM_001134	human	genbank	57_37b	+1	reviewed	missense	c.1747	p.C583S	1.000	HMMSmart_ALBUMIN,HMMPfam_Serum_albumin,superfamily_Serum_albumin,PatternScan_ALBUMIN	HMMSmart_ALBUMIN,HMMPfam_Serum_albumin,superfamily_Serum_albumin,PatternScan_ALBUMIN	-	no_errors	
ARSF	416	genome.wustl.edu	37	X	3019142	3019142	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	3019142	3019142	G	A	SNP	ARSF	NM_004042	human	genbank	57_37b	+1	reviewed	missense	c.982	p.A328T	0.007	superfamily_Alkaline phosphatase-like,HMMPfam_Sulfatase	superfamily_Alkaline phosphatase-like,HMMPfam_Sulfatase,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2	-	no_errors	
ATP2B1	490	genome.wustl.edu	37	12	90024403	90024403	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	90024403	90024403	G	A	SNP	ATP2B1	NM_001682	human	genbank	57_37b	-1	reviewed	silent	c.807	p.G269	1.000	superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653	HMMPfam_Cation_ATPase_N,superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Cation_ATPase_C	-	no_errors	
B3GALT5	10317	genome.wustl.edu	37	21	41032610	41032610	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	41032610	41032610	G	C	SNP	B3GALT5	NM_006057	human	genbank	57_37b	+1	reviewed	missense	c.124	p.G42R	0.011	NULL	HMMPfam_Galactosyl_T	-	no_errors	
BAGE2	85319	genome.wustl.edu	37	21	11098693	11098693	+	Missense_Mutation	SNP	G	G	A	rs74517585	byFrequency	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	11098693	11098693	G	A	SNP	BAGE2	ENST00000356832	human	ensembl	57_37b	-1	known	missense	c.5	p.A2V	0.016	HMMPfam_BAGE	HMMPfam_BAGE	-		
BRPF3	27154	genome.wustl.edu	37	6	36178029	36178029	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	36178029	36178029	G	A	SNP	BRPF3	NM_015695	human	genbank	57_37b	+1	validated	missense	c.1903	p.D635N	1.000	superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	HMMPfam_EPL1,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1,superfamily_SSF63748,HMMPfam_PWWP,HMMSmart_PWWP	-	no_errors	
BSN	8927	genome.wustl.edu	37	3	49690496	49690496	+	Silent	SNP	C	C	T	rs11709525	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49690496	49690496	C	T	SNP	BSN	NM_003458	human	genbank	57_37b	+1	reviewed	silent	c.3507	p.S1169	0.000	NULL	HMMPfam_zf-piccolo,superfamily_FYVE_PHD_ZnF	-		
C19orf71	0	genome.wustl.edu	37	19	3543315	3543315	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3543315	3543315	C	T	SNP	C19orf71	NM_001135580	human	genbank	57_37b	+1	validated	missense	c.166	p.R56W	0.000	NULL	NULL	-	no_errors	
C6orf170	221322	genome.wustl.edu	37	6	121615779	121615779	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	121615779	121615779	G	A	SNP	C6orf170	NM_152730	human	genbank	57_37b	-1	validated	nonsense	c.1168	p.Q390*	1.000	NULL	superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors	
C9orf144B	0	genome.wustl.edu	37	9	34724646	34724646	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	34724646	34724646	C	-	DEL	C9orf144B	NM_001141917	human	genbank	57_37b	-1	validated	frame_shift_del	c.2591	p.G864fs	0.001	NULL	NULL	(deletion:cds_exon[34723229,34726985])	no_errors	
C9orf96	169436	genome.wustl.edu	37	9	136266928	136266928	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	136266928	136266928	G	A	SNP	C9orf96	NM_153710	human	genbank	57_37b	+1	validated	silent	c.1260	p.L420	0.659	superfamily_ARM repeat	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,superfamily_ARM repeat	-	no_errors	
CARD10	29775	genome.wustl.edu	37	22	37892477	37892477	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	37892477	37892477	G	A	SNP	CARD10	NM_014550	human	genbank	57_37b	-1	reviewed	missense	c.2038	p.P680S	0.014	NULL	superfamily_DEATH_like,HMMPfam_CARD,superfamily_SSF52540	-	no_errors	
CBLC	23624	genome.wustl.edu	37	19	45303662	45303662	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	45303662	45303662	C	G	SNP	CBLC	NM_012116	human	genbank	57_37b	+1	validated	missense	c.1387	p.P463A	0.027	NULL	HMMPfam_Cbl_N,superfamily_N-terminal domain of cbl (N-cbl),HMMPfam_Cbl_N2,superfamily_EF-hand,HMMPfam_Cbl_N3,superfamily_SH2 domain,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors	
CROCCL1	84809	genome.wustl.edu	37	1	16952481	16952481	+	RNA	SNP	A	A	G	rs915311	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16952481	16952481	A	G	SNP	CROCCL1	NR_026752	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.003	-	-	-		
CROCCL1	84809	genome.wustl.edu	37	1	16955128	16955128	+	RNA	SNP	A	A	G	rs1762949	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16955128	16955128	A	G	SNP	CROCCL1	NR_026752	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.562	-	-	-		
CSPG4	1464	genome.wustl.edu	37	15	75977920	75977920	+	Silent	SNP	A	G	G	rs62027240	byCluster;byFrequency;by1000genomes	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	75977920	75977920	A	G	SNP	CSPG4	NM_001897	human	genbank	57_37b	-1	reviewed	silent	c.3912	p.P1304	0.823	PatternScan_ATPASE_ALPHA_BETA	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA	-		
CXorf30	645090	genome.wustl.edu	37	X	36366361	36366361	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	36366361	36366361	G	A	SNP	CXorf30	NM_001098843	human	genbank	57_37b	+1	validated	nonsense	c.899	p.W300*	0.903	NULL	NULL	-	no_errors	
CYLD	1540	genome.wustl.edu	37	16	50816338	50816338	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	50816338	50816338	G	A	SNP	CYLD	NM_015247	human	genbank	57_37b	+1	reviewed	missense	c.1787	p.G596D	1.000	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1	superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1	-	no_errors	
DRAM1	55332	genome.wustl.edu	37	12	102315029	102315029	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	102315029	102315029	T	C	SNP	DRAM1	NM_018370	human	genbank	57_37b	+1	reviewed	silent	c.708	p.G236	0.395	NULL	HMMPfam_Frag1	-	no_errors	
DUSP27	92235	genome.wustl.edu	37	1	167095632	167095632	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	167095632	167095632	G	A	SNP	DUSP27	NM_001080426	human	genbank	57_37b	+1	provisional	missense	c.1264	p.D422N	0.000	NULL	PatternScan_TYR_PHOSPHATASE_1,superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc	-	no_errors	
EEFSEC	60678	genome.wustl.edu	37	3	128060108	128060108	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	128060108	128060108	C	A	SNP	EEFSEC	NM_021937	human	genbank	57_37b	+1	validated	missense	c.819	p.F273L	0.996	superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2	-	no_errors	
ENSG00000163386	0	genome.wustl.edu	37	1	145367229	145367229	+	Missense_Mutation	SNP	G	G	C	rs113849871	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	145367229	145367229	G	C	SNP	ENSG00000163386	ENST00000369330	human	ensembl	57_37b	+1	known	missense	c.589	p.D197H	0.002	NULL	HMMPfam_DUF1220	-		
FEZF2	55079	genome.wustl.edu	37	3	62356997	62356997	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	62356997	62356997	C	A	SNP	FEZF2	NM_018008	human	genbank	57_37b	-1	validated	missense	c.1015	p.G339C	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
GABRD	2563	genome.wustl.edu	37	1	1957037	1957037	+	Silent	SNP	T	T	C	rs2229110	byCluster;byFrequency;by1000genomes	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1957037	1957037	T	C	SNP	GABRD	NM_000815	human	genbank	57_37b	+1	reviewed	silent	c.330	p.G110	0.995	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-		
ITPKB	3707	genome.wustl.edu	37	1	226923938	226923938	+	Missense_Mutation	SNP	A	A	C	rs6667260	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	226923938	226923938	A	C	SNP	ITPKB	NM_002221	human	genbank	57_37b	-1	reviewed	missense	c.1222	p.S408A	0.000	NULL	HMMPfam_IPK,superfamily_SAICAR synthase-like	-		
KCNC2	3747	genome.wustl.edu	37	12	75601389	75601389	+	Silent	SNP	G	G	A	rs61735712	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	75601389	75601389	G	A	SNP	KCNC2	NM_139137	human	genbank	57_37b	-1	reviewed	silent	c.375	p.C125	1.000	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-		
KCNE2	9992	genome.wustl.edu	37	21	35742917	35742917	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	35742917	35742917	A	T	SNP	KCNE2	NM_172201	human	genbank	57_37b	+1	reviewed	missense	c.140	p.Y47F	1.000	NULL	HMMPfam_ISK_Channel	-	no_errors	
KIF4B	285643	genome.wustl.edu	37	5	154395359	154395359	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	154395359	154395359	G	A	SNP	KIF4B	NM_001099293	human	genbank	57_37b	+1	provisional	missense	c.1940	p.R647Q	0.996	NULL	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors	
LAMA3	3909	genome.wustl.edu	37	18	21451420	21451420	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	21451420	21451420	G	A	SNP	LAMA3	NM_198129	human	genbank	57_37b	+1	reviewed	missense	c.4793	p.R1598H	0.002	HMMSmart_SM00281,HMMPfam_Laminin_B	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_EGF_2,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_CHAPERONINS_CPN60	-	no_errors	
LAMC3	10319	genome.wustl.edu	37	9	133948049	133948049	+	Missense_Mutation	SNP	A	A	G	rs2275140	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	133948049	133948049	A	G	SNP	LAMC3	NM_006059	human	genbank	57_37b	+1	reviewed	missense	c.3244	p.S1082G	0.006	NULL	HMMSmart_LamNT,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMPfam_Laminin_B,PatternScan_EGF_2	-		
LELP1	149018	genome.wustl.edu	37	1	153177464	153177464	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	153177464	153177464	G	A	SNP	LELP1	NM_001010857	human	genbank	57_37b	+1	provisional	missense	c.281	p.C94Y	0.598	NULL	NULL	-	no_errors	
LLGL2	3993	genome.wustl.edu	37	17	73567846	73567846	+	Missense_Mutation	SNP	C	T	T	rs1661715	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	73567846	73567846	C	T	SNP	LLGL2	NM_001031803	human	genbank	57_37b	+1	reviewed	missense	c.2275	p.P759S	0.997	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_LLGL,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-		
LOC100287658	0	genome.wustl.edu	37	18	34289239	34289239	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	34289239	34289239	G	T	SNP	LOC100287658	XM_002343605	human	genbank	57_37b	-1	model	nonsense	c.204	p.C68*	0.999	NULL	NULL	-	no_errors	
MAEL	84944	genome.wustl.edu	37	1	166958710	166958710	+	Missense_Mutation	SNP	T	T	G	rs11578336	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	166958710	166958710	T	G	SNP	MAEL	NM_032858	human	genbank	57_37b	+1	validated	missense	c.121	p.S41A	0.007	HMMPfam_DUF1898,superfamily_HMG-box	HMMPfam_DUF1898,superfamily_HMG-box	-		
MOV10	4343	genome.wustl.edu	37	1	113237171	113237171	+	Silent	SNP	A	A	G	rs883593	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	113237171	113237171	A	G	SNP	MOV10	NM_001130079	human	genbank	57_37b	+1	validated	silent	c.1392	p.T464	0.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_ER_TARGET	-		
MSLN	10232	genome.wustl.edu	37	16	814058	814058	+	Missense_Mutation	SNP	C	C	T	rs9927389	byCluster;byFrequency;by1000genomes	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	814058	814058	C	T	SNP	MSLN	NM_013404	human	genbank	57_37b	+1	reviewed	missense	c.215	p.A72V	0.000	HMMPfam_Mesothelin	HMMPfam_Mesothelin,PatternScan_HEMOPEXIN	-		
MYLK	4638	genome.wustl.edu	37	3	123456340	123456340	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	123456340	123456340	G	A	SNP	MYLK	NM_053025	human	genbank	57_37b	-1	reviewed	silent	c.639	p.N213	0.255	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
NAA50	0	genome.wustl.edu	37	3	113440684	113440684	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	113440684	113440684	C	T	SNP	NAA50	NM_025146	human	genbank	57_37b	-1	provisional	missense	c.433	p.A145T	1.000	superfamily_Acyl-CoA N-acyltransferases (Nat)	superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_Acetyltransf_1	-	no_errors	
NUAK1	9891	genome.wustl.edu	37	12	106466578	106466578	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	106466578	106466578	A	C	SNP	NUAK1	NM_014840	human	genbank	57_37b	-1	validated	missense	c.623	p.F208C	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
OBSCN	84033	genome.wustl.edu	37	1	228520995	228520995	+	Missense_Mutation	SNP	G	G	A	rs56015866	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228520995	228520995	G	A	SNP	OBSCN	NM_001098623	human	genbank	57_37b	+1	reviewed	missense	c.15827	p.R5276H	0.981	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-		
OSBP2	23762	genome.wustl.edu	37	22	31289855	31289855	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	31289855	31289855	G	A	SNP	OSBP2	NM_030758	human	genbank	57_37b	+1	reviewed	missense	c.2242	p.G748S	1.000	HMMPfam_Oxysterol_BP	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_Oxysterol_BP,PatternScan_OSBP	-	no_errors	
PCDHA8	56140	genome.wustl.edu	37	5	140222367	140222367	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140222367	140222367	C	T	SNP	PCDHA8	NM_018911	human	genbank	57_37b	+1	reviewed	silent	c.1461	p.N487	0.912	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PTPRE	5791	genome.wustl.edu	37	10	129839137	129839137	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	129839137	129839137	A	T	SNP	PTPRE	NM_006504	human	genbank	57_37b	+1	reviewed	splice_site	c.1-2	e1-2	0.898	-	-	-	no_errors	
PTPRO	5800	genome.wustl.edu	37	12	15661533	15661533	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	15661533	15661533	G	T	SNP	PTPRO	NM_030667	human	genbank	57_37b	+1	reviewed	silent	c.1296	p.L432	0.867	superfamily_Fibronectin type III	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
RBM22	55696	genome.wustl.edu	37	5	150076368	150076368	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	150076368	150076368	C	T	SNP	RBM22	NM_018047	human	genbank	57_37b	-1	reviewed	silent	c.357	p.Q119	1.000	NULL	HMMSmart_SM00356,HMMPfam_zf-CCCH,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors	
REG1B	5968	genome.wustl.edu	37	2	79312688	79312688	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	79312688	79312688	G	T	SNP	REG1B	NM_006507	human	genbank	57_37b	-1	reviewed	nonsense	c.363	p.Y121*	0.158	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors	
RNF216L	0	genome.wustl.edu	37	7	5036758	5036758	+	RNA	SNP	A	A	C	rs9639895	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	5036758	5036758	A	C	SNP	RNF216L	NR_015449	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.920	-	-	-		
RPL13A	23521	genome.wustl.edu	37	19	49995067	49995067	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49995067	49995067	G	C	SNP	RPL13A	NM_012423	human	genbank	57_37b	+1	reviewed	missense	c.607	p.V203L	1.000	NULL	HMMPfam_Ribosomal_L13,superfamily_Ribosomal_L13,PatternScan_RIBOSOMAL_L13	-	no_errors	
SEC16A	9919	genome.wustl.edu	37	9	139371342	139371342	+	Silent	SNP	G	G	A	rs11999525	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139371342	139371342	G	A	SNP	SEC16A	NM_014866	human	genbank	57_37b	-1	validated	silent	c.726	p.P242	0.000	NULL	NULL	-		
SEMA3F	6405	genome.wustl.edu	37	3	50211374	50211374	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	50211374	50211374	C	T	SNP	SEMA3F	NM_004186	human	genbank	57_37b	+1	validated	silent	c.261	p.R87	0.055	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	-	no_errors	
SERINC2	347735	genome.wustl.edu	37	1	31898637	31898637	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	31898637	31898637	G	A	SNP	SERINC2	NM_178865	human	genbank	57_37b	+1	validated	missense	c.487	p.G163S	1.000	HMMPfam_Serinc	HMMPfam_Serinc	-	no_errors	
SETMAR	6419	genome.wustl.edu	37	3	4358476	4358476	+	Missense_Mutation	SNP	C	C	T	rs115195721	by1000genomes	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	4358476	4358476	C	T	SNP	SETMAR	NM_006515	human	genbank	57_37b	+1	validated	missense	c.1601	p.T534I	0.836	HMMPfam_Transposase_1	HMMSmart_SM00468,HMMPfam_Pre-SET,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMPfam_Transposase_1	-		
SGCZ	137868	genome.wustl.edu	37	8	13965683	13965683	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	13965683	13965683	G	T	SNP	SGCZ	NM_139167	human	genbank	57_37b	-1	reviewed	silent	c.609	p.S203	0.983	HMMPfam_Sarcoglycan_1	HMMPfam_Sarcoglycan_1	-	no_errors	
SLC25A35	399512	genome.wustl.edu	37	17	8198073	8198076	+	Frame_Shift_Del	DEL	TTGG	TTGG	-	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	TTGG	TTGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	8198073	8198076	TTGG	-	DEL	SLC25A35	NM_201520	human	genbank	57_37b	-1	provisional	frame_shift_del	c.53_50	p.T17fs	1.000:1.000:1.000:1.000	HMMPfam_Mito_carr,superfamily_Mitoch_carrier	HMMPfam_Mito_carr,superfamily_Mitoch_carrier	(deletion:cds_exon[8197751,8198125])	no_errors	
SYNCRIP	10492	genome.wustl.edu	37	6	86351074	86351074	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	86351074	86351074	C	T	SNP	SYNCRIP	NM_006372	human	genbank	57_37b	-1	validated	silent	c.84	p.Q28	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors	
TCAP	8557	genome.wustl.edu	37	17	37822311	37822311	+	Silent	SNP	A	A	C	rs1053651	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	37822311	37822311	A	C	SNP	TCAP	NM_003673	human	genbank	57_37b	+1	reviewed	silent	c.453	p.A151	0.939	HMMPfam_Telethonin	HMMPfam_Telethonin	-		
TECTA	7007	genome.wustl.edu	37	11	121028626	121028626	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	121028626	121028626	C	G	SNP	TECTA	NM_005422	human	genbank	57_37b	+1	reviewed	missense	c.4382	p.P1461R	1.000	HMMSmart_SM00215,PatternScan_FA58C_2	HMMSmart_SM00539,HMMPfam_NIDO,HMMSmart_SM00215,HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00181,PatternScan_EGF_2,PatternScan_FA58C_2,HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1,superfamily_EGF/Laminin	-	no_errors	
TOMM40L	84134	genome.wustl.edu	37	1	161198536	161198536	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	161198536	161198536	C	G	SNP	TOMM40L	NM_032174	human	genbank	57_37b	+1	validated	missense	c.716	p.T239R	1.000	HMMPfam_Porin_3	HMMPfam_Porin_3	-	no_errors	
TOR1AIP2	163590	genome.wustl.edu	37	1	179816677	179816677	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	179816677	179816677	C	A	SNP	TOR1AIP2	NM_145034	human	genbank	57_37b	-1	validated	missense	c.648	p.W216C	0.004	HMMPfam_LAP1C	HMMPfam_LAP1C	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7579321	7579322	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7579321	7579322	CA	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.366_365	p.V122fs	0.949:0.997	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7579312,7579590])	no_errors	
TRPC6	7225	genome.wustl.edu	37	11	101353892	101353892	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	101353892	101353892	C	A	SNP	TRPC6	NM_004621	human	genbank	57_37b	-1	reviewed	missense	c.1298	p.G433V	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_TRP_2,HMMPfam_Ion_trans	-	no_errors	
TTBK1	84630	genome.wustl.edu	37	6	43251118	43251118	+	Silent	SNP	C	C	T	rs45515398	byCluster;byFrequency;by1000genomes	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43251118	43251118	C	T	SNP	TTBK1	NM_032538	human	genbank	57_37b	+1	validated	silent	c.2640	p.D880	0.892	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP	-		
UBN2	254048	genome.wustl.edu	37	7	138946092	138946092	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	138946092	138946092	G	A	SNP	UBN2	NM_173569	human	genbank	57_37b	+1	validated	missense	c.751	p.E251K	1.000	NULL	PatternScan_TUBULIN	-	no_errors	
VCL	7414	genome.wustl.edu	37	10	75854054	75854054	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	75854054	75854054	C	T	SNP	VCL	NM_014000	human	genbank	57_37b	+1	reviewed	nonsense	c.1378	p.R460*	1.000	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	superfamily_alpha-catenin/vinculin,HMMPfam_Vinculin,PatternScan_VINCULIN_1,PatternScan_VINCULIN_2	-	no_errors	
VIT	5212	genome.wustl.edu	37	2	36994428	36994428	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	36994428	36994428	G	A	SNP	VIT	NM_053276	human	genbank	57_37b	+1	provisional	missense	c.679	p.D227N	0.983	NULL	superfamily_LCCL,HMMSmart_LCCL,HMMPfam_LCCL,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA	-	no_errors	
YLPM1	56252	genome.wustl.edu	37	14	75264973	75264973	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	75264973	75264973	T	G	SNP	YLPM1	NM_019589	human	genbank	57_37b	+1	validated	missense	c.2973	p.H991Q	1.000	NULL	HMMPfam_YLP,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
ZNF157	7712	genome.wustl.edu	37	X	47272787	47272787	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	47272787	47272787	G	C	SNP	ZNF157	NM_003446	human	genbank	57_37b	+1	reviewed	missense	c.1315	p.E439Q	1.000	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF654	55279	genome.wustl.edu	37	3	88188575	88188575	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	88188575	88188575	C	T	SNP	ZNF654	NM_018293	human	genbank	57_37b	+1	validated	missense	c.115	p.L39F	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF683	257101	genome.wustl.edu	37	1	26694191	26694191	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	26694191	26694191	G	T	SNP	ZNF683	NM_001114759	human	genbank	57_37b	-1	validated	missense	c.212	p.S71Y	0.006	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF730	0	genome.wustl.edu	37	19	23329065	23329065	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AY-01A-21D-A12Q-09	TCGA-AR-A1AY-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	23329065	23329065	C	T	SNP	ZNF730	XM_001719792	human	genbank	57_37b	+1	model	missense	c.1345	p.R449C	0.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
