Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCA13	154664	genome.wustl.edu	37	7	48390275	48390275	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	48390275	48390275	G	A	SNP	ABCA13	NM_152701	human	genbank	57_37b	+1	reviewed	missense	c.10240	p.A3414T	0.001	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	-	no_errors	
ABCA4	24	genome.wustl.edu	37	1	94505646	94505646	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	94505646	94505646	G	A	SNP	ABCA4	NM_000350	human	genbank	57_37b	-1	reviewed	missense	c.3560	p.T1187M	0.138	NULL	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ADAMTS12	81792	genome.wustl.edu	37	5	33642057	33642057	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	33642057	33642057	A	T	SNP	ADAMTS12	NM_030955	human	genbank	57_37b	-1	reviewed	missense	c.1576	p.C526S	1.000	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors	
ADAMTSL3	57188	genome.wustl.edu	37	15	84651068	84651068	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	84651068	84651068	G	A	SNP	ADAMTSL3	NM_207517	human	genbank	57_37b	+1	validated	silent	c.2688	p.P896	0.942	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_PLAC	-	no_errors	
ANTXR1	84168	genome.wustl.edu	37	2	69408958	69408958	+	Missense_Mutation	SNP	C	C	T	rs115079162	by1000genomes	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	69408958	69408958	C	T	SNP	ANTXR1	NM_032208	human	genbank	57_37b	+1	reviewed	missense	c.1130	p.T377M	0.998	NULL	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Anth_Ig,HMMPfam_Ant_C	-		
ATP10A	57194	genome.wustl.edu	37	15	25925334	25925334	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	25925334	25925334	G	T	SNP	ATP10A	NM_024490	human	genbank	57_37b	-1	reviewed	missense	c.3800	p.A1267D	0.163	NULL	HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Hydrolase_3	-	no_errors	
ATP7B	540	genome.wustl.edu	37	13	52508972	52508972	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	52508972	52508972	G	A	SNP	ATP7B	NM_000053	human	genbank	57_37b	-1	reviewed	missense	c.4318	p.R1440W	0.655	NULL	superfamily_HMA heavy metal-associated domain,HMMPfam_HMA,PatternScan_HMA_1,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors	
AURKC	6795	genome.wustl.edu	37	19	57743593	57743593	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	57743593	57743593	G	C	SNP	AURKC	NM_001015878	human	genbank	57_37b	+1	reviewed	splice_site	c.296+1	e3+1	1.000	-	-	-	no_errors	
C10orf128	170371	genome.wustl.edu	37	10	50369647	50369647	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	50369647	50369647	T	G	SNP	C10orf128	NM_001010863	human	genbank	57_37b	-1	provisional	missense	c.290	p.K97T	0.003	NULL	NULL	-	no_errors	
CAMSAP1	157922	genome.wustl.edu	37	9	138714775	138714775	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	138714775	138714775	C	T	SNP	CAMSAP1	NM_015447	human	genbank	57_37b	-1	validated	missense	c.1732	p.G578R	0.562	NULL	superfamily_Calponin-homology domain CH-domain,superfamily_PRC-barrel domain,HMMPfam_DUF1781	-	no_errors	
CDK5RAP2	55755	genome.wustl.edu	37	9	123232463	123232463	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	123232463	123232463	A	C	SNP	CDK5RAP2	NM_018249	human	genbank	57_37b	-1	reviewed	missense	c.1894	p.Y632D	1.000	NULL	HMMPfam_Microtub_assoc	-	no_errors	
CHD4	1108	genome.wustl.edu	37	12	6696712	6696712	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6696712	6696712	T	C	SNP	CHD4	NM_001273	human	genbank	57_37b	-1	reviewed	silent	c.3717	p.K1239	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_CHDNT,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00298,superfamily_Chromo domain-like,PatternScan_CHROMO_1,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_DUF1087,HMMPfam_DUF1086,HMMPfam_CHDCT2	-	no_errors	
CHN2	1124	genome.wustl.edu	37	7	29407574	29407574	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	29407574	29407574	C	T	SNP	CHN2	NM_004067	human	genbank	57_37b	+1	reviewed	missense	c.115	p.R39C	1.000	NULL	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
CST7	8530	genome.wustl.edu	37	20	24930099	24930099	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	24930099	24930099	C	T	SNP	CST7	NM_003650	human	genbank	57_37b	+1	reviewed	silent	c.24	p.H8	0.000	NULL	HMMSmart_SM00043,HMMPfam_Cystatin,superfamily_Cystatin/monellin	-	no_errors	
CT47B1	0	genome.wustl.edu	37	X	120009253	120009253	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	120009253	120009253	G	A	SNP	CT47B1	NM_001145718	human	genbank	57_37b	-1	validated	missense	c.272	p.T91M	0.000	NULL	NULL	-	no_errors	
CTDP1	9150	genome.wustl.edu	37	18	77475211	77475211	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	77475211	77475211	C	T	SNP	CTDP1	NM_004715	human	genbank	57_37b	+1	reviewed	missense	c.1751	p.T584M	0.010	NULL	superfamily_HAD-like,HMMPfam_NIF,HMMSmart_SM00577,superfamily_BRCT domain,HMMSmart_SM00292,HMMPfam_BRCT,HMMPfam_FCP1_C	-	no_errors	
DLGAP1	9229	genome.wustl.edu	37	18	3567558	3567558	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	3567558	3567558	C	A	SNP	DLGAP1	NM_004746	human	genbank	57_37b	-1	provisional	missense	c.1987	p.D663Y	1.000	HMMPfam_GKAP	HMMPfam_GKAP	-	no_errors	
DNAJC13	23317	genome.wustl.edu	37	3	132245098	132245098	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	132245098	132245098	G	A	SNP	DNAJC13	NM_015268	human	genbank	57_37b	+1	validated	silent	c.6354	p.Q2118	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMSmart_SM00271,HMMPfam_DnaJ,PatternScan_AA_TRNA_LIGASE_I	-	no_errors	
DNASE2	1777	genome.wustl.edu	37	19	12989580	12989580	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12989580	12989580	C	-	DEL	DNASE2	NM_001375	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.415	p.A139fs	0.001	HMMPfam_DNase_II	HMMPfam_DNase_II,PatternScan_AKH	(deletion:cds_exon[12989484,12989648])	no_errors	
ENSG00000200238	0	genome.wustl.edu	37	3	56219180	56219184	+	RNA	DEL	AAGCT	AAGCT	-	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	AAGCT	AAGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	56219180	56219184	AAGCT	-	DEL	ENSG00000200238	ENST00000363368	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.010:0.007:0.002:0.002:0.002	-	-	(deletion:rna[56219144,56219250])	no_errors	
ENSG00000205046	0	genome.wustl.edu	37	11	51459467	51459467	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	51459467	51459467	G	A	SNP	ENSG00000205046	ENST00000378440	human	ensembl	57_37b	-1	known	silent	c.147	p.V49	0.003	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
ENSG00000245309	0	genome.wustl.edu	37	6	26234493	26234493	+	RNA	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26234493	26234493	G	A	SNP	ENSG00000245309	ENST00000498913	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	
ENSG00000247772	0	genome.wustl.edu	37	11	47377894	47377895	+	RNA	DEL	CA	CA	-	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47377894	47377895	CA	-	DEL	ENSG00000247772	ENST00000499849	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.007:0.007	-	-	(deletion:rna[47376886,47379300])	no_errors	
ETV6	2120	genome.wustl.edu	37	12	12022707	12022707	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	12022707	12022707	C	T	SNP	ETV6	NM_001987	human	genbank	57_37b	+1	reviewed	silent	c.813	p.S271	0.997	NULL	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_2"	-	no_errors	
EVC2	132884	genome.wustl.edu	37	4	5624559	5624559	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	5624559	5624559	G	A	SNP	EVC2	NM_147127	human	genbank	57_37b	-1	reviewed	missense	c.2206	p.L736F	0.933	NULL	NULL	-	no_errors	
FAM171A1	221061	genome.wustl.edu	37	10	15325912	15325912	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	15325912	15325912	G	-	DEL	FAM171A1	NM_001010924	human	genbank	57_37b	-1	validated	frame_shift_del	c.290	p.P97fs	1.000	HMMPfam_UPF0560	HMMPfam_UPF0560	(deletion:cds_exon[15325877,15326104])	no_errors	
FAM82B	51115	genome.wustl.edu	37	8	87498796	87498796	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	87498796	87498796	C	A	SNP	FAM82B	NM_016033	human	genbank	57_37b	-1	validated	nonsense	c.412	p.E138*	0.968	superfamily_Prenyl_trans	superfamily_Prenyl_trans	-	no_errors	
FBXO7	25793	genome.wustl.edu	37	22	32881084	32881084	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	32881084	32881084	G	A	SNP	FBXO7	NM_012179	human	genbank	57_37b	+1	reviewed	silent	c.675	p.P225	0.011	NULL	superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX	-	no_errors	
FLJ42393	401105	genome.wustl.edu	37	3	187897954	187897954	+	RNA	SNP	T	T	A	rs2127519	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	187897954	187897954	T	A	SNP	FLJ42393	NR_024413	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.003	-	-	-		
GJA9	81025	genome.wustl.edu	37	1	39340570	39340570	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	39340570	39340570	T	C	SNP	GJA9	NM_030772	human	genbank	57_37b	-1	provisional	missense	c.1201	p.M401V	0.000	NULL	HMMPfam_Connexin,HMMSmart_SM00037,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2	-	no_errors	
HYDIN	54768	genome.wustl.edu	37	16	71103181	71103181	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	71103181	71103181	C	A	SNP	HYDIN	NM_032821	human	genbank	57_37b	-1	validated	missense	c.1963	p.A655S	0.980	NULL	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
IGSF9B	22997	genome.wustl.edu	37	11	133801654	133801654	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	133801654	133801654	G	A	SNP	IGSF9B	NM_014987	human	genbank	57_37b	-1	validated	nonsense	c.1147	p.R383*	1.000	superfamily_SSF48726,HMMSmart_IG	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_fn3	-	no_errors	
IL34	146433	genome.wustl.edu	37	16	70690933	70690933	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	70690933	70690933	C	T	SNP	IL34	NM_152456	human	genbank	57_37b	+1	validated	missense	c.311	p.S104L	0.002	NULL	NULL	-	no_errors	
ITPR2	3709	genome.wustl.edu	37	12	26752146	26752146	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	26752146	26752146	A	T	SNP	ITPR2	NM_002223	human	genbank	57_37b	-1	validated	missense	c.3934	p.F1312I	1.000	HMMPfam_RYDR_ITPR	HMMPfam_Ins145_P3_rec,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472,HMMPfam_MIR,superfamily_IP3 receptor type 1 binding core domain 2,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans	-	no_errors	
IVNS1ABP	10625	genome.wustl.edu	37	1	185269464	185269465	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	185269464	185269465	AT	-	DEL	IVNS1ABP	NM_006469	human	genbank	57_37b	-1	validated	frame_shift_del	c.1254_1253	p.Y418fs	1.000:1.000	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	(deletion:cds_exon[185269349,185269475])	no_errors	
KANK4	163782	genome.wustl.edu	37	1	62734091	62734091	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	62734091	62734091	T	C	SNP	KANK4	NM_181712	human	genbank	57_37b	-1	validated	missense	c.2099	p.D700G	0.003	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors	
KCNK18	338567	genome.wustl.edu	37	10	118969429	118969429	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	118969429	118969429	G	T	SNP	KCNK18	NM_181840	human	genbank	57_37b	+1	provisional	missense	c.774	p.L258F	0.000	superfamily_SSF81324	superfamily_SSF81324,HMMPfam_Ion_trans_2	-	no_errors	
KCNQ3	3786	genome.wustl.edu	37	8	133187705	133187705	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	133187705	133187705	C	G	SNP	KCNQ3	NM_004519	human	genbank	57_37b	-1	reviewed	missense	c.928	p.G310R	1.000	superfamily_SSF81324,HMMPfam_Ion_trans	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel	-	no_errors	
LOC148709	148709	genome.wustl.edu	37	1	202842333	202842333	+	RNA	SNP	C	C	T	rs12094889	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	202842333	202842333	C	T	SNP	LOC148709	NR_002929	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.639	-	-	-		
LYN	4067	genome.wustl.edu	37	8	56922638	56922638	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	56922638	56922638	C	A	SNP	LYN	NM_002350	human	genbank	57_37b	+1	validated	missense	c.1508	p.A503D	1.000	superfamily_Protein kinase-like (PK-like)	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
MECP2	4204	genome.wustl.edu	37	X	153296841	153296841	+	Silent	SNP	G	G	A	rs61748386	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153296841	153296841	G	A	SNP	MECP2	NM_001110792	human	genbank	57_37b	-1	reviewed	silent	c.474	p.G158	0.999	superfamily_DNA-binding_integrase-type,HMMPfam_MBD,HMMSmart_MBD	superfamily_DNA-binding_integrase-type,HMMPfam_MBD,HMMSmart_MBD,HMMPfam_AT_hook,HMMSmart_AT_hook	-		
MLH3	27030	genome.wustl.edu	37	14	75498872	75498872	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	75498872	75498872	C	G	SNP	MLH3	NM_001040108	human	genbank	57_37b	-1	reviewed	missense	c.3726	p.E1242D	1.000	HMMPfam_MutL_C	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,PatternScan_DNA_MISMATCH_REPAIR_1,superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_DNA_mis_repair,HMMPfam_MutL_C	-	no_errors	
MPDZ	8777	genome.wustl.edu	37	9	13206024	13206025	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	13206024	13206025	CA	-	DEL	MPDZ	NM_003829	human	genbank	57_37b	-1	validated	frame_shift_del	c.1365_1364	p.V455fs	0.692:0.996	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	HMMPfam_L27_2,superfamily_L27 domain,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	(deletion:cds_exon[13205915,13206098])	no_errors	
MRE11A	4361	genome.wustl.edu	37	11	94194141	94194141	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	94194141	94194141	T	C	SNP	MRE11A	NM_005591	human	genbank	57_37b	-1	reviewed	silent	c.1287	p.V429	0.980	HMMPfam_Mre11_DNA_bind	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases,HMMPfam_Mre11_DNA_bind	-	no_errors	
MTMR15	22909	genome.wustl.edu	37	15	31202935	31202935	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	31202935	31202935	C	T	SNP	MTMR15	NM_014967	human	genbank	57_37b	+1	reviewed	silent	c.1494	p.D498	0.001	NULL	HMMSmart_SM00734,HMMPfam_VRR_NUC	-	no_errors	
MYPN	84665	genome.wustl.edu	37	10	69948709	69948709	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	69948709	69948709	G	C	SNP	MYPN	NM_032578	human	genbank	57_37b	+1	validated	missense	c.2751	p.E917D	1.000	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,PatternScan_ER_TARGET	-	no_errors	
NPY	4852	genome.wustl.edu	37	7	24331283	24331283	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	24331283	24331283	C	T	SNP	NPY	NM_000905	human	genbank	57_37b	+1	reviewed	missense	c.271	p.L91F	1.000	NULL	HMMPfam_Hormone_3,HMMSmart_SM00309,PatternScan_PANCREATIC_HORMONE_1	-	no_errors	
NSDHL	50814	genome.wustl.edu	37	X	152036194	152036194	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	152036194	152036194	C	T	SNP	NSDHL	NM_001129765	human	genbank	57_37b	+1	reviewed	nonsense	c.766	p.R256*	0.001	superfamily_NAD(P)-bd,HMMPfam_3Beta_HSD	superfamily_NAD(P)-bd,HMMPfam_3Beta_HSD	-	no_errors	
OR1M1	125963	genome.wustl.edu	37	19	9204487	9204487	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9204487	9204487	C	A	SNP	OR1M1	NM_001004456	human	genbank	57_37b	+1	provisional	nonsense	c.567	p.C189*	0.083	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR2D3	120775	genome.wustl.edu	37	11	6943082	6943082	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6943082	6943082	A	G	SNP	OR2D3	NM_001004684	human	genbank	57_37b	+1	provisional	missense	c.850	p.K284E	0.004	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR5D14	219436	genome.wustl.edu	37	11	55563102	55563102	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55563102	55563102	A	T	SNP	OR5D14	NM_001004735	human	genbank	57_37b	+1	provisional	missense	c.71	p.K24M	0.138	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OTOP2	92736	genome.wustl.edu	37	17	72929557	72929557	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72929557	72929557	A	T	SNP	OTOP2	NM_178160	human	genbank	57_37b	+1	provisional	missense	c.1606	p.I536F	1.000	HMMPfam_DUF270	HMMPfam_DUF270	-	no_errors	
PARK2	5071	genome.wustl.edu	37	6	161781222	161781222	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	161781222	161781222	C	T	SNP	PARK2	NM_004562	human	genbank	57_37b	-1	reviewed	missense	c.1183	p.E395K	0.268	NULL	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,HMMPfam_IBR,HMMSmart_SM00647,superfamily_RING/U-box	-	no_errors	
PARS2	25973	genome.wustl.edu	37	1	55224704	55224704	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	55224704	55224704	C	T	SNP	PARS2	NM_152268	human	genbank	57_37b	-1	provisional	missense	c.131	p.R44H	0.201	NULL	superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b,superfamily_Anticodon-binding domain of Class II aaRS,HMMPfam_HGTP_anticodon	-	no_errors	
PELP1	27043	genome.wustl.edu	37	17	4576579	4576579	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4576579	4576579	G	A	SNP	PELP1	NM_014389	human	genbank	57_37b	-1	validated	missense	c.1811	p.A604V	1.000	HMMPfam_NUC202	HMMPfam_NUC201,HMMPfam_NUC202	-	no_errors	
PHC1B	0	genome.wustl.edu	37	12	55805942	55805942	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	55805942	55805942	C	T	SNP	PHC1B	ENST00000326184	human	ensembl	57_37b	-1	known	missense	c.2579	p.R860H	1.000	NULL	HMMPfam_zf-FCS,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors	
PIAS3	10401	genome.wustl.edu	37	1	145578592	145578592	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	145578592	145578592	C	T	SNP	PIAS3	ENST00000369299	human	ensembl	57_37b	+1	known	silent	c.555	p.G185	0.206	NULL	HMMPfam_SAP,HMMSmart_SAP	-	no_errors	
PRDM1	639	genome.wustl.edu	37	6	106547224	106547224	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	106547224	106547224	A	G	SNP	PRDM1	NM_001198	human	genbank	57_37b	+1	reviewed	missense	c.461	p.E154G	1.000	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199,PatternScan_AA_TRNA_LIGASE_I,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
PRICKLE3	4007	genome.wustl.edu	37	X	49032341	49032341	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	49032341	49032341	C	T	SNP	PRICKLE3	NM_006150	human	genbank	57_37b	-1	reviewed	missense	c.1529	p.R510H	0.000	NULL	HMMPfam_PET,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors	
PTK7	5754	genome.wustl.edu	37	6	43111336	43111336	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43111336	43111336	G	T	SNP	PTK7	NM_002821	human	genbank	57_37b	+1	reviewed	missense	c.2229	p.E743D	1.000	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
RBM26	64062	genome.wustl.edu	37	13	79911273	79911273	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	79911273	79911273	C	T	SNP	RBM26	ENST00000411438	human	ensembl	57_37b	-1	known	missense	c.95	p.R32Q	0.927	NULL	NULL	-	no_errors	
RNF10	9921	genome.wustl.edu	37	12	121002888	121002888	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	121002888	121002888	G	A	SNP	RNF10	NM_014868	human	genbank	57_37b	+1	reviewed	missense	c.1679	p.R560H	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors	
SCN4B	6330	genome.wustl.edu	37	11	118004688	118004688	+	RNA	SNP	A	A	G	rs3741315	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118004688	118004688	A	G	SNP	SCN4B	NR_024527	human	genbank	57_37b	-1	reviewed	rna	NULL	NULL	0.000	-	-	-		
SERPINB3	6317	genome.wustl.edu	37	18	61322965	61322965	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	61322965	61322965	G	C	SNP	SERPINB3	NM_006919	human	genbank	57_37b	-1	validated	missense	c.1099	p.H367D	1.000	HMMPfam_Serpin,superfamily_Serpins,HMMSmart_SM00093,PatternScan_SERPIN	HMMPfam_Serpin,superfamily_Serpins,HMMSmart_SM00093,PatternScan_SERPIN	-	no_errors	
SP3	6670	genome.wustl.edu	37	2	174820722	174820722	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	174820722	174820722	A	C	SNP	SP3	NM_003111	human	genbank	57_37b	-1	reviewed	missense	c.518	p.I173R	1.000	NULL	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	
SRCAP	10847	genome.wustl.edu	37	16	30750833	30750833	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	30750833	30750833	C	G	SNP	SRCAP	NM_006662	human	genbank	57_37b	+1	validated	missense	c.9472	p.Q3158E	0.989	NULL	HMMPfam_HSA,HMMSmart_SM00573,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_AT_hook,HMMSmart_SM00384	-	no_errors	
STAG2	10735	genome.wustl.edu	37	X	123195113	123195113	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	123195113	123195113	G	A	SNP	STAG2	NM_001042749	human	genbank	57_37b	+1	validated	missense	c.1456	p.D486N	1.000	superfamily_ARM-type_fold	HMMPfam_STAG,superfamily_ARM-type_fold	-	no_errors	
STAG3L3	442578	genome.wustl.edu	37	7	72470053	72470053	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	72470053	72470053	G	T	SNP	STAG3L3	NM_001013739	human	genbank	57_37b	-1	validated	silent	c.288	p.I96	0.980	NULL	NULL	-	no_errors	
STAT4	6775	genome.wustl.edu	37	2	191896229	191896229	+	Silent	SNP	T	T	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	191896229	191896229	T	A	SNP	STAT4	NM_003151	human	genbank	57_37b	-1	reviewed	silent	c.2058	p.T686	1.000	superfamily_SSF55550	superfamily_STAT,HMMPfam_STAT_int,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_P53_like_DNA_bnd,superfamily_SSF55550,HMMPfam_SH2,HMMSmart_SH2	-	no_errors	
SULT1C3	442038	genome.wustl.edu	37	2	108875471	108875471	+	Missense_Mutation	SNP	G	G	T	rs13385082	byCluster;by1000genomes	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	108875471	108875471	G	T	SNP	SULT1C3	ENST00000376700	human	ensembl	57_37b	+1	known	missense	c.671	p.W224L	0.001	superfamily_SSF52540,HMMPfam_Sulfotransfer_1	superfamily_SSF52540,HMMPfam_Sulfotransfer_1	-		
TBC1D28	254272	genome.wustl.edu	37	17	18544650	18544650	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18544650	18544650	C	T	SNP	TBC1D28	NM_001039397	human	genbank	57_37b	-1	validated	missense	c.16	p.D6N	0.665	NULL	superfamily_RabGAP_TBC	-	no_errors	
TMEM182	130827	genome.wustl.edu	37	2	103414461	103414461	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	103414461	103414461	T	C	SNP	TMEM182	NM_144632	human	genbank	57_37b	+1	validated	splice_site	c.469+2	e4+2	1.000	-	-	-	no_errors	
TMTC4	84899	genome.wustl.edu	37	13	101288959	101288959	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	101288959	101288959	C	A	SNP	TMTC4	NM_032813	human	genbank	57_37b	-1	validated	missense	c.1029	p.L343F	1.000	HMMPfam_DUF1736	HMMPfam_DUF1736,superfamily_TPR-like,HMMPfam_TPR_2,HMMSmart_SM00028,HMMPfam_TPR_1	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578526	7578526	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578526	7578526	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.404	p.C135Y	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
TRGV7	0	genome.wustl.edu	37	7	38374697	38374697	+	Silent	SNP	G	A	A	rs2240853	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	38374697	38374697	G	A	SNP	TRGV7	ENST00000414244	human	ensembl	57_37b	-1	known	silent	c.298	p.L100	0.000	HMMPfam_V-set,superfamily_Immunoglobulin	HMMPfam_V-set,superfamily_Immunoglobulin	-		
TRO	7216	genome.wustl.edu	37	X	54955699	54955699	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	54955699	54955699	G	A	SNP	TRO	NM_001039705	human	genbank	57_37b	+1	reviewed	missense	c.2542	p.G848S	0.937	NULL	HMMPfam_MAGE	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179641907	179641907	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179641907	179641907	T	A	SNP	TTN	NM_133379	human	genbank	57_37b	-1	reviewed	missense	c.4783	p.I1595F	1.000	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_Titin_Z,HMMPfam_ig,PatternScan_IG_MHC,PatternScan_THIOL_PROTEASE_HIS	-	no_errors	
UGT8	7368	genome.wustl.edu	37	4	115544067	115544067	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	115544067	115544067	C	T	SNP	UGT8	NM_001128174	human	genbank	57_37b	+1	validated	silent	c.31	p.L11	1.000	NULL	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors	
UNC93A	54346	genome.wustl.edu	37	6	167709557	167709557	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	167709557	167709557	G	A	SNP	UNC93A	NM_018974	human	genbank	57_37b	+1	validated	missense	c.307	p.G103R	0.988	superfamily_MFS_gen_substrate_transporter,HMMPfam_DUF895	superfamily_MFS_gen_substrate_transporter,HMMPfam_DUF895	-	no_errors	
UTRN	7402	genome.wustl.edu	37	6	144832252	144832252	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	144832252	144832252	C	G	SNP	UTRN	NM_007124	human	genbank	57_37b	+1	reviewed	missense	c.4937	p.T1646S	0.915	superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_SSF47473,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1	-	no_errors	
VCPIP1	80124	genome.wustl.edu	37	8	67547342	67547342	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	67547342	67547342	G	A	SNP	VCPIP1	NM_025054	human	genbank	57_37b	-1	validated	silent	c.3063	p.N1021	0.999	NULL	HMMPfam_OTU	-	no_errors	
ZNF732	0	genome.wustl.edu	37	4	264558	264558	+	Missense_Mutation	SNP	G	G	A	rs17775145	byCluster;byFrequency;by1000genomes	TCGA-B6-A0I9-01A-11W-A050-09	TCGA-B6-A0I9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	264558	264558	G	A	SNP	ZNF732	ENST00000341087	human	ensembl	57_37b	-1	known	missense	c.785	p.S262F	0.627	superfamily_C2H2 and C2HC zinc fingers	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-		
