Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ARID3A	1820	genome.wustl.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595	byCluster;byHapMap;by1000genomes	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	929753	929753	A	G	SNP	ARID3A	NM_005224	human	genbank	57_37b	+1	reviewed	silent	c.225	p.P75	0.017	NULL	superfamily_ARID,HMMPfam_ARID,HMMSmart_BRIGHT	-		
BTBD11	121551	genome.wustl.edu	37	12	107937768	107937768	+	Missense_Mutation	SNP	G	G	A	rs1558781	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	107937768	107937768	G	A	SNP	BTBD11	NM_001018072	human	genbank	57_37b	+1	validated	missense	c.1342	p.G448S	0.929	NULL	superfamily_Histone-fold,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225	-		
CNTLN	54875	genome.wustl.edu	37	9	17486986	17486986	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	17486986	17486986	G	A	SNP	CNTLN	NM_017738	human	genbank	57_37b	+1	validated	splice_site	c.4042-1	e25-1	1.000	-	-	-	no_errors	
DCAF5	8816	genome.wustl.edu	37	14	69520662	69520662	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	69520662	69520662	T	A	SNP	DCAF5	NM_003861	human	genbank	57_37b	-1	validated	missense	c.2741	p.H914L	0.992	NULL	HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like	-	no_errors	
DCUN1D2	55208	genome.wustl.edu	37	13	114138226	114138226	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	114138226	114138226	G	A	SNP	DCUN1D2	NM_001014283	human	genbank	57_37b	-1	validated	missense	c.149	p.S50L	0.975	NULL	superfamily_UBA-like,HMMPfam_DUF298	-	no_errors	
DDB1	1642	genome.wustl.edu	37	11	61093120	61093120	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	61093120	61093120	C	T	SNP	DDB1	NM_001923	human	genbank	57_37b	-1	validated	missense	c.725	p.G242D	1.000	NULL	HMMPfam_CPSF_A	-	no_errors	
DMKN	93099	genome.wustl.edu	37	19	35999142	35999142	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	35999142	35999142	C	T	SNP	DMKN	NM_001126056	human	genbank	57_37b	-1	reviewed	missense	c.1039	p.G347S	0.003	NULL	NULL	-	no_errors	
ENSG00000212257	0	genome.wustl.edu	37	1	65488654	65488654	+	RNA	SNP	C	T	T	rs483545	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	65488654	65488654	C	T	SNP	ENSG00000212257	ENST00000390955	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.001	-	-	-		
ENSG00000227097	0	genome.wustl.edu	37	11	82400713	82400713	+	Missense_Mutation	SNP	C	C	T	rs55868869	byCluster	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	82400713	82400713	C	T	SNP	ENSG00000227097	ENST00000440106	human	ensembl	57_37b	+1	known	missense	c.113	p.T38M	1.000	HMMPfam_Ribosomal_S28e,superfamily_Nucleic acid-binding proteins	HMMPfam_Ribosomal_S28e,superfamily_Nucleic acid-binding proteins,PatternScan_RIBOSOMAL_S28E	-		
ENSG00000245882	0	genome.wustl.edu	37	10	135116465	135116465	+	RNA	SNP	G	G	A	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	135116465	135116465	G	A	SNP	ENSG00000245882	ENST00000416038	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.035	-	-	-	no_errors	
ENSG00000247002	0	genome.wustl.edu	37	20	417612	417612	+	RNA	SNP	T	T	C	rs6052005	byCluster;by2Hit2Allele	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	417612	417612	T	C	SNP	ENSG00000247002	ENST00000500967	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
EP400	57634	genome.wustl.edu	37	12	132498069	132498069	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	132498069	132498069	C	T	SNP	EP400	NM_015409	human	genbank	57_37b	+1	validated	missense	c.3643	p.H1215Y	1.000	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N	HMMPfam_HSA,HMMSmart_HSA,superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C,superfamily_Homeodomain_like	-	no_errors	
FAM113B	91523	genome.wustl.edu	37	12	47629963	47629963	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	47629963	47629963	T	A	SNP	FAM113B	NM_138371	human	genbank	57_37b	+1	predicted	missense	c.1117	p.F373I	0.023	NULL	superfamily_SGNH hydrolase	-	no_errors	
FAM86A	196483	genome.wustl.edu	37	16	5139186	5139186	+	Missense_Mutation	SNP	G	G	C	rs12928528	byCluster	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	5139186	5139186	G	C	SNP	FAM86A	NM_201400	human	genbank	57_37b	-1	validated	missense	c.814	p.H272D	0.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_16	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_16	-		
FHAD1	114827	genome.wustl.edu	37	1	15708607	15708607	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	15708607	15708607	C	T	SNP	FHAD1	NM_052929	human	genbank	57_37b	+1	provisional	missense	c.4040	p.A1347V	0.999	NULL	superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA	-	no_errors	
FOLR4	0	genome.wustl.edu	37	11	94040778	94040788	+	Frame_Shift_Del	DEL	CTCTTCGCCAG	CTCTTCGCCAG	-	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	CTCTTCGCCAG	CTCTTCGCCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	94040778	94040788	CTCTTCGCCAG	-	DEL	FOLR4	NM_001080486	human	genbank	57_37b	+1	provisional	frame_shift_del	c.652_662	p.F219fs	0.003:0.002:0.014:0.018:0.012:0.007:0.288:0.315:0.009:0.006:0.000	NULL	HMMPfam_Folate_rec	(deletion:cds_exon[94040590,94040858])	no_errors	
GIGYF1	64599	genome.wustl.edu	37	7	100281768	100281768	+	Silent	SNP	T	T	C	rs221794	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100281768	100281768	T	C	SNP	GIGYF1	NM_022574	human	genbank	57_37b	-1	validated	silent	c.1743	p.P581	0.228	NULL	superfamily_GYF,HMMPfam_GYF,HMMSmart_GYF	-		
GPC1	2817	genome.wustl.edu	37	2	241404499	241404499	+	Nonsense_Mutation	SNP	C	C	T	rs2228327	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	241404499	241404499	C	T	SNP	GPC1	ENST00000420138	human	ensembl	57_37b	+1	known	nonsense	c.1258	p.R420*	0.460	HMMPfam_Glypican	HMMPfam_Glypican,PatternScan_GLYPICAN	-		
GRHL2	79977	genome.wustl.edu	37	8	102570699	102570699	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	102570699	102570699	C	T	SNP	GRHL2	NM_024915	human	genbank	57_37b	+1	reviewed	nonsense	c.337	p.R113*	1.000	NULL	HMMPfam_CP2	-	no_errors	
HMHA1	23526	genome.wustl.edu	37	19	1079959	1079959	+	Missense_Mutation	SNP	G	G	A	rs36084354	byCluster;byFrequency;by1000genomes	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1079959	1079959	G	A	SNP	HMHA1	NM_012292	human	genbank	57_37b	+1	validated	missense	c.1545	p.M515I	1.000	NULL	HMMSmart_FCH,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-		
HSDL2	84263	genome.wustl.edu	37	9	115167969	115167969	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	115167969	115167969	G	C	SNP	HSDL2	NM_032303	human	genbank	57_37b	+1	provisional	missense	c.247	p.A83P	0.000	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_Sterol carrier protein SCP,HMMPfam_SCP2	-	no_errors	
KALRN	8997	genome.wustl.edu	37	3	123988039	123988039	+	Missense_Mutation	SNP	T	T	C	rs2272486	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	123988039	123988039	T	C	SNP	KALRN	ENST00000354186	human	ensembl	57_37b	+1	known	missense	c.833	p.M278T	0.857	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	superfamily_CRAL/TRIO domain,HMMSmart_SM00516,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMSmart_SM00233,HMMPfam_PH,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-		
KIAA1211	57482	genome.wustl.edu	37	4	57182758	57182758	+	Silent	SNP	C	C	T	rs28559894	byCluster;byFrequency;by1000genomes	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	57182758	57182758	C	T	SNP	KIAA1211	NM_020722	human	genbank	57_37b	+1	validated	silent	c.3090	p.D1030	0.007	NULL	NULL	-		
LGI2	55203	genome.wustl.edu	37	4	25005661	25005662	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	25005661	25005662	-	A	INS	LGI2	NM_018176	human	genbank	57_37b	-1	validated	frame_shift_ins	c.1050_1049	p.S351fs	1.000:0.998	HMMPfam_EPTP	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_EPTP	-	no_errors	
LGI2	55203	genome.wustl.edu	37	4	25005663	25005663	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	25005663	25005663	G	A	SNP	LGI2	NM_018176	human	genbank	57_37b	-1	validated	silent	c.1048	p.L350	0.488	HMMPfam_EPTP	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_EPTP	-	no_errors	
LOC100287618	0	genome.wustl.edu	37	17	39092868	39092868	+	Missense_Mutation	SNP	G	G	A	rs2269858	byCluster;byFrequency;by1000genomes	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39092868	39092868	G	A	SNP	LOC100287618	XM_002343552	human	genbank	57_37b	+1	model	missense	c.118	p.V40I	0.102	NULL	NULL	-		
LSM11	134353	genome.wustl.edu	37	5	157178496	157178496	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	157178496	157178496	T	C	SNP	LSM11	NM_173491	human	genbank	57_37b	+1	provisional	missense	c.547	p.C183R	1.000	superfamily_Sm_like_riboprot	superfamily_Sm_like_riboprot,HMMPfam_LSM	-	no_errors	
LSMD1	84316	genome.wustl.edu	37	17	7760397	7760397	+	Silent	SNP	G	G	A	rs4724	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7760397	7760397	G	A	SNP	LSMD1	NM_032356	human	genbank	57_37b	-1	provisional	silent	c.345	p.F115	1.000	superfamily_Sm_like_riboprot,HMMPfam_LSM,HMMSmart_Sm	superfamily_Sm_like_riboprot,HMMPfam_LSM,HMMSmart_Sm	-		
MIR410	0	genome.wustl.edu	37	14	101532265	101532265	+	RNA	SNP	T	T	A	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	101532265	101532265	T	A	SNP	MIR410	ENST00000362222	human	ensembl	57_37b	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	
MTP18	51537	genome.wustl.edu	37	22	30823113	30823113	+	Missense_Mutation	SNP	T	T	G	rs2072160	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	30823113	30823113	T	G	SNP	MTP18	ENST00000412752	human	ensembl	57_37b	+1	known	missense	c.200	p.F67C	0.001	NULL	HMMPfam_MTP18	-		
MUC2	4583	genome.wustl.edu	37	11	1075850	1075850	+	Silent	SNP	G	G	A	rs11825969	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1075850	1075850	G	A	SNP	MUC2	NM_002457	human	genbank	57_37b	+1	reviewed	silent	c.276	p.E92	0.000	HMMSmart_SM00216,HMMPfam_VWD	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMSmart_SM00214,PatternScan_VWFC_1,PatternScan_EGF_1,HMMPfam_VWC,HMMPfam_Cys_knot,HMMSmart_SM00041,PatternScan_CTCK_1	-		
NCOR1	9611	genome.wustl.edu	37	17	15983302	15983302	+	Silent	SNP	T	T	A	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	15983302	15983302	T	A	SNP	NCOR1	NM_006311	human	genbank	57_37b	-1	reviewed	silent	c.3477	p.P1159	0.525	NULL	superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	-	no_errors	
NPLOC4	55666	genome.wustl.edu	37	17	79526402	79526402	+	Silent	SNP	G	G	C	rs4073997	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79526402	79526402	G	C	SNP	NPLOC4	NM_017921	human	genbank	57_37b	-1	validated	silent	c.1710	p.G570	0.155	NULL	HMMPfam_zf-NPL4,HMMPfam_NPL4,superfamily_NZF domain,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1	-		
OPN4	94233	genome.wustl.edu	37	10	88414569	88414569	+	Missense_Mutation	SNP	C	C	T	rs2675703	byCluster;byFrequency;by1000genomes	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	88414569	88414569	C	T	SNP	OPN4	NM_001030015	human	genbank	57_37b	+1	validated	missense	c.29	p.P10L	0.000	NULL	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_OPSIN	-		
OR2C3	81472	genome.wustl.edu	37	1	247695646	247695646	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247695646	247695646	G	A	SNP	OR2C3	NM_198074	human	genbank	57_37b	-1	validated	silent	c.168	p.L56	0.999	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR4A15	81328	genome.wustl.edu	37	11	55136222	55136222	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55136222	55136222	G	T	SNP	OR4A15	NM_001005275	human	genbank	57_37b	+1	provisional	missense	c.863	p.R288M	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR4D10	390197	genome.wustl.edu	37	11	59245446	59245446	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	59245446	59245446	C	T	SNP	OR4D10	NM_001004705	human	genbank	57_37b	+1	provisional	missense	c.544	p.H182Y	0.587	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
P2RY1	5028	genome.wustl.edu	37	3	152554206	152554206	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	152554206	152554206	G	A	SNP	P2RY1	NM_002563	human	genbank	57_37b	+1	reviewed	missense	c.635	p.R212Q	0.999	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PDIA2	64714	genome.wustl.edu	37	16	336916	336916	+	Missense_Mutation	SNP	C	C	T	rs1048786	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	336916	336916	C	T	SNP	PDIA2	NM_006849	human	genbank	57_37b	+1	validated	missense	c.1504	p.P502S	0.997	NULL	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1,PatternScan_ER_TARGET	-		
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936074	178936074	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936074	178936074	C	G	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1616	p.P539R	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PQLC2	54896	genome.wustl.edu	37	1	19652874	19652874	+	Missense_Mutation	SNP	G	A	A	rs41264079	byCluster;by1000genomes	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	19652874	19652874	G	A	SNP	PQLC2	NM_001040125	human	genbank	57_37b	+1	validated	missense	c.518	p.G173D	0.000	NULL	HMMPfam_PQ-loop,HMMSmart_SM00679	-		
RARS	5917	genome.wustl.edu	37	5	167927622	167927622	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	167927622	167927622	G	C	SNP	RARS	NM_002887	human	genbank	57_37b	+1	reviewed	missense	c.849	p.E283D	0.969	HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase	superfamily_Arginyl-tRNA synthetase (ArgRS) N-terminal 'additional' domain,HMMPfam_Arg_tRNA_synt_N,HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase,PatternScan_AA_TRNA_LIGASE_I,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_DALR_1	-	no_errors	
RHAG	6005	genome.wustl.edu	37	6	49580246	49580246	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	49580246	49580246	A	G	SNP	RHAG	NM_000324	human	genbank	57_37b	-1	reviewed	missense	c.809	p.V270A	1.000	HMMPfam_Ammonium_transp,superfamily_RH_like_transpt	HMMPfam_Ammonium_transp,superfamily_RH_like_transpt	-	no_errors	
RNF41	10193	genome.wustl.edu	37	12	56604349	56604349	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56604349	56604349	G	A	SNP	RNF41	NM_005785	human	genbank	57_37b	-1	reviewed	missense	c.94	p.P32S	1.000	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_TRAF domain-like,HMMPfam_USP8_interact	-	no_errors	
RNLS	55328	genome.wustl.edu	37	10	90332770	90332772	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	90332770	90332772	TCT	-	DEL	RNLS	NM_001031709	human	genbank	57_37b	-1	validated	in_frame_del	c.416_414	p.RD138in_frame_delS	0.035:0.010:0.007	superfamily_FAD/NAD(P)-binding domain	HMMPfam_FAD_binding_3,superfamily_FAD/NAD(P)-binding domain	(deletion:cds_exon[90332660,90332818])	no_errors	
RPP38	10557	genome.wustl.edu	37	10	15145342	15145342	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	15145342	15145342	G	A	SNP	RPP38	NM_001097590	human	genbank	57_37b	+1	validated	missense	c.29	p.R10Q	0.538	NULL	superfamily_SSF55315,HMMPfam_Ribosomal_L7Ae	-	no_errors	
RREB1	6239	genome.wustl.edu	37	6	7246998	7246998	+	Missense_Mutation	SNP	G	G	A	rs2281833	byCluster;byFrequency;by1000genomes	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	7246998	7246998	G	A	SNP	RREB1	NM_001003699	human	genbank	57_37b	+1	reviewed	missense	c.4315	p.G1439R	0.000	NULL	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-		
RYR2	6262	genome.wustl.edu	37	1	237608771	237608771	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	237608771	237608771	G	A	SNP	RYR2	NM_001035	human	genbank	57_37b	+1	reviewed	missense	c.1241	p.R414H	0.988	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors	
SERPINE3	0	genome.wustl.edu	37	13	51922387	51922387	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	51922387	51922387	C	A	SNP	SERPINE3	NM_001101320	human	genbank	57_37b	+1	validated	missense	c.739	p.L247M	0.996	superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093	superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN	-	no_errors	
SH3TC1	54436	genome.wustl.edu	37	4	8207083	8207083	+	Silent	SNP	A	A	G	rs2677605	byCluster;byFrequency;by1000genomes	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	8207083	8207083	A	G	SNP	SH3TC1	NM_018986	human	genbank	57_37b	+1	validated	silent	c.162	p.P54	0.000	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	-		
SLC6A5	9152	genome.wustl.edu	37	11	20623042	20623042	+	Missense_Mutation	SNP	T	T	C	rs1443548	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	20623042	20623042	T	C	SNP	SLC6A5	NM_004211	human	genbank	57_37b	+1	reviewed	missense	c.371	p.F124S	0.937	NULL	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2,PatternScan_ASP_GLU_RACEMASE_1	-		
SORCS3	22986	genome.wustl.edu	37	10	106974227	106974227	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	106974227	106974227	C	T	SNP	SORCS3	NM_014978	human	genbank	57_37b	+1	reviewed	silent	c.2403	p.C801	1.000	HMMSmart_VPS10	superfamily_SSF110296,HMMSmart_VPS10,HMMPfam_PKD,superfamily_PKD	-	no_errors	
SPEN	23013	genome.wustl.edu	37	1	16257012	16257012	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16257012	16257012	T	A	SNP	SPEN	NM_015001	human	genbank	57_37b	+1	reviewed	nonsense	c.4277	p.L1426*	1.000	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SPOC-like,HMMPfam_SPOC	-	no_errors	
TACC3	10460	genome.wustl.edu	37	4	1729953	1729953	+	Missense_Mutation	SNP	G	G	A	rs17132047	byCluster;by1000genomes	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	1729953	1729953	G	A	SNP	TACC3	NM_006342	human	genbank	57_37b	+1	reviewed	missense	c.824	p.C275Y	0.000	NULL	HMMPfam_TACC	-		
TBL3	10607	genome.wustl.edu	37	16	2028402	2028402	+	Silent	SNP	A	A	C	rs8460	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2028402	2028402	A	C	SNP	TBL3	NM_006453	human	genbank	57_37b	+1	reviewed	silent	c.2223	p.R741	0.875	HMMPfam_Utp13	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_Utp13	-		
TMEM151B	441151	genome.wustl.edu	37	6	44241139	44241139	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	44241139	44241139	C	T	SNP	TMEM151B	NM_001137560	human	genbank	57_37b	+1	validated	nonsense	c.472	p.Q158*	1.000	NULL	NULL	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179585182	179585182	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179585182	179585182	G	A	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	silent	c.19575	p.V6525	0.069	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
UBE2E3	10477	genome.wustl.edu	37	2	181925537	181925537	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RO-01A-22D-A099-09	TCGA-B6-A0RO-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	181925537	181925537	C	T	SNP	UBE2E3	NM_006357	human	genbank	57_37b	+1	reviewed	missense	c.524	p.P175L	1.000	superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con	superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con,PatternScan_UBIQUITIN_CONJUGAT_1	-	no_errors	
