Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCC6	368	genome.wustl.edu	37	16	16315440	16315440	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	16315440	16315440	G	C	SNP	ABCC6	NM_001079528	human	genbank	57_37b	-1	reviewed	missense	c.285	p.N95K	0.005	NULL	NULL	-	no_errors	
ACSF2	80221	genome.wustl.edu	37	17	48548486	48548487	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48548486	48548487	CT	-	DEL	ACSF2	NM_025149	human	genbank	57_37b	+1	validated	frame_shift_del	c.1313_1314	p.T440fs	0.987:0.969	superfamily_SSF56801,HMMPfam_AMP-binding	superfamily_SSF56801,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	(deletion:cds_exon[48548389,48548496])	no_errors	
ACTL6B	51412	genome.wustl.edu	37	7	100246265	100246265	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100246265	100246265	C	-	DEL	ACTL6B	NM_016188	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.583	p.A195fs	1.000	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067	HMMPfam_Actin,superfamily_SSF53067,HMMSmart_ACTIN,PatternScan_ACTINS_2	(deletion:cds_exon[100246179,100246285])	no_errors	
ARHGAP5	394	genome.wustl.edu	37	14	32560757	32560757	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	32560757	32560757	T	A	SNP	ARHGAP5	NM_001030055	human	genbank	57_37b	+1	reviewed	missense	c.882	p.S294R	1.000	HMMSmart_SM00441,HMMPfam_FF	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00441,HMMPfam_FF,superfamily_FF domain,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
BMX	660	genome.wustl.edu	37	X	15568080	15568080	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	15568080	15568080	C	T	SNP	BMX	NM_001721	human	genbank	57_37b	+1	reviewed	missense	c.1913	p.S638L	0.055	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_BTK,HMMPfam_BTK,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
C20orf26	26074	genome.wustl.edu	37	20	20269354	20269354	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	20269354	20269354	C	A	SNP	C20orf26	NM_015585	human	genbank	57_37b	+1	validated	missense	c.2898	p.N966K	0.030	superfamily_FAD/NAD(P)-binding domain	superfamily_Acyl-CoA N-acyltransferases (Nat),superfamily_FAD/NAD(P)-binding domain	-	no_errors	
C4orf21	55345	genome.wustl.edu	37	4	113539671	113539671	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	113539671	113539671	A	T	SNP	C4orf21	ENST00000309071	human	ensembl	57_37b	-1	known	missense	c.1527	p.D509E	0.000	NULL	HMMPfam_DUF2439	-	no_errors	
CACNA1E	777	genome.wustl.edu	37	1	181688931	181688931	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	181688931	181688931	A	C	SNP	CACNA1E	NM_000721	human	genbank	57_37b	+1	reviewed	missense	c.1683	p.R561S	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors	
CD248	57124	genome.wustl.edu	37	11	66082629	66082629	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66082629	66082629	G	A	SNP	CD248	NM_020404	human	genbank	57_37b	-1	validated	nonsense	c.1870	p.Q624*	0.405	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2,HMMSmart_SM00179,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL	-	no_errors	
CD3E	916	genome.wustl.edu	37	11	118185202	118185202	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118185202	118185202	A	G	SNP	CD3E	NM_000733	human	genbank	57_37b	+1	reviewed	missense	c.560	p.D187G	1.000	HMMPfam_ITAM,HMMSmart_SM00077	superfamily_Immunoglobulin,HMMSmart_SM00408,HMMPfam_ITAM,HMMSmart_SM00077	-	no_errors	
CELSR3	1951	genome.wustl.edu	37	3	48697354	48697354	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	48697354	48697354	C	T	SNP	CELSR3	NM_001407	human	genbank	57_37b	-1	reviewed	missense	c.2714	p.R905H	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00179,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_ASX_HYDROXYL,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	
CLASP1	23332	genome.wustl.edu	37	2	122106150	122106152	+	In_Frame_Del	DEL	CGA	CGA	-	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	CGA	CGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	122106150	122106152	CGA	-	DEL	CLASP1	NM_015282	human	genbank	57_37b	-1	validated	in_frame_del	c.4351_4349	p.V1450in_frame_del	1.000:0.564:0.985	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	(deletion:cds_exon[122106088,122106294])	no_errors	
CNBD1	168975	genome.wustl.edu	37	8	88249321	88249321	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	88249321	88249321	T	A	SNP	CNBD1	NM_173538	human	genbank	57_37b	+1	provisional	missense	c.752	p.L251Q	0.000	superfamily_cNMP_binding	PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,HMMPfam_cNMP_binding	-	no_errors	
CNNM2	54805	genome.wustl.edu	37	10	104816543	104816543	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	104816543	104816543	T	C	SNP	CNNM2	ENST00000457502	human	ensembl	57_37b	+1	known	missense	c.1898	p.I633T	1.000	NULL	HMMPfam_DUF21,HMMPfam_CBS	-	no_errors	
COG5	10466	genome.wustl.edu	37	7	106877126	106877126	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	106877126	106877126	T	A	SNP	COG5	NM_006348	human	genbank	57_37b	-1	validated	missense	c.1953	p.L651F	0.001	NULL	HMMPfam_COG5	-	no_errors	
CSNK1E	1454	genome.wustl.edu	37	22	38694855	38694855	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	38694855	38694855	C	T	SNP	CSNK1E	NM_001894	human	genbank	57_37b	-1	reviewed	missense	c.821	p.R274H	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
DNAH17	8632	genome.wustl.edu	37	17	76490785	76490785	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	76490785	76490785	A	C	SNP	DNAH17	ENST00000389840	human	ensembl	57_37b	-1	known	missense	c.6118	p.F2040V	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,PatternScan_WD_REPEATS_1,HMMPfam_Dynein_heavy	-	no_errors	
EIF4ENIF1	56478	genome.wustl.edu	37	22	31867874	31867874	+	Silent	SNP	G	G	C	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	31867874	31867874	G	C	SNP	EIF4ENIF1	NM_019843	human	genbank	57_37b	-1	reviewed	silent	c.126	p.P42	0.985	HMMPfam_EIF4E-T	HMMPfam_EIF4E-T	-	no_errors	
ENSG00000232429	0	genome.wustl.edu	37	19	34080511	34080511	+	Silent	SNP	G	G	C	rs12609032	byCluster;byFrequency;byHapMap	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	34080511	34080511	G	C	SNP	ENSG00000232429	ENST00000418275	human	ensembl	57_37b	-1	known	silent	c.84	p.A28	1.000	HMMPfam_Ribosomal_L21e,superfamily_Translation proteins SH3-like domain	HMMPfam_Ribosomal_L21e,superfamily_Translation proteins SH3-like domain	-		
ENSG00000244863	0	genome.wustl.edu	37	7	44116764	44116764	+	RNA	SNP	T	C	C	rs10270623	byCluster;byFrequency;by1000genomes	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	44116764	44116764	T	C	SNP	ENSG00000244863	ENST00000501293	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
ENSG00000246539	0	genome.wustl.edu	37	6	42194440	42194440	+	RNA	SNP	C	A	A	rs9394889	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42194440	42194440	C	A	SNP	ENSG00000246539	ENST00000501418	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
ENSG00000247516	0	genome.wustl.edu	37	5	8451757	8451757	+	RNA	SNP	G	A	A	rs6860832	byCluster;byFrequency;by1000genomes	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	8451757	8451757	G	A	SNP	ENSG00000247516	ENST00000501556	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.001	-	-	-		
ENSG00000248072	0	genome.wustl.edu	37	15	89047338	89047338	+	RNA	SNP	T	C	C	rs7163110	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	89047338	89047338	T	C	SNP	ENSG00000248072	ENST00000501668	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.008	-	-	-		
FABP6	2172	genome.wustl.edu	37	5	159656619	159656619	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	159656619	159656619	A	C	SNP	FABP6	NM_001040442	human	genbank	57_37b	+1	reviewed	missense	c.202	p.M68L	0.999	superfamily_Calycin,HMMPfam_Lipocalin,PatternScan_FABP	superfamily_Calycin,HMMPfam_Lipocalin,PatternScan_FABP	-	no_errors	
HIRA	7290	genome.wustl.edu	37	22	19349295	19349295	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	19349295	19349295	C	T	SNP	HIRA	NM_003325	human	genbank	57_37b	-1	reviewed	silent	c.1935	p.R645	0.951	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_HIRA_B,HMMPfam_Hira	-	no_errors	
HLTF	6596	genome.wustl.edu	37	3	148793804	148793806	+	In_Frame_Del	DEL	GTT	GTT	-	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	GTT	GTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	148793804	148793806	GTT	-	DEL	HLTF	NM_003071	human	genbank	57_37b	-1	reviewed	in_frame_del	c.259_257	p.Q86in_frame_del	1.000:1.000:1.000	HMMPfam_HIRAN	HMMPfam_HIRAN,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SNF2_N,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMSmart_SM00490,HMMPfam_Helicase_C	(deletion:cds_exon[148793668,148793834])	no_errors	
IGSF5	150084	genome.wustl.edu	37	21	41137704	41137704	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	41137704	41137704	C	-	DEL	IGSF5	NM_001080444	human	genbank	57_37b	+1	provisional	frame_shift_del	c.343	p.S116fs	0.002	HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG	HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG	(deletion:cds_exon[41137462,41137779])	no_errors	
IQCA1L	0	genome.wustl.edu	37	7	150892560	150892560	+	RNA	SNP	T	T	C	rs61733954	byCluster;byFrequency;by1000genomes	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150892560	150892560	T	C	SNP	IQCA1L	XR_041603	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.056	-	-	-		
ITGA1	3672	genome.wustl.edu	37	5	52211349	52211349	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	52211349	52211349	A	G	SNP	ITGA1	NM_181501	human	genbank	57_37b	+1	reviewed	missense	c.1913	p.H638R	0.999	superfamily_SSF69318,HMMSmart_Int_alpha	superfamily_SSF69318,HMMSmart_Int_alpha,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA	-	no_errors	
LOC100128006	0	genome.wustl.edu	37	17	12665473	12665473	+	RNA	SNP	G	C	C	rs35408395	byCluster;byFrequency;by1000genomes	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	12665473	12665473	G	C	SNP	LOC100128006	XR_078523	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.004	-	-	-		
LOC100129633	0	genome.wustl.edu	37	9	117483943	117483943	+	Missense_Mutation	SNP	G	G	A	rs7026324	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	117483943	117483943	G	A	SNP	LOC100129633	XM_001718491	human	genbank	57_37b	-1	model	missense	c.422	p.A141V	0.000	NULL	superfamily_Ribosomal protein L30p/L7e	-		
LOC100133321	0	genome.wustl.edu	37	12	62627806	62627806	+	RNA	SNP	T	C	C	rs1907971	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	62627806	62627806	T	C	SNP	LOC100133321	XR_078462	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.007	-	-	-		
LOC100289403	0	genome.wustl.edu	37	X	48459751	48459751	+	Nonsense_Mutation	SNP	G	T	T	rs235845	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48459751	48459751	G	T	SNP	LOC100289403	XM_002343810	human	genbank	57_37b	-1	model	nonsense	c.405	p.Y135*	0.000	NULL	NULL	-		
LOC100290372	0	genome.wustl.edu	37	6	4399612	4399613	+	Missense_Mutation	DNP	TG	GC	GC	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	4399612	4399613	TG	GC	SNP	LOC100290372	XM_002346747	human	genbank	57_37b	-1	model	missense	c.1519-c.1518	p.K507Q-p.N506K	0.030	NULL	NULL	-		
LOC100290623	0	genome.wustl.edu	37	X	816304	816304	+	Missense_Mutation	SNP	C	A	A	rs17537524	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	816304	816304	C	A	SNP	LOC100290623	XM_002348129	human	genbank	57_37b	-1	model	missense	c.7	p.V3F	0.000	NULL	NULL	-		
LOC100291665	0	genome.wustl.edu	37	7	4192637	4192637	+	RNA	SNP	T	T	A	rs651841	byCluster;byFrequency;by1000genomes	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	4192637	4192637	T	A	SNP	LOC100291665	XR_079015	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.000	-	-	-		
LOC100292054	0	genome.wustl.edu	37	1	798026	798026	+	Silent	SNP	C	T	T	rs4951864	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	798026	798026	C	T	SNP	LOC100292054	XM_002345285	human	genbank	57_37b	+1	model	silent	c.747	p.T249	0.005	NULL	PatternScan_ZF_RING_1	-		
LOC100293008	0	genome.wustl.edu	37	8	22664798	22664798	+	RNA	SNP	A	C	C	rs11985147	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	22664798	22664798	A	C	SNP	LOC100293008	XR_079050	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.000	-	-	-		
LOC100294141	0	genome.wustl.edu	37	6	3081579	3081579	+	RNA	SNP	G	A	A	rs11242823	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	3081579	3081579	G	A	SNP	LOC100294141	XR_078640	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.000	-	-	-		
LOC100294305	0	genome.wustl.edu	37	6	1449289	1449289	+	Silent	SNP	T	C	C	rs2816240	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	1449289	1449289	T	C	SNP	LOC100294305	XM_002344037	human	genbank	57_37b	+1	model	silent	c.57	p.F19	0.000	NULL	NULL	-		
LOC729501	729501	genome.wustl.edu	37	13	19042402	19042402	+	Silent	SNP	C	T	T	rs1747386	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	19042402	19042402	C	T	SNP	LOC729501	XM_002343229	human	genbank	57_37b	-1	model	silent	c.1680	p.K560	0.992	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-		
MED27	9442	genome.wustl.edu	37	9	134952894	134952907	+	Frame_Shift_Del	DEL	CCAGGCTTAACAGC	CCAGGCTTAACAGC	-	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	CCAGGCTTAACAGC	CCAGGCTTAACAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	134952894	134952907	CCAGGCTTAACAGC	-	DEL	MED27	NM_004269	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.283_270	p.L91fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.984:1.000:1.000:1.000:1.000:0.983:0.129	NULL	NULL	(deletion:cds_exon[134952829,134952973])	no_errors	
MORC2	22880	genome.wustl.edu	37	22	31336819	31336819	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	31336819	31336819	T	C	SNP	MORC2	NM_014941	human	genbank	57_37b	-1	provisional	missense	c.644	p.Y215C	1.000	superfamily_ATP_bd_ATPase	superfamily_ATP_bd_ATPase,HMMPfam_zf-CW	-	no_errors	
MTR	4548	genome.wustl.edu	37	1	237023140	237023140	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	237023140	237023140	G	C	SNP	MTR	NM_000254	human	genbank	57_37b	+1	reviewed	missense	c.1961	p.G654A	0.831	NULL	superfamily_Homocysteine S-methyltransferase,HMMPfam_S-methyl_trans,HMMPfam_Pterin_bind,superfamily_Dihydropteroate synthetase-like,superfamily_Methionine synthase domain,HMMPfam_B12-binding_2,superfamily_Cobalamin (vitamin B12)-binding domain,HMMPfam_B12-binding,superfamily_Methionine synthase activation domain-like,HMMPfam_Met_synt_B12	-	no_errors	
MUC17	140453	genome.wustl.edu	37	7	100686212	100686212	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100686212	100686212	C	T	SNP	MUC17	NM_001040105	human	genbank	57_37b	+1	provisional	missense	c.11515	p.P3839S	0.029	NULL	superfamily_EGF/Laminin,PatternScan_EGF_1,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors	
MUC21	394263	genome.wustl.edu	37	6	30954150	30954150	+	Silent	SNP	C	C	T	rs118044183	by1000genomes	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	30954150	30954150	C	T	SNP	MUC21	NM_001010909	human	genbank	57_37b	+1	validated	silent	c.198	p.S66	0.000	NULL	NULL	-		
PALM2	114299	genome.wustl.edu	37	9	112705127	112705127	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	112705127	112705127	G	A	SNP	PALM2	NM_053016	human	genbank	57_37b	+1	validated	missense	c.664	p.V222I	0.289	HMMPfam_Paralemmin	HMMPfam_Paralemmin	-	no_errors	
PATE4	0	genome.wustl.edu	37	11	125708299	125708299	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	125708299	125708299	A	G	SNP	PATE4	NM_001144874	human	genbank	57_37b	+1	validated	missense	c.274	p.R92G	0.040	NULL	NULL	-	no_errors	
PCDHA10	56139	genome.wustl.edu	37	5	140235801	140235801	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140235801	140235801	G	A	SNP	PCDHA10	NM_018901	human	genbank	57_37b	+1	reviewed	silent	c.168	p.A56	0.000	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
POLQ	10721	genome.wustl.edu	37	3	121158894	121158894	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	121158894	121158894	C	A	SNP	POLQ	NM_199420	human	genbank	57_37b	-1	validated	missense	c.7334	p.G2445V	1.000	superfamily_DNA/RNA polymerases,HMMPfam_DNA_pol_A,HMMSmart_SM00482	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Ribonuclease H-like,superfamily_DNA/RNA polymerases,HMMPfam_DNA_pol_A,HMMSmart_SM00482,PatternScan_DNA_POLYMERASE_A	-	no_errors	
ROBO2	6092	genome.wustl.edu	37	3	77612343	77612343	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	77612343	77612343	C	T	SNP	ROBO2	NM_002942	human	genbank	57_37b	+1	reviewed	silent	c.1545	p.N515	1.000	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
RPGR	6103	genome.wustl.edu	37	X	38145194	38145196	+	In_Frame_Del	DEL	CCC	CCC	-	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	CCC	CCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	38145194	38145196	CCC	-	DEL	RPGR	NM_001034853	human	genbank	57_37b	-1	reviewed	in_frame_del	c.3058_3056	p.G1019in_frame_del	0.009:0.000:0.000	NULL	superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1	(deletion:cds_exon[38144793,38146498])	no_errors	
SAGE1	55511	genome.wustl.edu	37	X	134986704	134986704	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	134986704	134986704	T	C	SNP	SAGE1	NM_018666	human	genbank	57_37b	+1	reviewed	silent	c.289	p.L97	0.023	NULL	NULL	-	no_errors	
SILV	6490	genome.wustl.edu	37	12	56349080	56349080	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56349080	56349080	C	-	DEL	SILV	NM_006928	human	genbank	57_37b	-1	validated	frame_shift_del	c.1828	p.V610fs	0.972	NULL	superfamily_PKD domain,HMMPfam_PKD,HMMSmart_SM00089	(deletion:cds_exon[56349058,56349145])	no_errors	
SLC25A13	10165	genome.wustl.edu	37	7	95751180	95751180	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	95751180	95751180	C	-	DEL	SLC25A13	NM_014251	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1721	p.G574fs	1.000	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	PatternScan_EF_HAND_1,superfamily_SSF47473,HMMSmart_EFh,superfamily_Mitoch_carrier,HMMPfam_Mito_carr	(deletion:cds_exon[95751151,95751309])	no_errors	
TACC2	10579	genome.wustl.edu	37	10	123988915	123988915	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	123988915	123988915	C	T	SNP	TACC2	NM_206862	human	genbank	57_37b	+1	reviewed	missense	c.7951	p.H2651Y	0.852	NULL	HMMPfam_TACC	-	no_errors	
TEX14	56155	genome.wustl.edu	37	17	56679891	56679891	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56679891	56679891	T	A	SNP	TEX14	NM_198393	human	genbank	57_37b	-1	reviewed	missense	c.1397	p.N466I	1.000	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578263	7578263	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578263	7578263	G	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	nonsense	c.586	p.R196*	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
TSC22D3	1831	genome.wustl.edu	37	X	106959960	106959960	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	106959960	106959960	G	A	SNP	TSC22D3	NM_004089	human	genbank	57_37b	-1	reviewed	silent	c.82	p.L28	0.999	NULL	PatternScan_TSC22,HMMPfam_TSC22	-	no_errors	
TTC4	7268	genome.wustl.edu	37	1	55188450	55188450	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	55188450	55188450	G	C	SNP	TTC4	NM_004623	human	genbank	57_37b	+1	validated	missense	c.572	p.R191T	1.000	superfamily_SSF48452	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452	-	no_errors	
UNC5D	137970	genome.wustl.edu	37	8	35608151	35608151	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	35608151	35608151	C	A	SNP	UNC5D	NM_080872	human	genbank	57_37b	+1	validated	missense	c.1987	p.P663T	1.000	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,PatternScan_SERPIN,HMMPfam_ZU5,HMMSmart_SM00218,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death	-	no_errors	
UTRN	7402	genome.wustl.edu	37	6	144768443	144768443	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	144768443	144768443	C	T	SNP	UTRN	NM_007124	human	genbank	57_37b	+1	reviewed	nonsense	c.1711	p.R571*	0.999	superfamily_Spectrin,HMMSmart_SPEC	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_SSF47473,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1	-	no_errors	
VPS11	55823	genome.wustl.edu	37	11	118948934	118948934	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118948934	118948934	A	-	DEL	VPS11	ENST00000300793	human	ensembl	57_37b	+1	known	frame_shift_del	c.1810	p.A605fs	1.000	NULL	superfamily_WD40 repeat-like,superfamily_ARM repeat,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	(deletion:cds_exon[118948883,118949044])	no_errors	
ZNF781	163115	genome.wustl.edu	37	19	38160608	38160608	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RU-01A-11D-A099-09	TCGA-B6-A0RU-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38160608	38160608	G	A	SNP	ZNF781	NM_152605	human	genbank	57_37b	-1	validated	nonsense	c.442	p.Q148*	0.001	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
