Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCC12	94160	genome.wustl.edu	37	16	48149418	48149418	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	48149418	48149418	C	T	SNP	ABCC12	NM_033226	human	genbank	57_37b	-1	reviewed	missense	c.1897	p.V633M	0.994	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ABL1	25	genome.wustl.edu	37	9	133750254	133750254	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	133750254	133750254	G	C	SNP	ABL1	NM_007313	human	genbank	57_37b	+1	reviewed	splice_site	c.1143-1	e7-1	1.000	-	-	-	no_errors	
ADCY2	108	genome.wustl.edu	37	5	7802447	7802447	+	Silent	SNP	C	C	G	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	7802447	7802447	C	G	SNP	ADCY2	NM_020546	human	genbank	57_37b	+1	reviewed	silent	c.2745	p.L915	0.999	HMMSmart_CYCc,HMMPfam_Guanylate_cyc,superfamily_A/G_cyclase	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053	-	no_errors	
ADD1	118	genome.wustl.edu	37	4	2930220	2930220	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	2930220	2930220	G	A	SNP	ADD1	NM_014189	human	genbank	57_37b	+1	reviewed	silent	c.2277	p.L759	1.000	NULL	superfamily_Aldolase_II_N,HMMPfam_Aldolase_II	-	no_errors	
AKAP9	10142	genome.wustl.edu	37	7	91712715	91712715	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	91712715	91712715	C	G	SNP	AKAP9	NM_005751	human	genbank	57_37b	+1	reviewed	missense	c.8392	p.L2798V	0.124	NULL	PatternScan_CPSASE_2,HMMPfam_PACT_coil_coil	-	no_errors	
ALOX12	239	genome.wustl.edu	37	17	6902773	6902773	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	6902773	6902773	G	C	SNP	ALOX12	NM_000697	human	genbank	57_37b	+1	validated	missense	c.795	p.E265D	0.981	superfamily_Lipoxygenase,HMMPfam_Lipoxygenase	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase,superfamily_Lipoxygenase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_1,PatternScan_LIPOXYGENASE_2	-	no_errors	
ANAPC7	51434	genome.wustl.edu	37	12	110832986	110832986	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	110832986	110832986	C	T	SNP	ANAPC7	NM_016238	human	genbank	57_37b	-1	reviewed	missense	c.430	p.E144K	1.000	superfamily_TPR-like	superfamily_TPR-like,HMMSmart_SM00028,HMMPfam_TPR_1	-	no_errors	
ARID2	196528	genome.wustl.edu	37	12	46211464	46211464	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	46211464	46211464	C	T	SNP	ARID2	NM_152641	human	genbank	57_37b	+1	validated	nonsense	c.430	p.Q144*	1.000	NULL	"HMMPfam_ARID,superfamily_ARID-like,HMMSmart_SM00501,superfamily_""Winged helix"" DNA-binding domain,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors	
ATM	472	genome.wustl.edu	37	11	108186737	108186737	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	108186737	108186737	G	A	SNP	ATM	NM_000051	human	genbank	57_37b	+1	reviewed	splice_site	c.6096-1	e41-1	1.000	-	-	-	no_errors	
C14orf38	729665	genome.wustl.edu	37	14	60031832	60031832	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	60031832	60031832	T	C	SNP	C14orf38	ENST00000281581	human	ensembl	57_37b	-1	known	missense	c.653	p.E218G	0.007	NULL	NULL	-	no_errors	
C17orf81	23587	genome.wustl.edu	37	17	7158001	7158001	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7158001	7158001	G	C	SNP	C17orf81	NM_015362	human	genbank	57_37b	+1	validated	missense	c.336	p.K112N	0.000	HMMPfam_Hap2_elong	HMMPfam_Hap2_elong	-	no_errors	
C7orf66	154907	genome.wustl.edu	37	7	108524578	108524578	+	Silent	SNP	C	C	G	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	108524578	108524578	C	G	SNP	C7orf66	NM_001024607	human	genbank	57_37b	-1	predicted	silent	c.12	p.V4	0.000	NULL	NULL	-	no_errors	
CACNA1D	776	genome.wustl.edu	37	3	53839094	53839094	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	53839094	53839094	C	T	SNP	CACNA1D	NM_000720	human	genbank	57_37b	+1	validated	silent	c.5730	p.F1910	1.000	NULL	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors	
CACNA1G	8913	genome.wustl.edu	37	17	48681624	48681624	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48681624	48681624	C	T	SNP	CACNA1G	NM_018896	human	genbank	57_37b	+1	validated	silent	c.4278	p.F1426	0.997	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors	
CDK1	0	genome.wustl.edu	37	10	62553685	62553685	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	62553685	62553685	G	A	SNP	CDK1	NM_001786	human	genbank	57_37b	+1	reviewed	silent	c.846	p.L282	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
CST5	1473	genome.wustl.edu	37	20	23860130	23860130	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	23860130	23860130	C	T	SNP	CST5	NM_001900	human	genbank	57_37b	-1	reviewed	missense	c.184	p.D62N	0.001	HMMSmart_CY,HMMPfam_Cystatin,superfamily_SSF54403	HMMSmart_CY,HMMPfam_Cystatin,superfamily_SSF54403,PatternScan_CYSTATIN	-	no_errors	
DNALI1	7802	genome.wustl.edu	37	1	38024964	38024964	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	38024964	38024964	G	-	DEL	DNALI1	NM_003462	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.330	p.V111fs	1.000	HMMPfam_Ax_dynein_light	HMMPfam_Ax_dynein_light	(deletion:cds_exon[38024928,38025097])	no_errors	
ENSG00000246830	0	genome.wustl.edu	37	1	23834486	23834486	+	RNA	SNP	G	A	A	rs3820028	byCluster;byFrequency;by1000genomes	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	23834486	23834486	G	A	SNP	ENSG00000246830	ENST00000500280	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000247816	0	genome.wustl.edu	37	17	78427740	78427740	+	RNA	SNP	C	T	T	rs7211327	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	78427740	78427740	C	T	SNP	ENSG00000247816	ENST00000500255	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
EXOC3	11336	genome.wustl.edu	37	5	446329	446329	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	446329	446329	G	A	SNP	EXOC3	NM_007277	human	genbank	57_37b	+1	reviewed	silent	c.9	p.E3	1.000	NULL	HMMPfam_Sec6	-	no_errors	
FAM75C1	441452	genome.wustl.edu	37	9	90535186	90535186	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	90535186	90535186	G	C	SNP	FAM75C1	NM_001145124	human	genbank	57_37b	+1	validated	missense	c.364	p.E122Q	0.001	NULL	NULL	-	no_errors	
FAR1	84188	genome.wustl.edu	37	11	13721953	13721953	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	13721953	13721953	C	T	SNP	FAR1	NM_032228	human	genbank	57_37b	+1	validated	silent	c.279	p.L93	0.730	superfamily_NAD(P)-bd,HMMPfam_NAD_binding_4	superfamily_NAD(P)-bd,HMMPfam_NAD_binding_4,HMMPfam_Sterile	-	no_errors	
FRMPD2	143162	genome.wustl.edu	37	10	49379163	49379163	+	Silent	SNP	G	G	C	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	49379163	49379163	G	C	SNP	FRMPD2	NM_001018071	human	genbank	57_37b	-1	reviewed	silent	c.3312	p.L1104	0.000	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	HMMSmart_SM00750,superfamily_Ubiquitin-like,HMMSmart_SM00295,HMMPfam_FERM_N,superfamily_Second domain of FERM,HMMPfam_FERM_M,superfamily_PH domain-like,HMMPfam_FERM_C,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors	
GMDS	2762	genome.wustl.edu	37	6	2124947	2124947	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	2124947	2124947	C	G	SNP	GMDS	NM_001500	human	genbank	57_37b	-1	validated	missense	c.121	p.E41Q	1.000	superfamily_NAD(P)-bd,HMMPfam_Epimerase	superfamily_NAD(P)-bd,HMMPfam_Epimerase	-	no_errors	
GRIA1	2890	genome.wustl.edu	37	5	153065794	153065794	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	153065794	153065794	G	C	SNP	GRIA1	NM_000827	human	genbank	57_37b	+1	reviewed	missense	c.1039	p.E347Q	1.000	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors	
HIPK1	204851	genome.wustl.edu	37	1	114483438	114483438	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	114483438	114483438	C	G	SNP	HIPK1	NM_198268	human	genbank	57_37b	+1	reviewed	missense	c.433	p.L145V	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
IFIH1	64135	genome.wustl.edu	37	2	163128799	163128799	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	163128799	163128799	C	G	SNP	IFIH1	NM_022168	human	genbank	57_37b	-1	reviewed	missense	c.2553	p.E851D	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_DEATH domain,HMMPfam_CARD,HMMSmart_SM00487,HMMPfam_ResIII,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors	
IKBKE	9641	genome.wustl.edu	37	1	206658614	206658614	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	206658614	206658614	G	A	SNP	IKBKE	NM_014002	human	genbank	57_37b	+1	validated	silent	c.1587	p.K529	0.997	NULL	PatternScan_PROTEIN_KINASE_ST,HMMPfam_Pkinase,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP	-	no_errors	
INTS8	55656	genome.wustl.edu	37	8	95884207	95884207	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	95884207	95884207	T	C	SNP	INTS8	NM_017864	human	genbank	57_37b	+1	provisional	missense	c.2510	p.I837T	1.000	NULL	NULL	-	no_errors	
JAGN1	84522	genome.wustl.edu	37	3	9934708	9934708	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	9934708	9934708	C	T	SNP	JAGN1	NM_032492	human	genbank	57_37b	+1	validated	nonsense	c.199	p.Q67*	0.986	HMMPfam_DUF1352	HMMPfam_DUF1352	-	no_errors	
KCNQ2	3785	genome.wustl.edu	37	20	62078142	62078142	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62078142	62078142	G	C	SNP	KCNQ2	NM_172107	human	genbank	57_37b	-1	reviewed	missense	c.345	p.I115M	1.000	superfamily_Voltage-gated potassium channels	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel	-	no_errors	
LOC100290018	0	genome.wustl.edu	37	1	4072209	4072209	+	Missense_Mutation	SNP	G	T	T	rs55798869	byCluster;byFrequency;by1000genomes	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	4072209	4072209	G	T	SNP	LOC100290018	XM_002346370	human	genbank	57_37b	-1	model	missense	c.258	p.N86K	0.000	NULL	NULL	-		
LOC127841	0	genome.wustl.edu	37	1	204337634	204337634	+	RNA	SNP	T	C	C	rs2942138	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	204337634	204337634	T	C	SNP	LOC127841	NR_027022	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-		
MAP2K4	6416	genome.wustl.edu	37	17	12043202	12043202	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	12043202	12043202	G	A	SNP	MAP2K4	NM_003010	human	genbank	57_37b	+1	reviewed	splice_site	c.1086+1	e10+1	1.000	-	-	-	no_errors	
MRPS15	64960	genome.wustl.edu	37	1	36921913	36921913	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	36921913	36921913	G	A	SNP	MRPS15	NM_031280	human	genbank	57_37b	-1	reviewed	missense	c.511	p.R171C	0.999	superfamily_S15/NS1 RNA-binding domain,HMMPfam_Ribosomal_S15	superfamily_S15/NS1 RNA-binding domain,HMMPfam_Ribosomal_S15	-	no_errors	
NCKAP5	344148	genome.wustl.edu	37	2	133541462	133541462	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	133541462	133541462	C	T	SNP	NCKAP5	NM_207363	human	genbank	57_37b	-1	validated	silent	c.2922	p.L974	1.000	NULL	NULL	-	no_errors	
NDNL2	56160	genome.wustl.edu	37	15	29561355	29561355	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	29561355	29561355	G	A	SNP	NDNL2	NM_138704	human	genbank	57_37b	-1	reviewed	silent	c.555	p.L185	0.960	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors	
NEB	4703	genome.wustl.edu	37	2	152406191	152406191	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	152406191	152406191	G	C	SNP	NEB	NM_004543	human	genbank	57_37b	-1	reviewed	missense	c.14905	p.H4969D	0.511	HMMSmart_SM00227,HMMPfam_Nebulin	HMMSmart_SM00227,HMMPfam_Nebulin,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
NHSL2	340527	genome.wustl.edu	37	X	71358727	71358727	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	71358727	71358727	C	T	SNP	NHSL2	NM_001013627	human	genbank	57_37b	+1	provisional	silent	c.231	p.V77	0.000	NULL	NULL	-	no_errors	
OR1N1	138883	genome.wustl.edu	37	9	125289222	125289222	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	125289222	125289222	C	T	SNP	OR1N1	NM_012363	human	genbank	57_37b	-1	provisional	silent	c.351	p.A117	0.014	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PAPPA	5069	genome.wustl.edu	37	9	118950362	118950362	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	118950362	118950362	G	A	SNP	PAPPA	NM_002581	human	genbank	57_37b	+1	reviewed	missense	c.1345	p.V449M	0.976	superfamily_SSF55486,HMMPfam_Notch,HMMSmart_NL	superfamily_ConA_like_lec_gl,HMMSmart_LamGL,superfamily_SSF55486,HMMPfam_Notch,HMMSmart_NL,PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M43,superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	-	no_errors	
PDZD2	23037	genome.wustl.edu	37	5	32101067	32101070	+	In_Frame_Del	DEL	TAAG	TAAG	-	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	TAAG	TAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	32101067	32101070	TAAG	-	DEL	PDZD2	ENST00000397559	human	ensembl	57_37b	+1	known	in_frame_del	c.110_112	p.I37in_frame_del	0.001:0.002:0.002	superfamily_PDZ	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ	(deletion:cds_exon[32100958,32101069], intron[32101070,32101210])	no_errors	
RGPD3	653489	genome.wustl.edu	37	2	107042506	107042506	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	107042506	107042506	G	A	SNP	RGPD3	NM_001144013	human	genbank	57_37b	-1	provisional	missense	c.2644	p.P882S	1.000	NULL	superfamily_SSF48452,HMMPfam_TPR_1,superfamily_SSF50729,HMMPfam_Ran_BP1,HMMSmart_RanBD,HMMPfam_GRIP,HMMSmart_Grip	-	no_errors	
RRM2	6241	genome.wustl.edu	37	2	10269010	10269010	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	10269010	10269010	A	G	SNP	RRM2	NM_001034	human	genbank	57_37b	+1	reviewed	silent	c.834	p.K278	0.998	superfamily_Ferritin/RR_like,HMMPfam_Ribonuc_red_sm	superfamily_Ferritin/RR_like,HMMPfam_Ribonuc_red_sm,PatternScan_RIBORED_SMALL	-	no_errors	
SALL2	6297	genome.wustl.edu	37	14	21992915	21992915	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	21992915	21992915	G	A	SNP	SALL2	NM_005407	human	genbank	57_37b	-1	validated	missense	c.947	p.S316L	0.047	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
SEPT1	1731	genome.wustl.edu	37	16	30393617	30393617	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	30393617	30393617	C	G	SNP	SEPT1	NM_052838	human	genbank	57_37b	-1	reviewed	missense	c.73	p.D25H	1.000	superfamily_SSF52540,HMMPfam_Septin	superfamily_SSF52540,HMMPfam_Septin	-	no_errors	
SLFN12L	342615	genome.wustl.edu	37	17	33807200	33807200	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	33807200	33807200	C	T	SNP	SLFN12L	NM_001145027	human	genbank	57_37b	-1	validated	missense	c.116	p.R39H	0.078	NULL	HMMPfam_AAA_4	-	no_errors	
STK33	65975	genome.wustl.edu	37	11	8435219	8435219	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	8435219	8435219	C	T	SNP	STK33	NM_030906	human	genbank	57_37b	-1	validated	silent	c.1167	p.V389	0.220	superfamily_Protein kinase-like (PK-like)	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
SWAP70	23075	genome.wustl.edu	37	11	9735179	9735179	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	9735179	9735179	C	T	SNP	SWAP70	NM_015055	human	genbank	57_37b	+1	validated	missense	c.407	p.S136L	0.934	superfamily_SSF47473	superfamily_SSF47473,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors	
TH1L	51497	genome.wustl.edu	37	20	57564035	57564035	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	57564035	57564035	G	A	SNP	TH1L	NM_198976	human	genbank	57_37b	+1	reviewed	missense	c.490	p.E164K	1.000	HMMPfam_TH1	HMMPfam_TH1	-	no_errors	
USP12	219333	genome.wustl.edu	37	13	27664021	27664021	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	27664021	27664021	G	A	SNP	USP12	NM_182488	human	genbank	57_37b	-1	provisional	missense	c.733	p.R245W	1.000	superfamily_SSF54001,HMMPfam_UCH	superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors	
VPS13B	157680	genome.wustl.edu	37	8	100729551	100729551	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	100729551	100729551	G	C	SNP	VPS13B	NM_017890	human	genbank	57_37b	+1	reviewed	missense	c.6682	p.E2228Q	1.000	NULL	PatternScan_ZINC_PROTEASE	-	no_errors	
VPS41	27072	genome.wustl.edu	37	7	38796567	38796567	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	38796567	38796567	C	G	SNP	VPS41	NM_014396	human	genbank	57_37b	-1	reviewed	missense	c.1566	p.K522N	1.000	superfamily_WD40 repeat-like,superfamily_ARM repeat	superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_RING/U-box	-	no_errors	
ZNF610	162963	genome.wustl.edu	37	19	52856956	52856956	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RV-01A-11D-A099-09	TCGA-B6-A0RV-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52856956	52856956	G	A	SNP	ZNF610	NM_173530	human	genbank	57_37b	+1	validated	missense	c.85	p.V29M	0.972	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
