Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACCN4	55515	genome.wustl.edu	37	2	220396583	220396583	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	220396583	220396583	A	G	SNP	ACCN4	NM_018674	human	genbank	57_37b	+1	reviewed	missense	c.1067	p.D356G	1.000	HMMPfam_ASC	HMMPfam_ASC,PatternScan_ASC	-	no_errors	
BGN	633	genome.wustl.edu	37	X	152771478	152771478	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	152771478	152771478	G	A	SNP	BGN	NM_001711	human	genbank	57_37b	+1	reviewed	missense	c.509	p.R170H	0.857	superfamily_SSF52058,HMMPfam_LRR_1	superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1	-	no_errors	
BRD9	65980	genome.wustl.edu	37	5	878503	878503	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	878503	878503	T	C	SNP	BRD9	NM_023924	human	genbank	57_37b	-1	validated	missense	c.950	p.Y317C	1.000	NULL	superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain	-	no_errors	
BRSK2	9024	genome.wustl.edu	37	11	1471018	1471018	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1471018	1471018	C	T	SNP	BRSK2	NM_003957	human	genbank	57_37b	+1	validated	silent	c.1239	p.I413	1.000	superfamily_Kinase_like	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
C6orf118	168090	genome.wustl.edu	37	6	165706931	165706931	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	165706931	165706931	G	T	SNP	C6orf118	NM_144980	human	genbank	57_37b	-1	validated	missense	c.1091	p.A364E	0.000	NULL	NULL	-	no_errors	
CASP6	839	genome.wustl.edu	37	4	110610590	110610590	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	110610590	110610590	G	A	SNP	CASP6	NM_001226	human	genbank	57_37b	-1	reviewed	nonsense	c.778	p.R260*	0.997	superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14	superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS	-	no_errors	
CDKL1	8814	genome.wustl.edu	37	14	50862547	50862547	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	50862547	50862547	A	T	SNP	CDKL1	NM_004196	human	genbank	57_37b	-1	reviewed	missense	c.43	p.S15T	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
CFHR4	10877	genome.wustl.edu	37	1	196887467	196887467	+	Silent	SNP	G	G	A	rs12757817	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	196887467	196887467	G	A	SNP	CFHR4	NM_006684	human	genbank	57_37b	+1	validated	silent	c.927	p.A309	0.000	superfamily_Complement_control_module	superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	-		
CSAG1	158511	genome.wustl.edu	37	X	151908833	151908833	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	151908833	151908833	G	C	SNP	CSAG1	NM_001102576	human	genbank	57_37b	+1	reviewed	missense	c.72	p.W24C	0.000	NULL	NULL	-	no_errors	
CSMD3	114788	genome.wustl.edu	37	8	113237127	113237127	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	113237127	113237127	G	A	SNP	CSMD3	NM_198123	human	genbank	57_37b	-1	validated	missense	c.10997	p.S3666L	1.000	NULL	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10	-	no_errors	
GOLGA8G	283768	genome.wustl.edu	37	15	28771127	28771127	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	28771127	28771127	C	G	SNP	GOLGA8G	ENST00000416855	human	ensembl	57_37b	-1	known	missense	c.1177	p.E393Q	1.000	NULL	NULL	-	no_errors	
GPR109A	338442	genome.wustl.edu	37	12	123187710	123187710	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	123187710	123187710	C	G	SNP	GPR109A	NM_177551	human	genbank	57_37b	-1	validated	missense	c.121	p.G41R	1.000	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
GRAMD2	196996	genome.wustl.edu	37	15	72456002	72456002	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	72456002	72456002	C	T	SNP	GRAMD2	NM_001012642	human	genbank	57_37b	-1	validated	missense	c.697	p.V233M	0.000	NULL	HMMPfam_GRAM,HMMSmart_SM00568	-	no_errors	
HMG20A	10363	genome.wustl.edu	37	15	77759649	77759649	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	77759649	77759649	G	A	SNP	HMG20A	NM_018200	human	genbank	57_37b	+1	provisional	silent	c.450	p.Q150	1.000	superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	-	no_errors	
HS3ST2	9956	genome.wustl.edu	37	16	22926628	22926628	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	22926628	22926628	C	T	SNP	HS3ST2	NM_006043	human	genbank	57_37b	+1	reviewed	silent	c.849	p.G283	0.962	superfamily_SSF52540,HMMPfam_Sulfotransfer_1	superfamily_SSF52540,HMMPfam_Sulfotransfer_1	-	no_errors	
HSPA9	3313	genome.wustl.edu	37	5	137892185	137892185	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	137892185	137892185	G	C	SNP	HSPA9	NM_004134	human	genbank	57_37b	-1	reviewed	missense	c.1918	p.L640V	1.000	HMMPfam_HSP70	superfamily_SSF53067,HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_SSF100920	-	no_errors	
ICOSLG	23308	genome.wustl.edu	37	21	45656914	45656914	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	45656914	45656914	C	T	SNP	ICOSLG	NM_015259	human	genbank	57_37b	-1	validated	missense	c.242	p.R81Q	0.000	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409	-	no_errors	
KALRN	8997	genome.wustl.edu	37	3	124017740	124017740	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	124017740	124017740	C	A	SNP	KALRN	NM_001024660	human	genbank	57_37b	+1	reviewed	missense	c.1066	p.H356N	1.000	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150	superfamily_CRAL/TRIO domain,HMMSmart_SM00516,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMSmart_SM00233,HMMPfam_PH,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
KCNN2	3781	genome.wustl.edu	37	5	113698868	113698868	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	113698868	113698868	G	C	SNP	KCNN2	NM_021614	human	genbank	57_37b	+1	reviewed	missense	c.396	p.K132N	1.000	HMMPfam_SK_channel	HMMPfam_SK_channel,superfamily_SSF81324,HMMPfam_Ion_trans_2,superfamily_CaM_bd,HMMPfam_CaMBD	-	no_errors	
KIAA1524	57650	genome.wustl.edu	37	3	108276094	108276094	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	108276094	108276094	C	T	SNP	KIAA1524	NM_020890	human	genbank	57_37b	-1	validated	silent	c.2181	p.L727	0.994	NULL	superfamily_ARM repeat	-	no_errors	
KIAA2018	205717	genome.wustl.edu	37	3	113377798	113377798	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	113377798	113377798	C	A	SNP	KIAA2018	NM_001009899	human	genbank	57_37b	-1	validated	missense	c.2731	p.D911Y	1.000	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353	-	no_errors	
LBR	3930	genome.wustl.edu	37	1	225600340	225600340	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	225600340	225600340	A	G	SNP	LBR	NM_002296	human	genbank	57_37b	-1	reviewed	silent	c.900	p.Y300	0.955	HMMPfam_ERG4_ERG24	HMMPfam_LBR_tudor,HMMSmart_TUDOR,HMMPfam_ERG4_ERG24,PatternScan_STEROL_REDUCT_1,PatternScan_STEROL_REDUCT_2	-	no_errors	
LCE1D	353134	genome.wustl.edu	37	1	152770312	152770319	+	Frame_Shift_Del	DEL	CAAGTGCA	CAAGTGCA	-	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	CAAGTGCA	CAAGTGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152770312	152770319	CAAGTGCA	-	DEL	LCE1D	NM_178352	human	genbank	57_37b	+1	validated	frame_shift_del	c.42_49	p.K15fs	1.000:1.000:1.000:1.000:1.000:0.999:0.857:0.754	NULL	NULL	(deletion:cds_exon[152770271,152770615])	no_errors	
LHX5	64211	genome.wustl.edu	37	12	113905144	113905144	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	113905144	113905144	C	T	SNP	LHX5	NM_022363	human	genbank	57_37b	-1	reviewed	missense	c.758	p.R253Q	1.000	NULL	superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
LMLN	89782	genome.wustl.edu	37	3	197765775	197765775	+	RNA	SNP	G	G	A	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	197765775	197765775	G	A	SNP	LMLN	NR_026786	human	genbank	57_37b	+1	reviewed	rna	NULL	NULL	0.169	-	-	-	no_errors	
LOC100127922	0	genome.wustl.edu	37	5	173988914	173988914	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	173988914	173988914	G	C	SNP	LOC100127922	XM_002342573	human	genbank	57_37b	+1	model	missense	c.268	p.A90P	1.000	superfamily_Ubiquitin-like	superfamily_Ubiquitin-like	-	no_errors	
MRC2	9902	genome.wustl.edu	37	17	60767630	60767630	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	60767630	60767630	C	T	SNP	MRC2	NM_006039	human	genbank	57_37b	+1	validated	silent	c.3856	p.L1286	0.987	superfamily_C-type lectin-like,HMMSmart_SM00034	superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,PatternScan_LIPOCALIN	-	no_errors	
MUC5B	727897	genome.wustl.edu	37	11	1266823	1266823	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1266823	1266823	G	A	SNP	MUC5B	NM_002458	human	genbank	57_37b	+1	validated	missense	c.8722	p.G2908R	0.431	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot,PatternScan_CTCK_1	-	no_errors	
OR5L2	26338	genome.wustl.edu	37	11	55595297	55595297	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55595297	55595297	G	T	SNP	OR5L2	NM_001004739	human	genbank	57_37b	+1	provisional	silent	c.603	p.L201	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PEX7	5191	genome.wustl.edu	37	6	137147540	137147540	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	137147540	137147540	C	G	SNP	PEX7	NM_000288	human	genbank	57_37b	+1	reviewed	missense	c.272	p.S91W	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
PIAS4	51588	genome.wustl.edu	37	19	4037695	4037695	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4037695	4037695	C	T	SNP	PIAS4	NM_015897	human	genbank	57_37b	+1	provisional	missense	c.1355	p.P452L	0.000	NULL	HMMPfam_SAP,HMMSmart_SAP,superfamily_SSF57850,HMMPfam_zf-MIZ	-	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PLA2G3	50487	genome.wustl.edu	37	22	31532969	31532969	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	31532969	31532969	A	G	SNP	PLA2G3	NM_015715	human	genbank	57_37b	-1	validated	missense	c.1124	p.I375T	0.705	superfamily_Phospholipase A2 PLA2	superfamily_Phospholipase A2 PLA2,HMMPfam_Phospholip_A2_2,PatternScan_PA2_HIS	-	no_errors	
PTEN	5728	genome.wustl.edu	37	10	89653844	89653844	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	89653844	89653844	A	-	DEL	PTEN	ENST00000371953	human	ensembl	57_37b	+1	known	frame_shift_del	c.142	p.N48fs	1.000	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_DSPc,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	(deletion:cds_exon[89653782,89653866])	no_errors	
PTEN	5728	genome.wustl.edu	37	10	89717771	89717771	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	89717771	89717771	A	T	SNP	PTEN	ENST00000371953	human	ensembl	57_37b	+1	known	nonsense	c.796	p.K266*	1.000	HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_DSPc,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors	
RAPGEF3	10411	genome.wustl.edu	37	12	48144927	48144928	+	In_Frame_Ins	INS	-	-	CGGGCT	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	48144927	48144928	-	CGGGCT	INS	RAPGEF3	NM_001098531	human	genbank	57_37b	-1	validated	in_frame_ins	c.575_574	p.192in_frame_insEP	0.000:0.000	"superfamily_""Winged helix"" DNA-binding domain"	"superfamily_""Winged helix"" DNA-binding domain,HMMPfam_DEP,HMMSmart_SM00049,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF"	-	no_errors	
RTEL1	51750	genome.wustl.edu	37	20	62322279	62322279	+	Silent	SNP	G	G	C	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62322279	62322279	G	C	SNP	RTEL1	NM_032957	human	genbank	57_37b	+1	reviewed	silent	c.2535	p.A845	0.000	NULL	superfamily_SSF52540,HMMSmart_DEXDc2,HMMPfam_ResIII,HMMPfam_DEAD_2,HMMSmart_HELICc2,superfamily_SSF57850	-	no_errors	
SLC9A8	23315	genome.wustl.edu	37	20	48466163	48466163	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	48466163	48466163	T	G	SNP	SLC9A8	NM_015266	human	genbank	57_37b	+1	validated	missense	c.480	p.F160L	0.995	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	no_errors	
SLCO1B3	28234	genome.wustl.edu	37	12	21028168	21028168	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	21028168	21028168	G	A	SNP	SLCO1B3	NM_019844	human	genbank	57_37b	+1	validated	splice_site	c.728-1	e7-1	0.906	-	-	-	no_errors	
SMARCC1	6599	genome.wustl.edu	37	3	47719705	47719705	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	47719705	47719705	A	G	SNP	SMARCC1	NM_003074	human	genbank	57_37b	-1	validated	silent	c.1554	p.D518	1.000	HMMPfam_SWIRM	superfamily_BRCT,HMMSmart_CHROMO,HMMPfam_SWIRM,superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding	-	no_errors	
SNRPB	6628	genome.wustl.edu	37	20	2451335	2451336	+	Frame_Shift_Ins	INS	-	-	TG	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	2451335	2451336	-	TG	INS	SNRPB	NM_198216	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.2_1	p.M1fs	1.000:1.000	NULL	superfamily_Sm-like ribonucleoproteins,HMMPfam_LSM,HMMSmart_SM00651	-	no_errors	
TPI1	7167	genome.wustl.edu	37	12	6976710	6976710	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6976710	6976710	C	T	SNP	TPI1	ENST00000229270	human	ensembl	57_37b	+1	known	nonsense	c.91	p.Q31*	0.995	NULL	superfamily_Triosephosphate isomerase (TIM),HMMPfam_TIM,PatternScan_TIM	-	no_errors	
