Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAMTS17	170691	genome.wustl.edu	37	15	100821576	100821576	+	Missense_Mutation	SNP	G	G	A	rs7496668	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	100821576	100821576	G	A	SNP	ADAMTS17	NM_139057	human	genbank	57_37b	-1	reviewed	missense	c.647	p.S216L	0.016	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_PLAC"	-		
ALPI	248	genome.wustl.edu	37	2	233322998	233322998	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	233322998	233322998	G	A	SNP	ALPI	NM_001631	human	genbank	57_37b	+1	reviewed	missense	c.1063	p.D355N	0.000	superfamily_Alkaline phosphatase-like,HMMPfam_Alk_phosphatase,HMMSmart_SM00098	superfamily_Alkaline phosphatase-like,HMMPfam_Alk_phosphatase,HMMSmart_SM00098,PatternScan_ALKALINE_PHOSPHATASE	-	no_errors	
ALS2CL	259173	genome.wustl.edu	37	3	46727909	46727909	+	Missense_Mutation	SNP	C	C	A	rs34935085	byCluster;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	46727909	46727909	C	A	SNP	ALS2CL	ENST00000423707	human	ensembl	57_37b	-1	known	missense	c.347	p.W116L	0.999	NULL	NULL	-		
ASB16	92591	genome.wustl.edu	37	17	42248346	42248346	+	Missense_Mutation	SNP	A	A	T	rs7218599	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42248346	42248346	A	T	SNP	ASB16	NM_080863	human	genbank	57_37b	+1	reviewed	missense	c.189	p.Q63H	1.000	superfamily_Ankyrin repeat	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_SOCS_box	-		
C20orf185	359710	genome.wustl.edu	37	20	31656632	31656632	+	Missense_Mutation	SNP	C	C	G	rs6057717	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	31656632	31656632	C	G	SNP	C20orf185	NM_182658	human	genbank	57_37b	+1	provisional	missense	c.1002	p.H334Q	0.480	superfamily_Bactericidal_perm-incr_a/b_dom,HMMSmart_BPI2,HMMPfam_LBP_BPI_CETP_C	PatternScan_LBP_BPI_CETP,superfamily_Bactericidal_perm-incr_a/b_dom,HMMSmart_BPI1,HMMPfam_LBP_BPI_CETP,HMMSmart_BPI2,HMMPfam_LBP_BPI_CETP_C	-		
C6orf25	80739	genome.wustl.edu	37	6	31691657	31691657	+	Silent	SNP	G	G	A	rs116739740	byCluster;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	31691657	31691657	G	A	SNP	C6orf25	NM_138272	human	genbank	57_37b	+1	reviewed	silent	c.303	p.G101	0.940	NULL	NULL	-		
C7orf26	79034	genome.wustl.edu	37	7	6639953	6639953	+	Missense_Mutation	SNP	G	G	A	rs34300529	byCluster;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	6639953	6639953	G	A	SNP	C7orf26	ENST00000445375	human	ensembl	57_37b	+1	known	missense	c.286	p.G96S	1.000	NULL	NULL	-		
CCDC154	0	genome.wustl.edu	37	16	1488052	1488052	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1488052	1488052	A	C	SNP	CCDC154	NM_001143980	human	genbank	57_37b	-1	provisional	missense	c.1151	p.L384R	0.656	NULL	NULL	-	no_errors	
CCDC33	80125	genome.wustl.edu	37	15	74622678	74622678	+	Missense_Mutation	SNP	G	A	A	rs1564782	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	74622678	74622678	G	A	SNP	CCDC33	NM_025055	human	genbank	57_37b	+1	validated	missense	c.1439	p.S480N	0.000	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2	-		
CHD1L	9557	genome.wustl.edu	37	1	146747774	146747775	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	146747774	146747775	-	A	INS	CHD1L	NM_004284	human	genbank	57_37b	+1	validated	frame_shift_ins	c.1392_1393	p.V465fs	0.964:0.999	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors	
COL13A1	1305	genome.wustl.edu	37	10	71562437	71562437	+	Silent	SNP	G	G	A	rs10998973	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	71562437	71562437	G	A	SNP	COL13A1	NM_001130103	human	genbank	57_37b	+1	reviewed	silent	c.258	p.T86	1.000	NULL	HMMPfam_Collagen	-		
CYP11B2	1585	genome.wustl.edu	37	8	143994702	143994702	+	Silent	SNP	G	G	T	rs78354466	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	143994702	143994702	G	T	SNP	CYP11B2	NM_000498	human	genbank	57_37b	-1	reviewed	silent	c.1120	p.R374	1.000	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-		
DAGLA	747	genome.wustl.edu	37	11	61487690	61487690	+	Silent	SNP	G	G	A	rs198430	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	61487690	61487690	G	A	SNP	DAGLA	NM_006133	human	genbank	57_37b	+1	validated	silent	c.63	p.P21	0.962	NULL	superfamily_SSF53474,HMMPfam_Lipase_3,PatternScan_LIPASE_SER	-		
ENDOU	0	genome.wustl.edu	37	12	48110712	48110712	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	48110712	48110712	G	A	SNP	ENDOU	NM_006025	human	genbank	57_37b	-1	reviewed	missense	c.389	p.P130L	0.222	HMMPfam_XendoU	HMMPfam_Somatomedin_B,HMMSmart_SO,superfamily_SSF90188,PatternScan_SMB_1,HMMPfam_XendoU	-	no_errors	
ENSG00000214605	0	genome.wustl.edu	37	7	72281250	72281250	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	72281250	72281250	A	G	SNP	ENSG00000214605	ENST00000438904	human	ensembl	57_37b	-1	known	missense	c.110	p.V37A	0.999	HMMPfam_Flavodoxin_1,superfamily_Flavoproteins	HMMPfam_Flavodoxin_1,superfamily_Flavoproteins	-	no_errors	
ENSG00000225846	0	genome.wustl.edu	37	4	76958071	76958071	+	Missense_Mutation	SNP	G	G	C	rs10031983	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	76958071	76958071	G	C	SNP	ENSG00000225846	ENST00000446032	human	ensembl	57_37b	-1	known	missense	c.147	p.F49L	1.000	HMMPfam_Ribosomal_L36e	HMMPfam_Ribosomal_L36e	-		
ENSG00000230883	0	genome.wustl.edu	37	3	127282638	127282638	+	Missense_Mutation	SNP	T	T	G	rs62264112	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	127282638	127282638	T	G	SNP	ENSG00000230883	ENST00000455379	human	ensembl	57_37b	+1	known	missense	c.176	p.I59S	0.010	NULL	NULL	-		
ENSG00000246407	0	genome.wustl.edu	37	12	8384821	8384821	+	RNA	SNP	C	C	T	rs11044162	byCluster;byFrequency	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	8384821	8384821	C	T	SNP	ENSG00000246407	ENST00000499592	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.034	-	-	-		
FBN1	2200	genome.wustl.edu	37	15	48766481	48766481	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	48766481	48766481	C	A	SNP	FBN1	NM_000138	human	genbank	57_37b	-1	reviewed	missense	c.4181	p.G1394V	1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_2	HMMSmart_SM00181,HMMPfam_EGF,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_Concanavalin A-like lectins/glucanases,superfamily_TB module/8-cys domain,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Growth factor receptor domain	-	no_errors	
HERC2	8924	genome.wustl.edu	37	15	28389261	28389261	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	28389261	28389261	G	A	SNP	HERC2	NM_004667	human	genbank	57_37b	-1	reviewed	missense	c.11261	p.A3754V	1.000	NULL	superfamily_RCC1/BLIP-II,HMMPfam_RCC1,HMMSmart_SM00706,superfamily_Cytochrome b5-like heme/steroid binding domain,HMMPfam_Cyt-b5,HMMPfam_MIB_HERC2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Galactose-binding domain-like,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RCC1_2,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors	
HIST1H3G	8355	genome.wustl.edu	37	6	26271462	26271462	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26271462	26271462	C	T	SNP	HIST1H3G	NM_003534	human	genbank	57_37b	-1	reviewed	missense	c.151	p.E51K	1.000	superfamily_Histone-fold,HMMSmart_SM00428	superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2	-	no_errors	
HSD3B7	80270	genome.wustl.edu	37	16	30999198	30999198	+	Silent	SNP	C	C	T	rs17849880	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	30999198	30999198	C	T	SNP	HSD3B7	NM_025193	human	genbank	57_37b	+1	reviewed	silent	c.804	p.Y268	1.000	superfamily_NAD(P)-bd,HMMPfam_3Beta_HSD	superfamily_NAD(P)-bd,HMMPfam_3Beta_HSD	-		
HTT	3064	genome.wustl.edu	37	4	3215835	3215835	+	Missense_Mutation	SNP	T	T	C	rs362331	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	3215835	3215835	T	C	SNP	HTT	NM_002111	human	genbank	57_37b	+1	reviewed	missense	c.6925	p.Y2309H	1.000	NULL	superfamily_ARM repeat,HMMPfam_HEAT	-		
HTT	3064	genome.wustl.edu	37	4	3234980	3234980	+	Missense_Mutation	SNP	G	G	A	rs362272	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	3234980	3234980	G	A	SNP	HTT	NM_002111	human	genbank	57_37b	+1	reviewed	missense	c.8356	p.V2786I	0.032	NULL	HMMPfam_HEAT,superfamily_ARM repeat	-		
HYAL1	3373	genome.wustl.edu	37	3	50339622	50339622	+	Missense_Mutation	SNP	C	C	T	rs116482870	by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	50339622	50339622	C	T	SNP	HYAL1	NM_007312	human	genbank	57_37b	-1	reviewed	missense	c.766	p.G256R	0.005	HMMPfam_Glyco_hydro_56,superfamily_(Trans)glycosidases	HMMPfam_Glyco_hydro_56,superfamily_(Trans)glycosidases,PatternScan_EGF_2	-		
INF2	64423	genome.wustl.edu	37	14	105180565	105180565	+	Silent	SNP	T	T	C	rs4983535	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105180565	105180565	T	C	SNP	INF2	NM_022489	human	genbank	57_37b	+1	validated	silent	c.3066	p.D1022	0.001	NULL	HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2,HMMPfam_WH2,PatternScan_ALKALINE_PHOSPHATASE	-		
KANK2	25959	genome.wustl.edu	37	19	11304498	11304498	+	Silent	SNP	C	C	T	rs755238	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11304498	11304498	C	T	SNP	KANK2	NM_001136191	human	genbank	57_37b	-1	validated	silent	c.258	p.S86	0.718	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-		
KIAA2026	158358	genome.wustl.edu	37	9	5922013	5922013	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	5922013	5922013	G	A	SNP	KIAA2026	NM_001017969	human	genbank	57_37b	-1	validated	missense	c.3983	p.T1328I	1.000	NULL	superfamily_Bromodomain	-	no_errors	
KLHL17	339451	genome.wustl.edu	37	1	900505	900505	+	Silent	SNP	G	G	C	rs28705211	byCluster;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	900505	900505	G	C	SNP	KLHL17	NM_198317	human	genbank	57_37b	+1	provisional	silent	c.1863	p.V621	1.000	HMMSmart_Kelch	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch	-		
KLHL29	114818	genome.wustl.edu	37	2	23919375	23919375	+	Missense_Mutation	SNP	C	C	T	rs3795942	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	23919375	23919375	C	T	SNP	KLHL29	ENST00000288548	human	ensembl	57_37b	+1	known	missense	c.1616	p.T539M	0.999	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2,HMMSmart_SM00612,HMMPfam_Kelch_1	-		
LOC643677	643677	genome.wustl.edu	37	13	103395336	103395336	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	103395336	103395336	T	G	SNP	LOC643677	XM_002344085	human	genbank	57_37b	-1	model	missense	c.7498	p.K2500Q	0.000	NULL	NULL	-	no_errors	
LOC646813	646813	genome.wustl.edu	37	11	50368338	50368338	+	RNA	SNP	A	A	G	rs534142	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	50368338	50368338	A	G	SNP	LOC646813	NR_024504	human	genbank	57_37b	+1	validated	rna	NULL	NULL	1.000	-	-	-		
LOC728675	728675	genome.wustl.edu	37	17	42722874	42722874	+	Silent	SNP	G	G	A	rs7502041	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42722874	42722874	G	A	SNP	LOC728675	XM_001128122	human	genbank	57_37b	+1	model	silent	c.96	p.T32	0.997	NULL	NULL	-		
MARCH2	51257	genome.wustl.edu	37	19	8486884	8486884	+	Missense_Mutation	SNP	G	G	A	rs1133893	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	8486884	8486884	G	A	SNP	MARCH2	NM_001005415	human	genbank	57_37b	+1	validated	missense	c.160	p.A54T	1.000	NULL	superfamily_SSF57850,HMMSmart_RINGv,HMMPfam_zf-C3HC4	-		
MLL4	9757	genome.wustl.edu	37	19	36220093	36220093	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36220093	36220093	G	T	SNP	MLL4	NM_014727	human	genbank	57_37b	+1	reviewed	nonsense	c.4813	p.E1605*	1.000	NULL	HMMPfam_AT_hook,HMMPfam_zf-CXXC,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors	
MYL7	58498	genome.wustl.edu	37	7	44180044	44180044	+	Missense_Mutation	SNP	T	T	A	rs75267165	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	44180044	44180044	T	A	SNP	MYL7	ENST00000447951	human	ensembl	57_37b	-1	known	missense	c.263	p.H88L	0.000	superfamily_EF-hand	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-		
NCOR1	9611	genome.wustl.edu	37	17	16049835	16049835	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	16049835	16049835	G	A	SNP	NCOR1	NM_006311	human	genbank	57_37b	-1	reviewed	nonsense	c.937	p.Q313*	1.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	-	no_errors	
NRAP	4892	genome.wustl.edu	37	10	115370292	115370292	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	115370292	115370292	G	A	SNP	NRAP	NM_198060	human	genbank	57_37b	-1	validated	nonsense	c.3529	p.R1177*	1.000	NULL	HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,HMMSmart_SM00227,HMMPfam_Nebulin	-	no_errors	
NUBP2	10101	genome.wustl.edu	37	16	1838037	1838037	+	Silent	SNP	C	C	G	rs2272977	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1838037	1838037	C	G	SNP	NUBP2	NM_012225	human	genbank	57_37b	+1	validated	silent	c.585	p.T195	0.716	superfamily_SSF52540,HMMPfam_ParA	superfamily_SSF52540,PatternScan_MRP,HMMPfam_ParA	-		
OR2T33	391195	genome.wustl.edu	37	1	248436504	248436504	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248436504	248436504	G	C	SNP	OR2T33	NM_001004695	human	genbank	57_37b	-1	provisional	missense	c.613	p.L205V	0.020	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PAK6	56924	genome.wustl.edu	37	15	40558482	40558482	+	Missense_Mutation	SNP	A	A	G	rs3743135	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	40558482	40558482	A	G	SNP	PAK6	NM_001128628	human	genbank	57_37b	+1	reviewed	missense	c.644	p.H215R	0.000	NULL	HMMPfam_PBD,HMMSmart_SM00285,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	-		
PCDHA1	56147	genome.wustl.edu	37	5	140167463	140167463	+	Silent	SNP	C	C	T	rs3733710	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140167463	140167463	C	T	SNP	PCDHA1	NM_018900	human	genbank	57_37b	+1	reviewed	silent	c.1588	p.L530	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-		
PDIA2	64714	genome.wustl.edu	37	16	336660	336660	+	Silent	SNP	G	G	A	rs11647490	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	336660	336660	G	A	SNP	PDIA2	NM_006849	human	genbank	57_37b	+1	validated	silent	c.1347	p.T449	0.224	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1,PatternScan_ER_TARGET	-		
PDK2	5164	genome.wustl.edu	37	17	48174908	48174908	+	Silent	SNP	C	C	T	rs3178055	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48174908	48174908	C	T	SNP	PDK2	NM_002611	human	genbank	57_37b	+1	provisional	silent	c.240	p.S80	0.050	superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain,HMMPfam_BCDHK_Adom3	superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain,HMMPfam_BCDHK_Adom3,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,HMMSmart_SM00387	-		
PIGT	51604	genome.wustl.edu	37	20	44054349	44054349	+	Silent	SNP	T	T	C	rs707577	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	44054349	44054349	T	C	SNP	PIGT	NM_015937	human	genbank	57_37b	+1	reviewed	silent	c.1620	p.Y540	0.815	HMMPfam_Gpi16	HMMPfam_Gpi16	-		
PIK3CA	5290	genome.wustl.edu	37	3	178916940	178916948	+	In_Frame_Del	DEL	AGAAAAGAT	AGAAAAGAT	-	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	AGAAAAGAT	AGAAAAGAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178916940	178916948	AGAAAAGAT	-	DEL	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	in_frame_del	c.327_335	p.EEKI109in_frame_delD	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_SSF54236	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	(deletion:cds_exon[178916614,178916965])	no_errors	
POLR3E	55718	genome.wustl.edu	37	16	22328486	22328486	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	22328486	22328486	C	T	SNP	POLR3E	NM_018119	human	genbank	57_37b	+1	validated	missense	c.824	p.T275M	1.000	HMMPfam_Sin_N	HMMPfam_Sin_N	-	no_errors	
PPL	5493	genome.wustl.edu	37	16	4942099	4942099	+	Missense_Mutation	SNP	C	C	T	rs1049205	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	4942099	4942099	C	T	SNP	PPL	NM_002705	human	genbank	57_37b	-1	reviewed	missense	c.1766	p.R589Q	1.000	HMMSmart_SM00150,superfamily_Spectrin repeat	HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	-		
SCOC	60592	genome.wustl.edu	37	4	141294814	141294814	+	Missense_Mutation	SNP	G	G	C	rs2271430	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	141294814	141294814	G	C	SNP	SCOC	ENST00000394201	human	ensembl	57_37b	+1	known	missense	c.124	p.V42L	0.001	NULL	HMMPfam_DUF2205	-		
TERF2IP	54386	genome.wustl.edu	37	16	75690148	75690148	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	75690148	75690148	G	A	SNP	TERF2IP	NM_018975	human	genbank	57_37b	+1	provisional	missense	c.839	p.C280Y	1.000	NULL	superfamily_Homeodomain-like,HMMPfam_Myb_DNA-bind_2	-	no_errors	
TFE3	7030	genome.wustl.edu	37	X	48888074	48888074	+	Silent	SNP	T	T	C	rs3027472	byCluster;byFrequency	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48888074	48888074	T	C	SNP	TFE3	NM_006521	human	genbank	57_37b	-1	reviewed	silent	c.1323	p.V441	0.717	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-		
TOP1P2	7152	genome.wustl.edu	37	22	25160785	25160785	+	RNA	SNP	T	T	C	rs9624586	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	25160785	25160785	T	C	SNP	TOP1P2	NR_001283	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	1.000	-	-	-		
TSC22D4	81628	genome.wustl.edu	37	7	100064719	100064719	+	Silent	SNP	A	A	G	rs7806537	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100064719	100064719	A	G	SNP	TSC22D4	NM_030935	human	genbank	57_37b	-1	provisional	silent	c.1051	p.L351	1.000	HMMPfam_TSC22	PatternScan_TSC22,HMMPfam_TSC22	-		
UGGT2	55757	genome.wustl.edu	37	13	96555290	96555290	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	96555290	96555290	C	A	SNP	UGGT2	NM_020121	human	genbank	57_37b	-1	validated	missense	c.2320	p.G774W	1.000	NULL	HMMPfam_UDP-g_GGTase,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors	
XRCC6BP1	91419	genome.wustl.edu	37	12	58335626	58335626	+	Missense_Mutation	SNP	A	A	T	rs3751325	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WY-01A-11D-A10G-09	TCGA-B6-A0WY-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	58335626	58335626	A	T	SNP	XRCC6BP1	NM_033276	human	genbank	57_37b	+1	provisional	missense	c.142	p.S48C	0.102	NULL	HMMPfam_Peptidase_M76,PatternScan_ZINC_PROTEASE	-		
