Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACE	1636	genome.wustl.edu	37	17	61570872	61570872	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	61570872	61570872	C	T	SNP	ACE	NM_000789	human	genbank	57_37b	+1	reviewed	silent	c.2988	p.F996	1.000	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain,PatternScan_ZINC_PROTEASE"	-	no_errors	
ARCN1	372	genome.wustl.edu	37	11	118468587	118468587	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118468587	118468587	A	G	SNP	ARCN1	NM_001655	human	genbank	57_37b	+1	reviewed	silent	c.1407	p.Q469	1.000	superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,HMMPfam_Adap_comp_sub	superfamily_SNARE-like,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,HMMPfam_Adap_comp_sub	-	no_errors	
ARNT	405	genome.wustl.edu	37	1	150807078	150807078	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150807078	150807078	C	A	SNP	ARNT	NM_001668	human	genbank	57_37b	-1	reviewed	nonsense	c.739	p.E247*	1.000	HMMPfam_PAS	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMSmart_SM00091,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3,HMMSmart_SM00086,superfamily_Positive stranded ssRNA viruses	-	no_errors	
C19orf45	374877	genome.wustl.edu	37	19	7573145	7573149	+	Frame_Shift_Del	DEL	ACAAT	ACAAT	-	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	ACAAT	ACAAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	7573145	7573149	ACAAT	-	DEL	C19orf45	NM_198534	human	genbank	57_37b	+1	validated	frame_shift_del	c.1347_1351	p.Y451fs	0.001:0.000:0.000:0.000:0.000	NULL	NULL	(deletion:cds_exon[7573092,7573316])	no_errors	
C1orf183	55924	genome.wustl.edu	37	1	112270149	112270149	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	112270149	112270149	C	A	SNP	C1orf183	NM_019099	human	genbank	57_37b	-1	validated	missense	c.335	p.C112F	0.029	NULL	NULL	-	no_errors	
CCNG2	901	genome.wustl.edu	37	4	78082828	78082828	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	78082828	78082828	C	G	SNP	CCNG2	NM_004354	human	genbank	57_37b	+1	reviewed	silent	c.633	p.L211	1.000	NULL	superfamily_Cyclin-like,HMMSmart_SM00385,HMMPfam_Cyclin_N	-	no_errors	
CNN2	1265	genome.wustl.edu	37	19	1032430	1032430	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1032430	1032430	C	G	SNP	CNN2	NM_004368	human	genbank	57_37b	+1	reviewed	missense	c.225	p.I75M	1.000	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,PatternScan_CALPONIN_1,HMMPfam_Calponin	-	no_errors	
CNTD2	79935	genome.wustl.edu	37	19	40729202	40729202	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	40729202	40729202	T	A	SNP	CNTD2	ENST00000430325	human	ensembl	57_37b	-1	known	missense	c.681	p.L227F	0.000	superfamily_Cyclin_like	superfamily_Cyclin_like,HMMPfam_Cyclin_N,HMMSmart_CYCLIN	-	no_errors	
DOK7	285489	genome.wustl.edu	37	4	3494956	3494956	+	Missense_Mutation	SNP	C	C	T	rs16844464	byCluster;byFrequency;by1000genomes	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	3494956	3494956	C	T	SNP	DOK7	NM_173660	human	genbank	57_37b	+1	reviewed	missense	c.1243	p.P415S	0.011	NULL	superfamily_PH domain-like,HMMSmart_SM00233	-		
ECHS1	1892	genome.wustl.edu	37	10	135186806	135186806	+	Missense_Mutation	SNP	A	A	G	rs10466126	byCluster;by1000genomes	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	135186806	135186806	A	G	SNP	ECHS1	NM_004092	human	genbank	57_37b	-1	reviewed	missense	c.32	p.V11A	0.001	NULL	superfamily_SSF52096,HMMPfam_ECH,PatternScan_ENOYL_COA_HYDRATASE	-		
ENSG00000210127	0	genome.wustl.edu	37	MT	5590	5590	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	MT	5590	5590	G	A	SNP	ENSG00000210127	ENST00000387392	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors	
ENSG00000245091	0	genome.wustl.edu	37	1	156435151	156435151	+	RNA	SNP	C	C	T	rs36023544	byCluster;byFrequency;by1000genomes	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156435151	156435151	C	T	SNP	ENSG00000245091	ENST00000501046	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.100	-	-	-		
ENSG00000245549	0	genome.wustl.edu	37	1	16947092	16947092	+	RNA	SNP	G	G	A	rs384073	byCluster;by2Hit2Allele;byHapMap	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16947092	16947092	G	A	SNP	ENSG00000245549	ENST00000501442	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.669	-	-	-		
ENSG00000246975	0	genome.wustl.edu	37	1	182585391	182585391	+	RNA	SNP	C	C	A	rs114242036	by1000genomes	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	182585391	182585391	C	A	SNP	ENSG00000246975	ENST00000499569	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.001	-	-	-		
ENSG00000247667	0	genome.wustl.edu	37	7	3083000	3083000	+	RNA	SNP	C	C	A	rs6977630	byCluster;byFrequency;by1000genomes	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	3083000	3083000	C	A	SNP	ENSG00000247667	ENST00000498927	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
FASN	2194	genome.wustl.edu	37	17	80040450	80040450	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	80040450	80040450	C	T	SNP	FASN	NM_004104	human	genbank	57_37b	-1	reviewed	missense	c.5872	p.E1958K	1.000	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	superfamily_Thiolase-like,HMMPfam_ketoacyl-synt,PatternScan_B_KETOACYL_SYNTHASE,HMMPfam_Ketoacyl-synt_C,superfamily_FabD/lysophospholipase-like,HMMPfam_Acyl_transf_1,superfamily_Probable ACP-binding domain of malonyl-CoA ACP transacylase,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_12,superfamily_GroES-like,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N,HMMPfam_adh_short,superfamily_ACP-like,HMMPfam_PP-binding,PatternScan_PHOSPHOPANTETHEINE,superfamily_alpha/beta-Hydrolases,HMMPfam_Thioesterase	-	no_errors	
FRMPD4	9758	genome.wustl.edu	37	X	12736089	12736089	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	12736089	12736089	A	T	SNP	FRMPD4	NM_014728	human	genbank	57_37b	+1	reviewed	missense	c.3144	p.K1048N	0.998	NULL	PatternScan_WW_DOMAIN_1,PatternScan_FERM_1,PatternScan_FERM_2,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ,HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M	-	no_errors	
GALNT7	51809	genome.wustl.edu	37	4	174219320	174219321	+	Frame_Shift_Ins	INS	-	-	ATACCCC	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	174219320	174219321	-	ATACCCC	INS	GALNT7	NM_017423	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1020_1021	p.Q342fs	0.996:0.794	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458	-	no_errors	
HDAC11	79885	genome.wustl.edu	37	3	13545616	13545616	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	13545616	13545616	G	T	SNP	HDAC11	NM_024827	human	genbank	57_37b	+1	reviewed	missense	c.672	p.E224D	1.000	superfamily_SSF52768,HMMPfam_Hist_deacetyl	superfamily_SSF52768,HMMPfam_Hist_deacetyl	-	no_errors	
HLA-G	3135	genome.wustl.edu	37	6	29796435	29796435	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	29796435	29796435	C	-	DEL	HLA-G	NM_002127	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.459	p.L154fs	0.015	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC	(deletion:cds_exon[29796320,29796595])	no_errors	
IFT122	55764	genome.wustl.edu	37	3	129207207	129207207	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	129207207	129207207	G	A	SNP	IFT122	NM_052985	human	genbank	57_37b	+1	reviewed	silent	c.2112	p.A704	0.517	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors	
ITGB4	3691	genome.wustl.edu	37	17	73745040	73745040	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	73745040	73745040	G	A	SNP	ITGB4	NM_000213	human	genbank	57_37b	+1	reviewed	missense	c.3230	p.R1077H	1.000	HMMPfam_Calx-beta,HMMSmart_SM00237	HMMSmart_SM00423,HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like,superfamily_Integrin domains,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_INTEGRIN_BETA,HMMPfam_EGF_2,superfamily_Integrin beta tail domain,HMMPfam_Integrin_B_tail,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors	
LOC100288839	0	genome.wustl.edu	37	18	8830080	8830080	+	Silent	SNP	C	T	T	rs627543	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	8830080	8830080	C	T	SNP	LOC100288839	XM_002344137	human	genbank	57_37b	-1	model	silent	c.420	p.*140	0.000	NULL	NULL	-		
LOC100292590	0	genome.wustl.edu	37	7	1134842	1134842	+	Silent	SNP	C	T	T	rs35126802	byCluster;byFrequency;by1000genomes	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	1134842	1134842	C	T	SNP	LOC100292590	XM_002346007	human	genbank	57_37b	-1	model	silent	c.1068	p.S356	0.000	NULL	NULL	-		
MAP2	4133	genome.wustl.edu	37	2	210557446	210557446	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	210557446	210557446	G	T	SNP	MAP2	NM_002374	human	genbank	57_37b	+1	reviewed	missense	c.552	p.K184N	0.000	NULL	HMMPfam_RII_binding_1,HMMPfam_MAP2_projctn,HMMPfam_Tubulin-binding,PatternScan_TAU_MAP	-	no_errors	
MICAL3	57553	genome.wustl.edu	37	22	18300541	18300541	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	18300541	18300541	G	A	SNP	MICAL3	NM_015241	human	genbank	57_37b	-1	provisional	missense	c.4886	p.A1629V	0.949	NULL	HMMPfam_FAD_binding_3,superfamily_FAD/NAD(P)-binding domain,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors	
MT1DP	326343	genome.wustl.edu	37	16	56677634	56677634	+	RNA	SNP	C	C	T	rs57778164	byCluster;byFrequency;by1000genomes	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	56677634	56677634	C	T	SNP	MT1DP	NR_003658	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.001	-	-	-		
NMS	129521	genome.wustl.edu	37	2	101097609	101097609	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	101097609	101097609	C	T	SNP	NMS	NM_001011717	human	genbank	57_37b	+1	provisional	nonsense	c.394	p.R132*	0.042	NULL	PatternScan_NMU	-	no_errors	
NUMA1	4926	genome.wustl.edu	37	11	71724980	71724980	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	71724980	71724980	C	T	SNP	NUMA1	NM_006185	human	genbank	57_37b	-1	validated	missense	c.3569	p.R1190Q	0.592	NULL	superfamily_Prefoldin	-	no_errors	
OSCAR	126014	genome.wustl.edu	37	19	54599222	54599222	+	Silent	SNP	G	G	T	rs61742144	byCluster;byFrequency;by1000genomes	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	54599222	54599222	G	T	SNP	OSCAR	NM_206818	human	genbank	57_37b	-1	reviewed	silent	c.582	p.P194	0.000	superfamily_SSF48726	superfamily_SSF48726,HMMSmart_IG	-		
PCDH9	5101	genome.wustl.edu	37	13	67802338	67802338	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	67802338	67802338	A	-	DEL	PCDH9	NM_203487	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.235	p.S79fs	1.000	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMPfam_Protocadherin	(deletion:cds_exon[67799537,67802572])	no_errors	
PCDHA4	56144	genome.wustl.edu	37	5	140188734	140188734	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140188734	140188734	C	T	SNP	PCDHA4	NM_018907	human	genbank	57_37b	+1	reviewed	silent	c.1962	p.H654	0.983	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PTPRH	5794	genome.wustl.edu	37	19	55707939	55707939	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55707939	55707939	G	A	SNP	PTPRH	NM_002842	human	genbank	57_37b	-1	validated	silent	c.2208	p.D736	0.000	NULL	HMMPfam_fn3,superfamily_Fibronectin type III,HMMSmart_SM00060,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
RFX4	5992	genome.wustl.edu	37	12	107141268	107141268	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	107141268	107141268	G	T	SNP	RFX4	NM_213594	human	genbank	57_37b	+1	reviewed	missense	c.1687	p.G563W	1.000	NULL	HMMPfam_RFX_DNA_binding,superfamily_SSF46785	-	no_errors	
SCO2	9997	genome.wustl.edu	37	22	50962782	50962782	+	Missense_Mutation	SNP	C	C	G	rs140523	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50962782	50962782	C	G	SNP	SCO2	NM_005138	human	genbank	57_37b	-1	reviewed	missense	c.59	p.R20P	0.000	NULL	HMMPfam_SCO1-SenC,superfamily_Thiordxn-like_fd	-		
TIMELESS	8914	genome.wustl.edu	37	12	56817648	56817648	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56817648	56817648	G	A	SNP	TIMELESS	NM_003920	human	genbank	57_37b	-1	validated	silent	c.1899	p.G633	0.986	NULL	HMMPfam_TIMELESS,HMMPfam_TIMELESS_C	-	no_errors	
TMEM39B	55116	genome.wustl.edu	37	1	32568070	32568070	+	Silent	SNP	C	C	T	rs41306615	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	32568070	32568070	C	T	SNP	TMEM39B	NM_018056	human	genbank	57_37b	+1	validated	silent	c.1275	p.L425	0.080	HMMPfam_Tmp39	HMMPfam_Tmp39	-		
TSC1	7248	genome.wustl.edu	37	9	135798857	135798857	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	135798857	135798857	A	T	SNP	TSC1	NM_000368	human	genbank	57_37b	-1	reviewed	missense	c.386	p.L129H	1.000	HMMPfam_Hamartin	HMMPfam_Hamartin	-	no_errors	
ZNF207	7756	genome.wustl.edu	37	17	30678929	30678929	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	30678929	30678929	C	T	SNP	ZNF207	NM_001098507	human	genbank	57_37b	+1	validated	nonsense	c.166	p.Q56*	1.000	HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
