Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AIM1L	55057	genome.wustl.edu	37	1	26658066	26658067	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	26658066	26658067	-	A	INS	AIM1L	NM_001039775	human	genbank	57_37b	-1	validated	frame_shift_ins	c.1093_1092	p.I364fs	0.994:0.993	superfamily_G_crystallin_SF,HMMPfam_Crystall,HMMSmart_XTALbg	superfamily_G_crystallin_SF,HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_RicinB_like,HMMSmart_RICIN,HMMPfam_Ricin_B_lectin	-	no_errors	
ANXA13	312	genome.wustl.edu	37	8	124693590	124693590	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	124693590	124693590	G	A	SNP	ANXA13	NM_001003954	human	genbank	57_37b	-1	reviewed	nonsense	c.964	p.Q322*	0.471	superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_SM00335	superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_SM00335	-	no_errors	
ANXA13	312	genome.wustl.edu	37	8	124693590	124693590	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	124693590	124693590	G	A	SNP	ANXA13	NM_001003954	human	genbank	57_37b	-1	reviewed	nonsense	c.964	p.Q322*	0.471	superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_SM00335	superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_SM00335	-	no_errors	
BTNL3	10917	genome.wustl.edu	37	5	180420116	180420116	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	180420116	180420116	C	A	SNP	BTNL3	NM_197975	human	genbank	57_37b	+1	validated	missense	c.353	p.S118Y	0.000	superfamily_SSF48726,HMMSmart_IG	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors	
C20orf177	63939	genome.wustl.edu	37	20	58520079	58520079	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	58520079	58520079	C	T	SNP	C20orf177	NM_022106	human	genbank	57_37b	+1	predicted	missense	c.1081	p.H361Y	0.000	NULL	NULL	-	no_errors	
CBLN1	869	genome.wustl.edu	37	16	49315311	49315312	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	49315311	49315312	-	A	INS	CBLN1	NM_004352	human	genbank	57_37b	-1	validated	frame_shift_ins	c.66_65	p.Q22fs	1.000:1.000	NULL	HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q	-	no_errors	
DHX32	55760	genome.wustl.edu	37	10	127530357	127530357	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	127530357	127530357	A	T	SNP	DHX32	NM_018180	human	genbank	57_37b	-1	reviewed	missense	c.1498	p.F500I	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_HA2	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_HA2,HMMPfam_DUF1605	-	no_errors	
DTX4	23220	genome.wustl.edu	37	11	58962833	58962833	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	58962833	58962833	C	T	SNP	DTX4	NM_015177	human	genbank	57_37b	+1	validated	silent	c.1527	p.P509	0.145	NULL	HMMPfam_WWE,HMMSmart_SM00678,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors	
ENSG00000223468	0	genome.wustl.edu	37	6	46712106	46712106	+	Silent	SNP	T	T	C	rs5007833	byCluster	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	46712106	46712106	T	C	SNP	ENSG00000223468	ENST00000412212	human	ensembl	57_37b	-1	known	silent	c.93	p.K31	0.015	NULL	NULL	-		
ENSG00000229113	0	genome.wustl.edu	37	19	42027743	42027743	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42027743	42027743	G	A	SNP	ENSG00000229113	ENST00000439847	human	ensembl	57_37b	-1	known	missense	c.541	p.R181W	0.002	NULL	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors	
HHEX	3087	genome.wustl.edu	37	10	94452135	94452135	+	Silent	SNP	A	A	C	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	94452135	94452135	A	C	SNP	HHEX	NM_002729	human	genbank	57_37b	+1	reviewed	silent	c.372	p.L124	1.000	superfamily_Homeodomain-like	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
HNRNPD	3184	genome.wustl.edu	37	4	83277695	83277695	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	83277695	83277695	T	C	SNP	HNRNPD	NM_031370	human	genbank	57_37b	-1	reviewed	missense	c.995	p.Y332C	1.000	NULL	HMMPfam_CBFNT,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors	
MST1P9	0	genome.wustl.edu	37	1	17083460	17083460	+	RNA	SNP	T	T	C	rs80019340	byCluster;byFrequency	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17083460	17083460	T	C	SNP	MST1P9	NR_002729	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-		
MTR	4548	genome.wustl.edu	37	1	237058726	237058726	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	237058726	237058726	G	A	SNP	MTR	NM_000254	human	genbank	57_37b	+1	reviewed	silent	c.3474	p.L1158	0.937	superfamily_Methionine synthase activation domain-like,HMMPfam_Met_synt_B12	superfamily_Homocysteine S-methyltransferase,HMMPfam_S-methyl_trans,HMMPfam_Pterin_bind,superfamily_Dihydropteroate synthetase-like,superfamily_Methionine synthase domain,HMMPfam_B12-binding_2,superfamily_Cobalamin (vitamin B12)-binding domain,HMMPfam_B12-binding,superfamily_Methionine synthase activation domain-like,HMMPfam_Met_synt_B12	-	no_errors	
MYO10	4651	genome.wustl.edu	37	5	16675085	16675085	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	16675085	16675085	G	C	SNP	MYO10	NM_012334	human	genbank	57_37b	-1	validated	missense	c.4841	p.T1614S	1.000	HMMSmart_MyTH4,HMMPfam_MyTH4	PatternScan_FERM_1,PatternScan_FERM_2,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_MyTH4,HMMPfam_MyTH4,HMMSmart_B41,HMMPfam_RA,superfamily_FERM_3-hlx,HMMPfam_FERM_M	-	no_errors	
OR2G6	391211	genome.wustl.edu	37	1	248685620	248685620	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248685620	248685620	G	T	SNP	OR2G6	NM_001013355	human	genbank	57_37b	+1	validated	missense	c.673	p.V225L	0.001	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PCDHA1	56147	genome.wustl.edu	37	5	140167742	140167742	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140167742	140167742	C	T	SNP	PCDHA1	NM_018900	human	genbank	57_37b	+1	reviewed	missense	c.1867	p.R623C	0.997	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PFTK1	5218	genome.wustl.edu	37	7	90233551	90233551	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	90233551	90233551	C	T	SNP	PFTK1	ENST00000380050	human	ensembl	57_37b	+1	known	silent	c.111	p.T37	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_CYTOCHROME_B5_1,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
PHF15	23338	genome.wustl.edu	37	5	133896481	133896481	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	133896481	133896481	A	G	SNP	PHF15	NM_015288	human	genbank	57_37b	+1	provisional	missense	c.518	p.E173G	1.000	HMMPfam_EPL1	HMMPfam_EPL1,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors	
POP5	51367	genome.wustl.edu	37	12	121018957	121018957	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	121018957	121018957	C	A	SNP	POP5	NM_015918	human	genbank	57_37b	-1	validated	nonsense	c.124	p.G42*	1.000	HMMPfam_RNase_P_Rpp14	HMMPfam_RNase_P_Rpp14	-	no_errors	
POP5	51367	genome.wustl.edu	37	12	121018957	121018957	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	121018957	121018957	C	A	SNP	POP5	NM_015918	human	genbank	57_37b	-1	validated	nonsense	c.124	p.G42*	1.000	HMMPfam_RNase_P_Rpp14	HMMPfam_RNase_P_Rpp14	-	no_errors	
PRIM2	5558	genome.wustl.edu	37	6	57499035	57499035	+	Silent	SNP	T	T	C	rs61753605	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	57499035	57499035	T	C	SNP	PRIM2	ENST00000425433	human	ensembl	57_37b	+1	known	silent	c.1299	p.N433	1.000	HMMPfam_DNA_primase_lrg	HMMPfam_DNA_primase_lrg	-		
PRUNE2	158471	genome.wustl.edu	37	9	79324439	79324439	+	Missense_Mutation	SNP	A	A	T	rs12238013	byCluster;byFrequency;by1000genomes	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	79324439	79324439	A	T	SNP	PRUNE2	NM_015225	human	genbank	57_37b	-1	validated	missense	c.2751	p.D917E	0.276	NULL	superfamily_SSF64182,superfamily_Ferritin/RR_like,superfamily_CRAL_TRIO_C,HMMSmart_SEC14	-		
RHOXF2	84528	genome.wustl.edu	37	X	119293081	119293081	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	119293081	119293081	C	T	SNP	RHOXF2	NM_032498	human	genbank	57_37b	+1	provisional	silent	c.240	p.G80	0.000	NULL	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
RSC1A1	6248	genome.wustl.edu	37	1	15987818	15987818	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	15987818	15987818	C	T	SNP	RSC1A1	NM_006511	human	genbank	57_37b	+1	provisional	silent	c.1455	p.H485	0.009	NULL	HMMSmart_UBA	-	no_errors	
SDPR	8436	genome.wustl.edu	37	2	192700907	192700907	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	192700907	192700907	C	T	SNP	SDPR	NM_004657	human	genbank	57_37b	-1	reviewed	silent	c.1020	p.A340	0.000	NULL	NULL	-	no_errors	
SMARCA4	6597	genome.wustl.edu	37	19	11144187	11144188	+	Frame_Shift_Del	DEL	GG	GG	-	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	GG	GG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11144187	11144188	GG	-	DEL	SMARCA4	NM_001128849	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.3768_3769	p.D1257fs	1.000:1.000	NULL	HMMPfam_QLQ,superfamily_SSF52540,HMMPfam_HSA,HMMSmart_HSA,HMMPfam_BRK,HMMSmart_BRK,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	(deletion:cds_exon[11143966,11144193])	no_errors	
SMARCA4	6597	genome.wustl.edu	37	19	11144187	11144188	+	Frame_Shift_Del	DEL	GG	GG	-	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	GG	GG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11144187	11144188	GG	-	DEL	SMARCA4	NM_001128849	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.3768_3769	p.D1257fs	1.000:1.000	NULL	HMMPfam_QLQ,superfamily_SSF52540,HMMPfam_HSA,HMMSmart_HSA,HMMPfam_BRK,HMMSmart_BRK,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	(deletion:cds_exon[11143966,11144193])	no_errors	
SMARCA4	6597	genome.wustl.edu	37	19	11144189	11144190	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11144189	11144190	-	C	INS	SMARCA4	NM_001128849	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.3770_3771	p.E1258fs	1.000:0.906	NULL	HMMPfam_SNF2_N,HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_HSA,HMMPfam_BRK,HMMSmart_BRK,HMMSmart_HSA,HMMSmart_DEXDc,HMMPfam_QLQ,PatternScan_BROMODOMAIN_1,superfamily_SSF52540	-	no_errors	
SMO	6608	genome.wustl.edu	37	7	128852230	128852230	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	128852230	128852230	C	T	SNP	SMO	NM_005631	human	genbank	57_37b	+1	provisional	missense	c.2302	p.P768S	0.996	NULL	HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,HMMPfam_Frizzled	-	no_errors	
SPEN	23013	genome.wustl.edu	37	1	16265833	16265834	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16265833	16265834	GA	-	DEL	SPEN	NM_015001	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.10906_10907	p.H3638fs	0.999:1.000	superfamily_SPOC-like	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SPOC-like,HMMPfam_SPOC	(deletion:cds_exon[16265791,16265922])	no_errors	
SPEN	23013	genome.wustl.edu	37	1	16265833	16265834	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16265833	16265834	GA	-	DEL	SPEN	NM_015001	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.10906_10907	p.H3638fs	0.999:1.000	superfamily_SPOC-like	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SPOC-like,HMMPfam_SPOC	(deletion:cds_exon[16265791,16265922])	no_errors	
SRGAP1	57522	genome.wustl.edu	37	12	64474111	64474111	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	64474111	64474111	C	A	SNP	SRGAP1	NM_020762	human	genbank	57_37b	+1	validated	missense	c.1369	p.Q457K	1.000	NULL	HMMPfam_FCH,HMMSmart_SM00055,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
ST14	6768	genome.wustl.edu	37	11	130078396	130078396	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	130078396	130078396	C	T	SNP	ST14	NM_021978	human	genbank	57_37b	+1	reviewed	missense	c.2086	p.R696C	1.000	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	superfamily_SSF82671,HMMPfam_SEA,superfamily_CUB,HMMSmart_CUB,HMMPfam_CUB,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
STAT2	6773	genome.wustl.edu	37	12	56750353	56750353	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56750353	56750353	C	T	SNP	STAT2	NM_005419	human	genbank	57_37b	-1	reviewed	missense	c.3	p.M1I	1.000	superfamily_Transcription factor STAT-4 N-domain	superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_int,superfamily_STAT,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_p53-like transcription factors,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors	
STAT5B	6777	genome.wustl.edu	37	17	40371806	40371806	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40371806	40371806	G	A	SNP	STAT5B	NM_012448	human	genbank	57_37b	-1	reviewed	missense	c.605	p.T202M	1.000	superfamily_STAT,HMMPfam_STAT_alpha	superfamily_STAT,HMMPfam_STAT_int,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_P53_like_DNA_bnd,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2	-	no_errors	
STAT6	6778	genome.wustl.edu	37	12	57499326	57499326	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57499326	57499326	C	T	SNP	STAT6	NM_003153	human	genbank	57_37b	-1	reviewed	missense	c.737	p.G246D	0.993	HMMPfam_STAT_alpha,superfamily_STAT	superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_int,HMMPfam_STAT_alpha,superfamily_STAT,HMMPfam_STAT_bind,superfamily_p53-like transcription factors,superfamily_SH2 domain,HMMPfam_SH2,HMMSmart_SM00252	-	no_errors	
SYNE1	23345	genome.wustl.edu	37	6	152652194	152652194	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	152652194	152652194	G	A	SNP	SYNE1	NM_182961	human	genbank	57_37b	-1	reviewed	silent	c.13626	p.V4542	0.970	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,HMMPfam_KASH	-	no_errors	
USH2A	7399	genome.wustl.edu	37	1	215955505	215955505	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	215955505	215955505	C	A	SNP	USH2A	NM_206933	human	genbank	57_37b	-1	reviewed	missense	c.10619	p.G3540V	1.000	superfamily_Fibronectin type III,HMMSmart_SM00060	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors	
ZFP112	7771	genome.wustl.edu	37	19	44834085	44834085	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	44834085	44834085	C	T	SNP	ZFP112	NM_001083335	human	genbank	57_37b	-1	validated	silent	c.243	p.R81	0.875	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF527	84503	genome.wustl.edu	37	19	37879753	37879753	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	37879753	37879753	C	T	SNP	ZNF527	NM_032453	human	genbank	57_37b	+1	validated	missense	c.802	p.H268Y	0.948	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF672	79894	genome.wustl.edu	37	1	249141669	249141669	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	249141669	249141669	G	A	SNP	ZNF672	NM_024836	human	genbank	57_37b	+1	provisional	missense	c.196	p.G66S	0.662	superfamily_C2H2 and C2HC zinc fingers	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
