Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AAAS	8086	genome.wustl.edu	37	12	53714438	53714438	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53714438	53714438	G	A	SNP	AAAS	NM_015665	human	genbank	57_37b	-1	validated	silent	c.162	p.P54	0.915	NULL	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
C9orf43	257169	genome.wustl.edu	37	9	116186580	116186580	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	116186580	116186580	A	G	SNP	C9orf43	NM_152786	human	genbank	57_37b	+1	predicted	missense	c.791	p.H264R	0.870	NULL	NULL	-	no_errors	
CFB	629	genome.wustl.edu	37	6	31914024	31914024	+	Missense_Mutation	SNP	T	A	A	rs112487871	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	31914024	31914024	T	A	SNP	CFB	NM_001710	human	genbank	57_37b	+1	reviewed	missense	c.26	p.L9H	0.989	NULL	superfamily_Complement control module/SCR domain,HMMSmart_SM00032,HMMPfam_Sushi,HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,superfamily_Trypsin-like serine proteases,HMMPfam_Trypsin,HMMSmart_SM00020,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-		
ENSG00000188403	0	genome.wustl.edu	37	15	20170042	20170042	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	20170042	20170042	G	A	SNP	ENSG00000188403	ENST00000338912	human	ensembl	57_37b	-1	known	missense	c.230	p.T77I	0.114	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv	-	no_errors	
ENSG00000246457	0	genome.wustl.edu	37	7	134870856	134870856	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	134870856	134870856	C	T	SNP	ENSG00000246457	ENST00000500392	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	
GNL2	29889	genome.wustl.edu	37	1	38034775	38034775	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	38034775	38034775	G	C	SNP	GNL2	NM_013285	human	genbank	57_37b	-1	validated	missense	c.1545	p.H515Q	0.000	NULL	HMMPfam_NGP1NT,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_MMR_HSR1	-	no_errors	
HCN1	348980	genome.wustl.edu	37	5	45396610	45396610	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	45396610	45396610	C	T	SNP	HCN1	NM_021072	human	genbank	57_37b	-1	validated	missense	c.1214	p.R405Q	1.000	superfamily_SSF81324,superfamily_cNMP_binding	PatternScan_CNMP_BINDING_2,HMMPfam_Ion_trans_N,superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1	-	no_errors	
KCNT2	343450	genome.wustl.edu	37	1	196300389	196300389	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	196300389	196300389	T	C	SNP	KCNT2	NM_198503	human	genbank	57_37b	-1	validated	missense	c.2000	p.Y667C	1.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_BK_channel_a	-	no_errors	
KIAA1704	55425	genome.wustl.edu	37	13	45580344	45580344	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	45580344	45580344	A	G	SNP	KIAA1704	NM_018559	human	genbank	57_37b	+1	predicted	missense	c.229	p.R77G	0.982	NULL	NULL	-	no_errors	
LCTL	197021	genome.wustl.edu	37	15	66853388	66853388	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	66853388	66853388	G	C	SNP	LCTL	NM_207338	human	genbank	57_37b	-1	validated	missense	c.661	p.L221V	1.000	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F1_2,PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors	
LOC100289598	0	genome.wustl.edu	37	3	85008572	85008572	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	85008572	85008572	G	T	SNP	LOC100289598	XM_002342364	human	genbank	57_37b	+1	model	missense	c.469	p.V157L	1.000	NULL	NULL	-	no_errors	
MAN2B2	23324	genome.wustl.edu	37	4	6610855	6610855	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	6610855	6610855	C	T	SNP	MAN2B2	NM_015274	human	genbank	57_37b	+1	validated	silent	c.1836	p.R612	0.001	superfamily_Galactose mutarotase-like,HMMPfam_Glyco_hydro_38C	superfamily_Glycoside hydrolase/deacetylase,HMMPfam_Glyco_hydro_38,superfamily_Families 57/38 glycoside transferase middle domain,HMMPfam_Alpha-mann_mid,superfamily_Galactose mutarotase-like,HMMPfam_Glyco_hydro_38C	-	no_errors	
MRPL2	51069	genome.wustl.edu	37	6	43022206	43022206	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43022206	43022206	C	A	SNP	MRPL2	NM_015950	human	genbank	57_37b	-1	reviewed	missense	c.724	p.A242S	1.000	HMMPfam_Ribosomal_L2_C,superfamily_Transl_SH3_like	superfamily_Nucleic_acid_OB,HMMPfam_Ribosomal_L2,HMMPfam_Ribosomal_L2_C,superfamily_Transl_SH3_like	-	no_errors	
MUC4	4585	genome.wustl.edu	37	3	195508115	195508115	+	Missense_Mutation	SNP	T	T	G	rs77145082	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	195508115	195508115	T	G	SNP	MUC4	NM_018406	human	genbank	57_37b	-1	reviewed	missense	c.9952	p.T3318P	0.077	NULL	HMMSmart_SM00539,HMMPfam_NIDO,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00723,HMMPfam_AMOP,HMMSmart_SM00216,HMMPfam_VWD,PatternScan_EGF_1,HMMSmart_SM00181,superfamily_EGF/Laminin	-		
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
REXO1L1	254958	genome.wustl.edu	37	8	86573790	86573790	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	86573790	86573790	C	T	SNP	REXO1L1	NM_172239	human	genbank	57_37b	-1	validated	missense	c.1937	p.C646Y	0.011	superfamily_RNaseH_fold,HMMSmart_EXOIII,HMMPfam_Exonuc_X-T	superfamily_RNaseH_fold,HMMSmart_EXOIII,HMMPfam_Exonuc_X-T	-	no_errors	
RTN4	57142	genome.wustl.edu	37	2	55252287	55252287	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	55252287	55252287	G	T	SNP	RTN4	NM_020532	human	genbank	57_37b	-1	reviewed	missense	c.2948	p.S983Y	0.989	NULL	HMMPfam_Reticulon	-	no_errors	
RYR2	6262	genome.wustl.edu	37	1	237955580	237955580	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	237955580	237955580	C	T	SNP	RYR2	NM_001035	human	genbank	57_37b	+1	reviewed	missense	c.13739	p.T4580M	1.000	HMMPfam_RR_TM4-6	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors	
SHANK2	22941	genome.wustl.edu	37	11	70332515	70332515	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	70332515	70332515	T	C	SNP	SHANK2	NM_012309	human	genbank	57_37b	-1	reviewed	missense	c.2098	p.K700E	1.000	NULL	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1	-	no_errors	
SORCS1	114815	genome.wustl.edu	37	10	108337210	108337210	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	108337210	108337210	G	A	SNP	SORCS1	NM_052918	human	genbank	57_37b	-1	reviewed	missense	c.3475	p.R1159W	1.000	NULL	superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase,HMMSmart_SM00602,superfamily_PKD domain,HMMPfam_PKD	-	no_errors	
TECPR1	25851	genome.wustl.edu	37	7	97873994	97873994	+	Silent	SNP	G	G	A	rs1874344	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	97873994	97873994	G	A	SNP	TECPR1	NM_015395	human	genbank	57_37b	-1	provisional	silent	c.420	p.Y140	0.594	HMMSmart_SM00694	HMMSmart_SM00706,HMMSmart_SM00693,HMMSmart_SM00694,HMMPfam_Hyd_WA,superfamily_PH domain-like	-		
TRIM64B	0	genome.wustl.edu	37	11	89609144	89609144	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	89609144	89609144	A	C	SNP	TRIM64B	ENST00000329862	human	ensembl	57_37b	-1	known	missense	c.42	p.I14M	0.100	superfamily_SSF57850	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMPfam_SPRY	-	no_errors	
UBC	7316	genome.wustl.edu	37	12	125397989	125398001	+	Frame_Shift_Del	DEL	TCCTTGTCCTGGA	TCCTTGTCCTGGA	-	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	TCCTTGTCCTGGA	TCCTTGTCCTGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	125397989	125398001	TCCTTGTCCTGGA	-	DEL	UBC	NM_021009	human	genbank	57_37b	-1	validated	frame_shift_del	c.329_317	p.I106fs	1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:0.993:1.000:1.000:1.000:1.000	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,PatternScan_UBIQUITIN_1	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,PatternScan_UBIQUITIN_1	(deletion:cds_exon[125396260,125398317])	no_errors	
UBR5	51366	genome.wustl.edu	37	8	103298799	103298799	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0BD-01A-11W-A050-09	TCGA-BH-A0BD-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	103298799	103298799	C	A	SNP	UBR5	NM_015902	human	genbank	57_37b	-1	reviewed	silent	c.5004	p.S1668	0.976	NULL	HMMPfam_zf-UBR,HMMSmart_ZnF_UBR1,superfamily_HECT,superfamily_PABP_HYD,HMMPfam_PABP,HMMSmart_PolyA,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors	
