Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACSL3	2181	genome.wustl.edu	37	2	223806218	223806218	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	223806218	223806218	G	A	SNP	ACSL3	NM_004457	human	genbank	57_37b	+1	reviewed	missense	c.2009	p.S670N	1.000	superfamily_SSF56801	superfamily_SSF56801,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors	
ALS2CL	259173	genome.wustl.edu	37	3	46717150	46717150	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	46717150	46717150	C	A	SNP	ALS2CL	NM_147129	human	genbank	57_37b	-1	validated	missense	c.2213	p.R738L	0.675	superfamily_VPS9 domain (Pfam 02204)	superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698,HMMPfam_MORN,superfamily_VPS9 domain (Pfam 02204),HMMPfam_VPS9	-	no_errors	
C14orf102	55051	genome.wustl.edu	37	14	90744727	90744727	+	Missense_Mutation	SNP	G	G	A	rs78302825	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	90744727	90744727	G	A	SNP	C14orf102	NM_017970	human	genbank	57_37b	-1	validated	missense	c.3448	p.R1150W	0.988	NULL	superfamily_Prenyl_trans,HMMPfam_DUF1740	-		
C16orf80	29105	genome.wustl.edu	37	16	58149339	58149339	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	58149339	58149339	C	T	SNP	C16orf80	NM_013242	human	genbank	57_37b	-1	validated	missense	c.299	p.R100H	1.000	HMMPfam_DUF667	HMMPfam_DUF667	-	no_errors	
CNGA1	1259	genome.wustl.edu	37	4	47939288	47939288	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	47939288	47939288	G	T	SNP	CNGA1	NM_001142564	human	genbank	57_37b	-1	reviewed	missense	c.1430	p.A477E	1.000	superfamily_cAMP-binding domain-like	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2	-	no_errors	
CNOT3	4849	genome.wustl.edu	37	19	54655991	54655991	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	54655991	54655991	C	-	DEL	CNOT3	NM_014516	human	genbank	57_37b	+1	validated	frame_shift_del	c.1634	p.M546fs	1.000	NULL	HMMPfam_Not3,HMMPfam_NOT2_3_5	(deletion:cds_exon[54655963,54656062])	no_errors	
CNOT3	4849	genome.wustl.edu	37	19	54655991	54655991	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-11A-12D-A10Y-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	54655991	54655991	C	-	DEL	CNOT3	NM_014516	human	genbank	57_37b	+1	validated	frame_shift_del	c.1634	p.M546fs	1.000	NULL	HMMPfam_Not3,HMMPfam_NOT2_3_5	(deletion:cds_exon[54655963,54656062])	no_errors	
CSMD3	114788	genome.wustl.edu	37	8	113504808	113504808	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	113504808	113504808	C	A	SNP	CSMD3	NM_198123	human	genbank	57_37b	-1	validated	missense	c.5188	p.G1730C	1.000	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10	-	no_errors	
DLX5	1749	genome.wustl.edu	37	7	96653899	96653899	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	96653899	96653899	G	A	SNP	DLX5	NM_005221	human	genbank	57_37b	-1	reviewed	nonsense	c.37	p.R13*	1.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
DLX5	1749	genome.wustl.edu	37	7	96653899	96653899	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-11A-12D-A10Y-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	96653899	96653899	G	A	SNP	DLX5	NM_005221	human	genbank	57_37b	-1	reviewed	nonsense	c.37	p.R13*	1.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
ENPP3	5169	genome.wustl.edu	37	6	132041440	132041440	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	132041440	132041440	T	C	SNP	ENPP3	NM_005021	human	genbank	57_37b	+1	reviewed	silent	c.1488	p.F496	0.295	superfamily_Alkaline_phosphatase_core	HMMSmart_SO,HMMPfam_Somatomedin_B,superfamily_SSF90188,PatternScan_SMB_1,superfamily_Alkaline_phosphatase_core,HMMPfam_Phosphodiest,superfamily_SSF54060,HMMSmart_NUC	-	no_errors	
ENSG00000173818	0	genome.wustl.edu	37	17	78403668	78403668	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	78403668	78403668	C	G	SNP	ENSG00000173818	ENST00000323854	human	ensembl	57_37b	+1	known	missense	c.740	p.P247R	0.000	NULL	HMMPfam_Endonuclease_5	-	no_errors	
ENSG00000185372	0	genome.wustl.edu	37	5	180551841	180551841	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	180551841	180551841	A	T	SNP	ENSG00000185372	ENST00000329365	human	ensembl	57_37b	-1	known	missense	c.464	p.I155K	0.004	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
ENSG00000236781	0	genome.wustl.edu	37	15	22539446	22539446	+	Silent	SNP	C	C	T	rs11638593	byCluster;by2Hit2Allele;byHapMap	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-11A-12D-A10Y-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	22539446	22539446	C	T	SNP	ENSG00000236781	ENST00000443028	human	ensembl	57_37b	+1	known	silent	c.432	p.H144	0.025	NULL	NULL	-		
ENSG00000245476	0	genome.wustl.edu	37	10	72531258	72531258	+	RNA	SNP	G	G	T	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	72531258	72531258	G	T	SNP	ENSG00000245476	ENST00000499814	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	
FBL	2091	genome.wustl.edu	37	19	40331123	40331123	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	40331123	40331123	G	C	SNP	FBL	NM_001436	human	genbank	57_37b	-1	reviewed	missense	c.214	p.R72G	1.000	NULL	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Fibrillarin,PatternScan_FIBRILLARIN	-	no_errors	
FBXO44	93611	genome.wustl.edu	37	1	11718332	11718332	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	11718332	11718332	G	T	SNP	FBXO44	NM_001014765	human	genbank	57_37b	+1	reviewed	nonsense	c.274	p.E92*	0.867	HMMPfam_FBA,superfamily_Galactose-binding domain-like	superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,HMMPfam_FBA,superfamily_Galactose-binding domain-like	-	no_errors	
FBXO44	93611	genome.wustl.edu	37	1	11718332	11718332	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-11A-12D-A10Y-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	11718332	11718332	G	T	SNP	FBXO44	NM_001014765	human	genbank	57_37b	+1	reviewed	nonsense	c.274	p.E92*	0.867	HMMPfam_FBA,superfamily_Galactose-binding domain-like	superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,HMMPfam_FBA,superfamily_Galactose-binding domain-like	-	no_errors	
FCAR	2204	genome.wustl.edu	37	19	55399555	55399555	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55399555	55399555	T	C	SNP	FCAR	NM_002000	human	genbank	57_37b	+1	reviewed	silent	c.543	p.G181	0.191	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig	-	no_errors	
FYB	2533	genome.wustl.edu	37	5	39202164	39202164	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	39202164	39202164	T	C	SNP	FYB	NM_001465	human	genbank	57_37b	-1	validated	missense	c.899	p.N300S	0.000	NULL	PatternScan_XYLOSE_ISOMERASE_1,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2	-	no_errors	
GOLGB1	2804	genome.wustl.edu	37	3	121409630	121409630	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	121409630	121409630	G	A	SNP	GOLGB1	NM_004487	human	genbank	57_37b	-1	validated	nonsense	c.8566	p.R2856*	0.994	superfamily_Prefoldin	superfamily_Spectrin repeat,superfamily_Prefoldin,HMMSmart_SM00340	-	no_errors	
GOLGB1	2804	genome.wustl.edu	37	3	121409630	121409630	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-11A-12D-A10Y-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	121409630	121409630	G	A	SNP	GOLGB1	NM_004487	human	genbank	57_37b	-1	validated	nonsense	c.8566	p.R2856*	0.994	superfamily_Prefoldin	superfamily_Spectrin repeat,superfamily_Prefoldin,HMMSmart_SM00340	-	no_errors	
HLF	3131	genome.wustl.edu	37	17	53398125	53398125	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	53398125	53398125	C	T	SNP	HLF	NM_002126	human	genbank	57_37b	+1	reviewed	missense	c.773	p.S258L	0.999	HMMSmart_SM00338,HMMPfam_bZIP_2	HMMSmart_SM00338,HMMPfam_bZIP_2	-	no_errors	
HMHA1	23526	genome.wustl.edu	37	19	1084238	1084238	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1084238	1084238	A	-	DEL	HMHA1	NM_012292	human	genbank	57_37b	+1	validated	frame_shift_del	c.2957	p.D986fs	0.113	NULL	HMMSmart_FCH,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	(deletion:cds_exon[1084237,1084345])	no_errors	
HMHA1	23526	genome.wustl.edu	37	19	1084238	1084238	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-11A-12D-A10Y-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1084238	1084238	A	-	DEL	HMHA1	NM_012292	human	genbank	57_37b	+1	validated	frame_shift_del	c.2957	p.D986fs	0.113	NULL	HMMSmart_FCH,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	(deletion:cds_exon[1084237,1084345])	no_errors	
HYDIN	54768	genome.wustl.edu	37	16	70900083	70900083	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	70900083	70900083	G	T	SNP	HYDIN	NM_032821	human	genbank	57_37b	-1	validated	silent	c.11457	p.T3819	0.989	NULL	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
HYDIN	54768	genome.wustl.edu	37	16	70954676	70954676	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	70954676	70954676	G	C	SNP	HYDIN	NM_032821	human	genbank	57_37b	-1	validated	missense	c.7600	p.R2534G	1.000	NULL	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
KCNQ5	56479	genome.wustl.edu	37	6	73904812	73904812	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	73904812	73904812	A	G	SNP	KCNQ5	NM_019842	human	genbank	57_37b	+1	reviewed	missense	c.2474	p.D825G	1.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel	-	no_errors	
KRTAP4-9	85286	genome.wustl.edu	37	17	39240779	39240779	+	Silent	SNP	C	C	A	rs74195088	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-11A-12D-A10Y-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39240779	39240779	C	A	SNP	KRTAP4-9	ENST00000377731	human	ensembl	57_37b	+1	known	silent	c.321	p.P107	0.989	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2,PatternScan_TNFR_NGFR_1	-		
LRPPRC	10128	genome.wustl.edu	37	2	44209389	44209389	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-11A-12D-A10Y-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	44209389	44209389	T	G	SNP	LRPPRC	NM_133259	human	genbank	57_37b	-1	reviewed	missense	c.334	p.T112P	0.989	NULL	superfamily_SSF48452,HMMPfam_PPR	-	no_errors	
MMAA	166785	genome.wustl.edu	37	4	146560483	146560483	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	146560483	146560483	A	C	SNP	MMAA	NM_172250	human	genbank	57_37b	+1	reviewed	missense	c.192	p.K64N	0.971	NULL	HMMPfam_ArgK,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
MYO1B	4430	genome.wustl.edu	37	2	192225417	192225417	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	192225417	192225417	T	G	SNP	MYO1B	NM_001130158	human	genbank	57_37b	+1	validated	missense	c.623	p.F208C	1.000	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_Myosin_TH1	-	no_errors	
NARG2	79664	genome.wustl.edu	37	15	60741135	60741135	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	60741135	60741135	A	G	SNP	NARG2	NM_024611	human	genbank	57_37b	-1	validated	silent	c.2031	p.P677	0.000	NULL	HMMPfam_NARG2_C	-	no_errors	
NOTCH2	4853	genome.wustl.edu	37	1	120539668	120539668	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	120539668	120539668	T	A	SNP	NOTCH2	NM_024408	human	genbank	57_37b	-1	reviewed	missense	c.703	p.T235S	1.000	superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF	superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_NL,HMMPfam_Notch,superfamily_Notch_region,HMMPfam_NOD,HMMPfam_NODP,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors	
PDILT	204474	genome.wustl.edu	37	16	20396021	20396021	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	20396021	20396021	G	T	SNP	PDILT	NM_174924	human	genbank	57_37b	-1	provisional	missense	c.355	p.P119T	0.478	superfamily_Thiordxn-like_fd	PatternScan_THIOREDOXIN_1,superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,PatternScan_ER_TARGET	-	no_errors	
PDK3	5165	genome.wustl.edu	37	X	24552117	24552117	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	24552117	24552117	G	T	SNP	PDK3	NM_001142386	human	genbank	57_37b	+1	validated	silent	c.1149	p.T383	0.642	NULL	superfamily_SSF69012,HMMPfam_BCDHK_Adom3,superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMSmart_HATPase_c	-	no_errors	
PLA2G2E	30814	genome.wustl.edu	37	1	20250034	20250034	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	20250034	20250034	G	T	SNP	PLA2G2E	NM_014589	human	genbank	57_37b	-1	provisional	missense	c.19	p.L7M	0.000	NULL	PatternScan_PA2_ASP,HMMSmart_PA2c,HMMPfam_Phospholip_A2_1,superfamily_PhospholipaseA2,PatternScan_PA2_HIS	-	no_errors	
PRKCSH	5589	genome.wustl.edu	37	19	11558341	11558343	+	In_Frame_Del	DEL	GAG	GAG	-	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11558341	11558343	GAG	-	DEL	PRKCSH	NM_002743	human	genbank	57_37b	+1	reviewed	in_frame_del	c.937_939	p.E316in_frame_del	0.997:0.999:0.994	NULL	HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich,superfamily_SSF47473,PatternScan_EF_HAND_1,superfamily_Man6php_recept,HMMPfam_PRKCSH,PatternScan_ER_TARGET	(deletion:cds_exon[11558254,11558412])	no_errors	
PRPF3	9129	genome.wustl.edu	37	1	150325444	150325444	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150325444	150325444	T	A	SNP	PRPF3	NM_004698	human	genbank	57_37b	+1	reviewed	missense	c.2041	p.S681T	1.000	NULL	superfamily_PWI domain,HMMSmart_SM00311,HMMPfam_PWI,HMMPfam_PRP3	-	no_errors	
RGPD4	285190	genome.wustl.edu	37	2	108479240	108479240	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	108479240	108479240	C	T	SNP	RGPD4	NM_182588	human	genbank	57_37b	+1	validated	nonsense	c.2308	p.R770*	0.592	NULL	superfamily_SSF48452,HMMPfam_TPR_1,superfamily_SSF50729,HMMSmart_RanBD,HMMPfam_Ran_BP1,HMMPfam_GRIP,HMMSmart_Grip	-	no_errors	
RGPD4	285190	genome.wustl.edu	37	2	108479240	108479240	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-11A-12D-A10Y-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	108479240	108479240	C	T	SNP	RGPD4	NM_182588	human	genbank	57_37b	+1	validated	nonsense	c.2308	p.R770*	0.592	NULL	superfamily_SSF48452,HMMPfam_TPR_1,superfamily_SSF50729,HMMSmart_RanBD,HMMPfam_Ran_BP1,HMMPfam_GRIP,HMMSmart_Grip	-	no_errors	
RIMKLB	57494	genome.wustl.edu	37	12	8904625	8904625	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	8904625	8904625	C	T	SNP	RIMKLB	NM_020734	human	genbank	57_37b	+1	validated	missense	c.479	p.T160M	1.000	superfamily_Glutathione synthetase ATP-binding domain-like,HMMPfam_RimK	superfamily_Glutathione synthetase ATP-binding domain-like,HMMPfam_RimK	-	no_errors	
RPS6KA3	6197	genome.wustl.edu	37	X	20185730	20185730	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	20185730	20185730	C	T	SNP	RPS6KA3	NM_004586	human	genbank	57_37b	-1	reviewed	missense	c.1579	p.V527I	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C	-	no_errors	
RYR2	6262	genome.wustl.edu	37	1	237889592	237889592	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	237889592	237889592	G	A	SNP	RYR2	NM_001035	human	genbank	57_37b	+1	reviewed	missense	c.10709	p.R3570Q	0.019	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors	
SEMA4F	10505	genome.wustl.edu	37	2	74884993	74884993	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	74884993	74884993	A	G	SNP	SEMA4F	NM_004263	human	genbank	57_37b	+1	provisional	missense	c.371	p.N124S	1.000	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat	-	no_errors	
SLC25A25	114789	genome.wustl.edu	37	9	130863453	130863453	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	130863453	130863453	G	T	SNP	SLC25A25	NM_001006641	human	genbank	57_37b	+1	validated	nonsense	c.340	p.E114*	1.000	superfamily_SSF47473	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors	
SLC25A25	114789	genome.wustl.edu	37	9	130863453	130863453	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-11A-12D-A10Y-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	130863453	130863453	G	T	SNP	SLC25A25	NM_001006641	human	genbank	57_37b	+1	validated	nonsense	c.340	p.E114*	1.000	superfamily_SSF47473	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors	
SLC39A14	23516	genome.wustl.edu	37	8	22262288	22262288	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	22262288	22262288	G	-	DEL	SLC39A14	NM_001128431	human	genbank	57_37b	+1	validated	frame_shift_del	c.65	p.W22fs	0.232	NULL	HMMPfam_Zip	(deletion:cds_exon[22262224,22262493])	no_errors	
SLC39A14	23516	genome.wustl.edu	37	8	22262288	22262288	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-11A-12D-A10Y-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	22262288	22262288	G	-	DEL	SLC39A14	NM_001128431	human	genbank	57_37b	+1	validated	frame_shift_del	c.65	p.W22fs	0.232	NULL	HMMPfam_Zip	(deletion:cds_exon[22262224,22262493])	no_errors	
SSTR5	6755	genome.wustl.edu	37	16	1129206	1129206	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1129206	1129206	G	A	SNP	SSTR5	NM_001053	human	genbank	57_37b	+1	reviewed	missense	c.338	p.R113H	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
SUOX	6821	genome.wustl.edu	37	12	56397550	56397550	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56397550	56397550	T	G	SNP	SUOX	NM_000456	human	genbank	57_37b	+1	reviewed	missense	c.377	p.M126R	1.000	superfamily_Cyt_B5,HMMPfam_Cyt-b5	superfamily_Cyt_B5,HMMPfam_Cyt-b5,PatternScan_CYTOCHROME_B5_1,superfamily_Oxidored_molyb,HMMPfam_Oxidored_molyb,PatternScan_MOLYBDOPTERIN_EUK,HMMPfam_Mo-co_dimer,superfamily_Ig_E-set	-	no_errors	
TCTEX1D1	200132	genome.wustl.edu	37	1	67242936	67242936	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	67242936	67242936	T	G	SNP	TCTEX1D1	NM_152665	human	genbank	57_37b	+1	validated	silent	c.339	p.V113	0.969	HMMPfam_Tctex-1	HMMPfam_Tctex-1	-	no_errors	
TOPBP1	11073	genome.wustl.edu	37	3	133379890	133379890	+	Missense_Mutation	SNP	C	C	T	rs74738463	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	133379890	133379890	C	T	SNP	TOPBP1	NM_007027	human	genbank	57_37b	-1	reviewed	missense	c.82	p.E28K	1.000	NULL	superfamily_BRCT domain,HMMPfam_BRCT,HMMSmart_SM00292,superfamily_Uteroglobin-like	-		
TP53	7157	genome.wustl.edu	37	17	7578478	7578478	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578478	7578478	G	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.452	p.P151H	0.999	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
USP54	159195	genome.wustl.edu	37	10	75264684	75264684	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	75264684	75264684	A	G	SNP	USP54	NM_152586	human	genbank	57_37b	-1	provisional	missense	c.4235	p.L1412S	0.920	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH	-	no_errors	
VAC14	55697	genome.wustl.edu	37	16	70818087	70818087	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	70818087	70818087	T	G	SNP	VAC14	NM_018052	human	genbank	57_37b	-1	validated	missense	c.523	p.S175R	0.939	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_HEAT	-	no_errors	
VPS4B	9525	genome.wustl.edu	37	18	61064481	61064481	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	61064481	61064481	T	G	SNP	VPS4B	NM_004869	human	genbank	57_37b	-1	reviewed	missense	c.878	p.E293A	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA	HMMSmart_SM00745,HMMPfam_MIT,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,HMMPfam_Vps4_C	-	no_errors	
WDR81	124997	genome.wustl.edu	37	17	1630714	1630714	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	1630714	1630714	G	A	SNP	WDR81	ENST00000409644	human	ensembl	57_37b	+1	known	missense	c.2461	p.V821M	0.982	superfamily_WD40 repeat-like	superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,PatternScan_FBPASE,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
ZNF215	7762	genome.wustl.edu	37	11	6977547	6977547	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6977547	6977547	A	T	SNP	ZNF215	NM_013250	human	genbank	57_37b	+1	validated	missense	c.1339	p.S447C	0.000	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF330	27309	genome.wustl.edu	37	4	142154959	142154959	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BL-01A-11D-A10Y-09	TCGA-BH-A0BL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	142154959	142154959	A	G	SNP	ZNF330	NM_014487	human	genbank	57_37b	+1	validated	missense	c.779	p.D260G	0.991	HMMPfam_NOA36	HMMPfam_NOA36	-	no_errors	
