Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAMTS5	11096	genome.wustl.edu	37	21	28338423	28338423	+	Silent	SNP	C	C	G	rs55933916	byCluster;byFrequency;by1000genomes	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	28338423	28338423	C	G	SNP	ADAMTS5	NM_007038	human	genbank	57_37b	-1	reviewed	silent	c.288	p.R96	0.943	HMMPfam_Pep_M12B_propep	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-		
ATG16L1	55054	genome.wustl.edu	37	2	234201936	234201936	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	234201936	234201936	G	A	SNP	ATG16L1	NM_030803	human	genbank	57_37b	+1	validated	missense	c.1663	p.E555K	0.994	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	HMMPfam_ATG16,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
BAZ2A	11176	genome.wustl.edu	37	12	56994194	56994216	+	Frame_Shift_Del	DEL	GATATCCTCCTGGGAGTCGGAGA	GATATCCTCCTGGGAGTCGGAGA	-	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	GATATCCTCCTGGGAGTCGGAGA	GATATCCTCCTGGGAGTCGGAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56994194	56994216	GATATCCTCCTGGGAGTCGGAGA	-	DEL	BAZ2A	NM_013449	human	genbank	57_37b	-1	validated	frame_shift_del	c.4689_4667	p.L1556fs	1.000:1.000:0.998:0.966:1.000:1.000:1.000:1.000:1.000:0.974:0.968:0.976:0.927:0.998:0.999:0.997:0.983:0.862:0.004:0.004:0.000:0.000:0.714	NULL	superfamily_DNA-binding domain,HMMPfam_MBD,HMMSmart_SM00391,HMMPfam_AT_hook,HMMSmart_SM00384,HMMPfam_DDT,HMMSmart_SM00571,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	(deletion:cds_exon[56993985,56994274])	no_errors	
C6orf27	80737	genome.wustl.edu	37	6	31741200	31741200	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	31741200	31741200	C	T	SNP	C6orf27	NM_025258	human	genbank	57_37b	-1	validated	missense	c.736	p.G246R	1.000	NULL	HMMSmart_VWA,superfamily_SSF53300	-	no_errors	
CACHD1	57685	genome.wustl.edu	37	1	65120486	65120486	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	65120486	65120486	G	A	SNP	CACHD1	NM_020925	human	genbank	57_37b	+1	validated	missense	c.1629	p.M543I	1.000	"superfamily_""Winged helix"" DNA-binding domain"	"HMMPfam_VWA_N,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Cache_1,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors	
CASZ1	54897	genome.wustl.edu	37	1	10714168	10714168	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	10714168	10714168	T	C	SNP	CASZ1	NM_001079843	human	genbank	57_37b	-1	validated	missense	c.1946	p.Y649C	1.000	NULL	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
CBLB	868	genome.wustl.edu	37	3	105397361	105397361	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	105397361	105397361	G	A	SNP	CBLB	NM_170662	human	genbank	57_37b	-1	validated	missense	c.2483	p.A828V	1.000	NULL	HMMPfam_Cbl_N,superfamily_N-terminal domain of cbl (N-cbl),HMMPfam_Cbl_N2,superfamily_EF-hand,HMMPfam_Cbl_N3,superfamily_SH2 domain,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_UBA,HMMSmart_SM00165	-	no_errors	
CDH1	999	genome.wustl.edu	37	16	68842414	68842414	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68842414	68842414	C	-	DEL	CDH1	NM_004360	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.475	p.P159fs	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin	superfamily_Cadherin-like,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	(deletion:cds_exon[68842327,68842470])	no_errors	
COL17A1	1308	genome.wustl.edu	37	10	105801282	105801282	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	105801282	105801282	G	A	SNP	COL17A1	NM_000494	human	genbank	57_37b	-1	reviewed	nonsense	c.2566	p.Q856*	1.000	NULL	HMMPfam_Collagen	-	no_errors	
EEF1D	1936	genome.wustl.edu	37	8	144662795	144662795	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144662795	144662795	C	T	SNP	EEF1D	NM_001130053	human	genbank	57_37b	-1	reviewed	missense	c.1591	p.E531K	1.000	HMMPfam_EF-1_beta_acid	PatternScan_EF1BD_1,HMMPfam_EF-1_beta_acid,superfamily_eEF-1beta-like,HMMPfam_EF1_GNE,PatternScan_EF1BD_2	-	no_errors	
ENSG00000211513	0	genome.wustl.edu	37	19	47212593	47212593	+	RNA	SNP	A	A	G	rs10423365	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	47212593	47212593	A	G	SNP	ENSG00000211513	ENST00000390179	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.509	-	-	-		
ENSG00000226214	0	genome.wustl.edu	37	17	1656215	1656215	+	Silent	SNP	G	G	A	rs736060	byCluster;byFrequency;by1000genomes	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	1656215	1656215	G	A	SNP	ENSG00000226214	ENST00000458116	human	ensembl	57_37b	-1	known	silent	c.558	p.P186	0.001	NULL	NULL	-		
ENSG00000238421	0	genome.wustl.edu	37	GL000192.1	545069	545069	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	GL000192.1	545069	545069	C	T	SNP	ENSG00000238421	ENST00000459549	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors	
ENSG00000238421	0	genome.wustl.edu	37	GL000192.1	545107	545107	+	RNA	SNP	T	T	C	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	GL000192.1	545107	545107	T	C	SNP	ENSG00000238421	ENST00000459549	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors	
ERBB2	2064	genome.wustl.edu	37	17	37881000	37881000	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	37881000	37881000	G	C	SNP	ERBB2	NM_004448	human	genbank	57_37b	+1	reviewed	missense	c.2329	p.V777L	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_L domain-like,HMMPfam_Recep_L_domain,superfamily_Growth factor receptor domain,HMMPfam_Furin-like,HMMSmart_SM00261,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_EF_HAND_1,HMMPfam_YLP	-	no_errors	
FBXO18	84893	genome.wustl.edu	37	10	5945053	5945053	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	5945053	5945053	G	A	SNP	FBXO18	NM_032807	human	genbank	57_37b	+1	reviewed	silent	c.225	p.V75	0.989	NULL	superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52540	-	no_errors	
FSD1	79187	genome.wustl.edu	37	19	4311945	4311945	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4311945	4311945	G	A	SNP	FSD1	NM_024333	human	genbank	57_37b	+1	reviewed	silent	c.597	p.V199	1.000	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	HMMSmart_BBC,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMPfam_SPRY	-	no_errors	
GRID2IP	392862	genome.wustl.edu	37	7	6541690	6541690	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	6541690	6541690	C	T	SNP	GRID2IP	NM_001145118	human	genbank	57_37b	-1	validated	silent	c.3210	p.S1070	0.786	superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2	superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ,superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2	-	no_errors	
HECW1	23072	genome.wustl.edu	37	7	43484146	43484146	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	43484146	43484146	G	T	SNP	HECW1	NM_015052	human	genbank	57_37b	+1	validated	missense	c.1375	p.A459S	0.073	NULL	HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors	
HIF3A	64344	genome.wustl.edu	37	19	46842838	46842838	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46842838	46842838	G	A	SNP	HIF3A	NM_152795	human	genbank	57_37b	+1	reviewed	missense	c.1969	p.G657S	0.991	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS,HMMPfam_PAS_3,HMMSmart_SM00086	-	no_errors	
HIST2H2BE	8349	genome.wustl.edu	37	1	149858180	149858180	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	149858180	149858180	G	A	SNP	HIST2H2BE	NM_003528	human	genbank	57_37b	-1	reviewed	missense	c.11	p.P4L	0.997	NULL	superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B	-	no_errors	
IARS	3376	genome.wustl.edu	37	9	95027830	95027830	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	95027830	95027830	T	A	SNP	IARS	NM_002161	human	genbank	57_37b	-1	reviewed	silent	c.1437	p.V479	0.628	superfamily_SSF52374,HMMPfam_tRNA-synt_1	superfamily_SSF52374,HMMPfam_tRNA-synt_1,PatternScan_AA_TRNA_LIGASE_I,superfamily_ValRS_IleRS_edit,superfamily_tRNAsyn_1a_bind,HMMPfam_Anticodon_1	-	no_errors	
KIAA1199	57214	genome.wustl.edu	37	15	81171141	81171141	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	81171141	81171141	C	T	SNP	KIAA1199	NM_018689	human	genbank	57_37b	+1	validated	silent	c.174	p.I58	0.052	HMMPfam_G8	HMMPfam_G8	-	no_errors	
LOC100290868	0	genome.wustl.edu	37	9	35676607	35676607	+	RNA	SNP	G	G	A	rs2301372	byCluster;byFrequency;by1000genomes	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35676607	35676607	G	A	SNP	LOC100290868	XR_079245	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.031	-	-	-		
LOC401433	401433	genome.wustl.edu	37	7	151076661	151076661	+	RNA	SNP	G	G	C	rs11764733	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151076661	151076661	G	C	SNP	LOC401433	XR_017935	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.000	-	-	-		
MAGEA12	4111	genome.wustl.edu	37	X	151899975	151899975	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	151899975	151899975	T	G	SNP	MAGEA12	NM_005367	human	genbank	57_37b	-1	reviewed	silent	c.826	p.R276	0.401	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors	
MAN2A1	4124	genome.wustl.edu	37	5	109183450	109183450	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	109183450	109183450	C	T	SNP	MAN2A1	NM_002372	human	genbank	57_37b	+1	reviewed	silent	c.2935	p.L979	1.000	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C	superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38,superfamily_SSF88688,HMMPfam_Alpha-mann_mid,superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C	-	no_errors	
MID1	4281	genome.wustl.edu	37	X	10534972	10534972	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	10534972	10534972	C	T	SNP	MID1	NM_000381	human	genbank	57_37b	-1	reviewed	missense	c.616	p.D206N	1.000	HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMSmart_SM00336,HMMPfam_zf-B_box,superfamily_B-box zinc-binding domain,HMMSmart_SM00502,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors	
NCRNA00085	147650	genome.wustl.edu	37	19	52197329	52197330	+	RNA	INS	-	-	AG	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52197329	52197330	-	AG	INS	NCRNA00085	NR_024330	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	
ODZ3	55714	genome.wustl.edu	37	4	183721107	183721107	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	183721107	183721107	G	A	SNP	ODZ3	NM_001080477	human	genbank	57_37b	+1	provisional	missense	c.7703	p.R2568H	1.000	NULL	HMMPfam_Ten_N,HMMPfam_EGF_2,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196,HMMSmart_EGF,superfamily_CarboxypepD_reg,superfamily_SSF101898,HMMPfam_NHL,superfamily_SSF63829,HMMPfam_RHS_repeat	-	no_errors	
OR4S2	219431	genome.wustl.edu	37	11	55418854	55418854	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55418854	55418854	G	A	SNP	OR4S2	NM_001004059	human	genbank	57_37b	+1	validated	missense	c.475	p.A159T	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PCNT	5116	genome.wustl.edu	37	21	47836277	47836277	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	47836277	47836277	G	A	SNP	PCNT	NM_006031	human	genbank	57_37b	+1	reviewed	missense	c.6445	p.A2149T	0.002	NULL	HMMPfam_PACT_coil_coil	-	no_errors	
PLEKHA9	51054	genome.wustl.edu	37	12	45567613	45567613	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	45567613	45567613	C	A	SNP	PLEKHA9	NM_015899	human	genbank	57_37b	-1	provisional	missense	c.536	p.C179F	0.313	NULL	superfamily_Glycolipid_transfer_prot,HMMPfam_GLTP	-	no_errors	
PODN	127435	genome.wustl.edu	37	1	53537273	53537273	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	53537273	53537273	C	T	SNP	PODN	NM_153703	human	genbank	57_37b	+1	validated	silent	c.523	p.L175	1.000	superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1	superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRR_TYP,HMMPfam_LRR_1,superfamily_SSF52047	-	no_errors	
PRMT10	90826	genome.wustl.edu	37	4	148575485	148575485	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	148575485	148575485	T	C	SNP	PRMT10	NM_138364	human	genbank	57_37b	-1	provisional	silent	c.1563	p.E521	0.899	NULL	superfamily_TPR-like,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors	
RIC3	79608	genome.wustl.edu	37	11	8161556	8161556	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	8161556	8161556	G	A	SNP	RIC3	NM_024557	human	genbank	57_37b	-1	validated	silent	c.309	p.Y103	1.000	NULL	NULL	-	no_errors	
RUNX1	861	genome.wustl.edu	37	21	36252958	36252958	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	36252958	36252958	C	T	SNP	RUNX1	NM_001754	human	genbank	57_37b	-1	reviewed	missense	c.404	p.G135D	1.000	HMMPfam_Runt,superfamily_p53-like transcription factors	HMMPfam_Runt,superfamily_p53-like transcription factors,HMMPfam_RunxI	-	no_errors	
SCAP	22937	genome.wustl.edu	37	3	47467065	47467065	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	47467065	47467065	G	A	SNP	SCAP	NM_012235	human	genbank	57_37b	-1	reviewed	missense	c.947	p.A316V	1.000	superfamily_Multidrug efflux transporter AcrB transmembrane domain	superfamily_Multidrug efflux transporter AcrB transmembrane domain,HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
STARD8	9754	genome.wustl.edu	37	X	67940160	67940160	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	67940160	67940160	C	T	SNP	STARD8	NM_001142503	human	genbank	57_37b	+1	validated	silent	c.1944	p.H648	0.914	NULL	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234	-	no_errors	
TMEM132C	92293	genome.wustl.edu	37	12	128899678	128899678	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	128899678	128899678	G	A	SNP	TMEM132C	NM_001136103	human	genbank	57_37b	+1	provisional	missense	c.151	p.A51T	0.025	NULL	NULL	-	no_errors	
TRADD	8717	genome.wustl.edu	37	16	67190466	67190466	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67190466	67190466	G	A	SNP	TRADD	NM_003789	human	genbank	57_37b	-1	reviewed	missense	c.98	p.A33V	0.032	superfamily_TRADD N-terminal domain	superfamily_TRADD N-terminal domain,HMMPfam_TRADD_N,HMMSmart_SM00005,superfamily_DEATH domain,HMMPfam_Death	-	no_errors	
VPS35	55737	genome.wustl.edu	37	16	46695632	46695632	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	46695632	46695632	C	T	SNP	VPS35	NM_018206	human	genbank	57_37b	-1	reviewed	missense	c.2209	p.A737T	1.000	HMMPfam_Vps35	HMMPfam_Vps35	-	no_errors	
YAP1	10413	genome.wustl.edu	37	11	102100570	102100570	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	102100570	102100570	C	T	SNP	YAP1	NM_001130145	human	genbank	57_37b	+1	reviewed	missense	c.1414	p.P472S	1.000	NULL	superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1	-	no_errors	
YME1L1	10730	genome.wustl.edu	37	10	27436575	27436575	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	27436575	27436575	G	A	SNP	YME1L1	NM_139312	human	genbank	57_37b	-1	reviewed	missense	c.191	p.T64M	0.039	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,HMMPfam_Peptidase_M41	-	no_errors	
ZNF841	284371	genome.wustl.edu	37	19	52569331	52569331	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0C1-01B-11D-A12B-09	TCGA-BH-A0C1-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52569331	52569331	A	C	SNP	ZNF841	NM_001136499	human	genbank	57_37b	-1	validated	missense	c.1804	p.C602G	0.835	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_IG_MHC	-	no_errors	
