Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADCK5	203054	genome.wustl.edu	37	8	145617910	145617910	+	Silent	SNP	A	A	G	rs7843675	byCluster;by2Hit2Allele;by1000genomes	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145617910	145617910	A	G	SNP	ADCK5	NM_174922	human	genbank	57_37b	+1	validated	silent	c.1518	p.K506	1.000	NULL	superfamily_Kinase_like,HMMPfam_ABC1	-		
AMELX	265	genome.wustl.edu	37	X	11316986	11316986	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	11316986	11316986	C	T	SNP	AMELX	NM_182680	human	genbank	57_37b	+1	reviewed	nonsense	c.505	p.Q169*	1.000	HMMPfam_Amelogenin,HMMSmart_SM00818	HMMPfam_Amelogenin,HMMSmart_SM00818	-	no_errors	
AQP2	359	genome.wustl.edu	37	12	50344816	50344816	+	Missense_Mutation	SNP	A	A	C	rs104894331	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	50344816	50344816	A	C	SNP	AQP2	NM_000486	human	genbank	57_37b	+1	reviewed	missense	c.203	p.N68T	1.000	superfamily_MIP,HMMPfam_MIP,PatternScan_MIP	superfamily_MIP,HMMPfam_MIP,PatternScan_MIP	-		
CACNA1H	8912	genome.wustl.edu	37	16	1270162	1270162	+	Missense_Mutation	SNP	G	G	A	rs1054645	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1270162	1270162	G	A	SNP	CACNA1H	NM_021098	human	genbank	57_37b	+1	reviewed	missense	c.6230	p.R2077H	0.645	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-		
FUT2	2524	genome.wustl.edu	37	19	49206674	49206674	+	Nonsense_Mutation	SNP	G	G	A	rs601338	byCluster;byFrequency;by2Hit2Allele	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49206674	49206674	G	A	SNP	FUT2	NM_000511	human	genbank	57_37b	+1	reviewed	nonsense	c.461	p.W154*	1.000	HMMPfam_Glyco_transf_11	HMMPfam_Glyco_transf_11	-		
HAVCR1	26762	genome.wustl.edu	37	5	156482387	156482387	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	156482387	156482387	G	A	SNP	HAVCR1	NM_001099414	human	genbank	57_37b	-1	reviewed	silent	c.204	p.H68	0.000	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_V-set	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_V-set,PatternScan_IG_MHC	-	no_errors	
HNRNPR	10236	genome.wustl.edu	37	1	23650213	23650213	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	23650213	23650213	T	G	SNP	HNRNPR	NM_001102398	human	genbank	57_37b	-1	reviewed	missense	c.511	p.K171Q	1.000	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors	
IGF1R	3480	genome.wustl.edu	37	15	99456511	99456511	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	99456511	99456511	G	A	SNP	IGF1R	NM_000875	human	genbank	57_37b	+1	reviewed	missense	c.1828	p.V610I	1.000	superfamily_FN_III-like	superfamily_SSF52058,HMMPfam_Recep_L_domain,HMMPfam_Furin-like,superfamily_Grow_fac_recept,HMMSmart_FU,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	-	no_errors	
ITPR1	3708	genome.wustl.edu	37	3	4856841	4856841	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	4856841	4856841	T	C	SNP	ITPR1	NM_001099952	human	genbank	57_37b	+1	reviewed	silent	c.7662	p.A2554	0.047	NULL	HMMPfam_Ins145_P3_rec,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472,HMMPfam_MIR,superfamily_IP3 receptor type 1 binding core domain 2,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans	-	no_errors	
KIAA1632	57724	genome.wustl.edu	37	18	43534880	43534880	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	43534880	43534880	G	A	SNP	KIAA1632	NM_020964	human	genbank	57_37b	-1	validated	missense	c.488	p.T163I	0.011	NULL	NULL	-	no_errors	
KIRREL	55243	genome.wustl.edu	37	1	158059318	158059318	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158059318	158059318	G	T	SNP	KIRREL	NM_018240	human	genbank	57_37b	+1	validated	silent	c.1071	p.L357	0.993	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_C2-set_2,HMMPfam_I-set	-	no_errors	
LFNG	3955	genome.wustl.edu	37	7	2564376	2564376	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	2564376	2564376	G	A	SNP	LFNG	NM_001040167	human	genbank	57_37b	+1	reviewed	silent	c.480	p.T160	0.997	HMMPfam_Fringe	HMMPfam_Fringe	-	no_errors	
LOC100290441	0	genome.wustl.edu	37	5	464153	464153	+	Missense_Mutation	SNP	C	C	T	rs2561667	byCluster;byFrequency;by1000genomes	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	464153	464153	C	T	SNP	LOC100290441	XM_002346666	human	genbank	57_37b	+1	model	missense	c.439	p.R147C	0.000	NULL	NULL	-		
MIIP	60672	genome.wustl.edu	37	1	12082461	12082461	+	Missense_Mutation	SNP	C	C	T	rs11588712	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	12082461	12082461	C	T	SNP	MIIP	NM_021933	human	genbank	57_37b	+1	validated	missense	c.424	p.P142S	0.001	NULL	NULL	-		
NHS	4810	genome.wustl.edu	37	X	17745442	17745443	+	Frame_Shift_Del	DEL	TA	TA	-	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	17745442	17745443	TA	-	DEL	NHS	NM_198270	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.3153_3154	p.S1053fs	0.007:0.000	NULL	NULL	(deletion:cds_exon[17743467,17746448])	no_errors	
PKD1	5310	genome.wustl.edu	37	16	2161666	2161666	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2161666	2161666	G	A	SNP	PKD1	NM_001009944	human	genbank	57_37b	-1	reviewed	missense	c.3502	p.P1168S	0.207	HMMSmart_SM00089,HMMPfam_PKD,superfamily_PKD domain	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,HMMSmart_SM00321,HMMPfam_WSC,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,HMMPfam_REJ,HMMPfam_GPS,HMMSmart_SM00303,HMMSmart_SM00308,HMMPfam_PLAT,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel	-	no_errors	
RPS6KA2	6196	genome.wustl.edu	37	6	166912078	166912078	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	166912078	166912078	G	A	SNP	RPS6KA2	NM_001006932	human	genbank	57_37b	-1	reviewed	missense	c.689	p.T230M	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C	-	no_errors	
RUNX1	861	genome.wustl.edu	37	21	36231791	36231791	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	36231791	36231791	T	C	SNP	RUNX1	NM_001754	human	genbank	57_37b	-1	reviewed	missense	c.593	p.D198G	1.000	HMMPfam_Runt,superfamily_p53-like transcription factors	HMMPfam_Runt,superfamily_p53-like transcription factors,HMMPfam_RunxI	-	no_errors	
TMEM132A	54972	genome.wustl.edu	37	11	60695301	60695301	+	Silent	SNP	C	A	A	rs575123	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	60695301	60695301	C	A	SNP	TMEM132A	NM_017870	human	genbank	57_37b	+1	reviewed	silent	c.504	p.A168	0.000	NULL	NULL	-		
TNFRSF10C	8794	genome.wustl.edu	37	8	22973124	22973124	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	22973124	22973124	T	C	SNP	TNFRSF10C	NM_003841	human	genbank	57_37b	+1	reviewed	silent	c.384	p.C128	0.000	superfamily_TNF receptor-like,PatternScan_TNFR_NGFR_1,HMMPfam_TNFR_c6,HMMSmart_SM00208	superfamily_TNF receptor-like,HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578371	7578371	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578371	7578371	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.559	p.G187S	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
UCK2	7371	genome.wustl.edu	37	1	165872480	165872480	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	165872480	165872480	G	C	SNP	UCK2	NM_012474	human	genbank	57_37b	+1	reviewed	silent	c.561	p.T187	0.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_PRK	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_PRK	-	no_errors	
ZNF462	58499	genome.wustl.edu	37	9	109771874	109771874	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	109771874	109771874	G	A	SNP	ZNF462	NM_021224	human	genbank	57_37b	+1	validated	missense	c.7238	p.R2413H	1.000	superfamily_beta-sandwich domain of Sec23/24,superfamily_C2H2 and C2HC zinc fingers	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_beta-sandwich domain of Sec23/24	-	no_errors	
