Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCA9	10350	genome.wustl.edu	37	17	67004302	67004302	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	67004302	67004302	A	G	SNP	ABCA9	NM_080283	human	genbank	57_37b	-1	reviewed	silent	c.3222	p.D1074	0.038	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	-	no_errors	
BSN	8927	genome.wustl.edu	37	3	49689964	49689964	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49689964	49689964	C	T	SNP	BSN	NM_003458	human	genbank	57_37b	+1	reviewed	missense	c.2975	p.S992L	0.990	NULL	HMMPfam_zf-piccolo,superfamily_FYVE_PHD_ZnF	-	no_errors	
BTBD17	388419	genome.wustl.edu	37	17	72352897	72352897	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72352897	72352897	C	A	SNP	BTBD17	NM_001080466	human	genbank	57_37b	-1	provisional	missense	c.1336	p.D446Y	1.000	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK	-	no_errors	
CACNA1C	775	genome.wustl.edu	37	12	2602428	2602428	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	2602428	2602428	C	T	SNP	CACNA1C	NM_199460	human	genbank	57_37b	+1	reviewed	missense	c.989	p.T330M	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors	
CCDC64B	146439	genome.wustl.edu	37	16	3078165	3078165	+	Missense_Mutation	SNP	A	A	G	rs12448103	byCluster;byHapMap;by1000genomes	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	3078165	3078165	A	G	SNP	CCDC64B	NM_001103175	human	genbank	57_37b	-1	validated	missense	c.1469	p.L490P	0.287	NULL	NULL	-		
CD180	4064	genome.wustl.edu	37	5	66479382	66479382	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	66479382	66479382	G	A	SNP	CD180	NM_005582	human	genbank	57_37b	-1	validated	missense	c.1289	p.T430I	0.941	superfamily_L domain-like	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT	-	no_errors	
CEACAM6	4680	genome.wustl.edu	37	19	42270133	42270133	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42270133	42270133	C	T	SNP	CEACAM6	NM_002483	human	genbank	57_37b	+1	validated	missense	c.1001	p.T334M	0.002	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors	
CHD4	1108	genome.wustl.edu	37	12	6710887	6710887	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6710887	6710887	C	T	SNP	CHD4	NM_001273	human	genbank	57_37b	-1	reviewed	missense	c.484	p.D162N	1.000	NULL	HMMPfam_CHDNT,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00298,superfamily_Chromo domain-like,PatternScan_CHROMO_1,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_DUF1087,HMMPfam_DUF1086,HMMPfam_CHDCT2	-	no_errors	
DISP2	85455	genome.wustl.edu	37	15	40660863	40660863	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	40660863	40660863	C	T	SNP	DISP2	NM_033510	human	genbank	57_37b	+1	reviewed	silent	c.2550	p.C850	0.198	NULL	superfamily_SSF82866	-	no_errors	
DNAH10	196385	genome.wustl.edu	37	12	124323215	124323215	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	124323215	124323215	C	T	SNP	DNAH10	NM_207437	human	genbank	57_37b	+1	validated	silent	c.4761	p.C1587	1.000	HMMPfam_DHC_N2	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
E2F3	1871	genome.wustl.edu	37	6	20488429	20488432	+	Frame_Shift_Del	DEL	AAAC	AAAC	-	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	AAAC	AAAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	20488429	20488432	AAAC	-	DEL	E2F3	NM_001949	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1085_1088	p.N364fs	1.000:1.000:0.996:0.996	NULL	superfamily_SSF46785,HMMPfam_E2F_TDP	(deletion:cds_exon[20488344,20488479])	no_errors	
EBF1	1879	genome.wustl.edu	37	5	158523388	158523388	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	158523388	158523388	G	A	SNP	EBF1	NM_024007	human	genbank	57_37b	-1	validated	silent	c.318	p.N106	0.968	NULL	PatternScan_COE,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG	-	no_errors	
ENSG00000241763	0	genome.wustl.edu	37	20	60562181	60562181	+	RNA	SNP	C	C	A	rs6142910	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60562181	60562181	C	A	SNP	ENSG00000241763	ENST00000419757	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000246304	0	genome.wustl.edu	37	5	138729303	138729303	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	138729303	138729303	C	T	SNP	ENSG00000246304	ENST00000499862	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	
ENSG00000246495	0	genome.wustl.edu	37	21	44265844	44265844	+	RNA	SNP	C	C	G	rs62215009	byCluster	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	44265844	44265844	C	G	SNP	ENSG00000246495	ENST00000499216	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.006	-	-	-		
ENSG00000247765	0	genome.wustl.edu	37	15	21941688	21941688	+	RNA	SNP	G	G	A	rs4984119	byCluster;by2Hit2Allele	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	21941688	21941688	G	A	SNP	ENSG00000247765	ENST00000500487	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.000	-	-	-		
EPB41L1	2036	genome.wustl.edu	37	20	34761811	34761811	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	34761811	34761811	G	A	SNP	EPB41L1	NM_012156	human	genbank	57_37b	+1	reviewed	missense	c.112	p.G38S	1.000	NULL	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA,HMMPfam_SAB,HMMPfam_4_1_CTD	-	no_errors	
FAM185A	222234	genome.wustl.edu	37	7	102390050	102390050	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	102390050	102390050	G	T	SNP	FAM185A	NM_001145268	human	genbank	57_37b	+1	validated	silent	c.396	p.V132	0.139	NULL	NULL	-	no_errors	
FASTKD1	79675	genome.wustl.edu	37	2	170403132	170403132	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	170403132	170403132	C	T	SNP	FASTKD1	NM_024622	human	genbank	57_37b	-1	validated	missense	c.1297	p.E433K	0.986	NULL	HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP	-	no_errors	
FCGRT	2217	genome.wustl.edu	37	19	50017150	50017150	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50017150	50017150	T	A	SNP	FCGRT	NM_001136019	human	genbank	57_37b	+1	reviewed	missense	c.85	p.S29T	0.151	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC	-	no_errors	
FREM3	166752	genome.wustl.edu	37	4	144545442	144545442	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	144545442	144545442	C	T	SNP	FREM3	ENST00000329798	human	ensembl	57_37b	-1	known	nonsense	c.5472	p.W1824*	0.998	HMMSmart_SM00237,HMMPfam_Calx-beta	HMMSmart_SM00237,HMMPfam_Calx-beta	-	no_errors	
GZMM	3004	genome.wustl.edu	37	19	549171	549171	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	549171	549171	C	T	SNP	GZMM	NM_005317	human	genbank	57_37b	+1	reviewed	nonsense	c.598	p.Q200*	0.001	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
IDH1	3417	genome.wustl.edu	37	2	209106864	209106864	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	209106864	209106864	T	C	SNP	IDH1	NM_005896	human	genbank	57_37b	-1	reviewed	missense	c.704	p.Y235C	1.000	superfamily_Isocitrate/Isopropylmalate dehydrogenase-like,HMMPfam_Iso_dh	superfamily_Isocitrate/Isopropylmalate dehydrogenase-like,HMMPfam_Iso_dh,PatternScan_IDH_IMDH	-	no_errors	
KIF19	124602	genome.wustl.edu	37	17	72353000	72353000	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72353000	72353000	C	T	SNP	KIF19	ENST00000440684	human	ensembl	57_37b	+1	known	missense	c.1486	p.L496F	1.000	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors	
LAMC3	10319	genome.wustl.edu	37	9	133945108	133945108	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	133945108	133945108	C	T	SNP	LAMC3	NM_006059	human	genbank	57_37b	+1	reviewed	silent	c.2940	p.N980	1.000	HMMSmart_EGF_Lam,HMMPfam_Laminin_EGF,superfamily_SSF57196	HMMSmart_LamNT,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMPfam_Laminin_B,PatternScan_EGF_2	-	no_errors	
LHX6	26468	genome.wustl.edu	37	9	124989262	124989262	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	124989262	124989262	C	T	SNP	LHX6	NM_014368	human	genbank	57_37b	-1	reviewed	silent	c.204	p.E68	0.999	NULL	superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
MARK4	57787	genome.wustl.edu	37	19	45766396	45766396	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	45766396	45766396	C	T	SNP	MARK4	NM_031417	human	genbank	57_37b	+1	provisional	missense	c.278	p.T93I	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMPfam_UBA,HMMSmart_UBA	-	no_errors	
MYL9	10398	genome.wustl.edu	37	20	35177631	35177631	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	35177631	35177631	C	T	SNP	MYL9	NM_006097	human	genbank	57_37b	+1	reviewed	silent	c.498	p.G166	0.611	superfamily_EF-hand	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors	
NOSTRIN	115677	genome.wustl.edu	37	2	169711935	169711936	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	169711935	169711936	AG	-	DEL	NOSTRIN	NM_001039724	human	genbank	57_37b	+1	validated	frame_shift_del	c.929_930	p.D312fs	0.993:0.663	NULL	HMMPfam_FCH,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	(deletion:cds_exon[169711862,169711970])	no_errors	
NUMB	8650	genome.wustl.edu	37	14	73753912	73753912	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	73753912	73753912	G	T	SNP	NUMB	NM_001005743	human	genbank	57_37b	-1	reviewed	silent	c.561	p.T187	1.000	NULL	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,HMMPfam_NumbF	-	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PKN1	5585	genome.wustl.edu	37	19	14581448	14581448	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	14581448	14581448	G	A	SNP	PKN1	NM_213560	human	genbank	57_37b	+1	reviewed	missense	c.2516	p.R839H	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_HR1 repeat,HMMSmart_SM00742,HMMPfam_HR1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-	no_errors	
POLR2B	5431	genome.wustl.edu	37	4	57896566	57896566	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	57896566	57896566	G	T	SNP	POLR2B	NM_000938	human	genbank	57_37b	+1	reviewed	splice_site	c.3435+1	e24+1	1.000	-	-	-	no_errors	
PRPF38B	55119	genome.wustl.edu	37	1	109238699	109238699	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	109238699	109238699	C	G	SNP	PRPF38B	NM_018061	human	genbank	57_37b	+1	validated	missense	c.380	p.T127R	1.000	HMMPfam_PRP38	HMMPfam_PRP38	-	no_errors	
PTGS2	5743	genome.wustl.edu	37	1	186646005	186646005	+	Missense_Mutation	SNP	C	C	T	rs3218622	byCluster;byFrequency	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	186646005	186646005	C	T	SNP	PTGS2	NM_000963	human	genbank	57_37b	-1	reviewed	missense	c.683	p.R228H	1.000	superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase	superfamily_EGF/Laminin,HMMPfam_EGF,superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase	-		
PTPRR	5801	genome.wustl.edu	37	12	71286478	71286478	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	71286478	71286478	G	A	SNP	PTPRR	NM_002849	human	genbank	57_37b	-1	reviewed	missense	c.338	p.A113V	0.987	NULL	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
RAB11FIP3	9727	genome.wustl.edu	37	16	476430	476430	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	476430	476430	C	G	SNP	RAB11FIP3	NM_014700	human	genbank	57_37b	+1	validated	missense	c.424	p.P142A	0.000	NULL	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_RBD-FIP	-	no_errors	
RAB2A	5862	genome.wustl.edu	37	8	61531179	61531179	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	61531179	61531179	A	-	DEL	RAB2A	NM_002865	human	genbank	57_37b	+1	provisional	frame_shift_del	c.515	p.E173fs	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00176	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,PatternScan_SIGMA54_INTERACT_1,HMMSmart_SM00174,HMMSmart_SM00176	(deletion:cds_exon[61531139,61531207])	no_errors	
RPS6	6194	genome.wustl.edu	37	9	19380191	19380191	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	19380191	19380191	C	T	SNP	RPS6	NM_001010	human	genbank	57_37b	-1	reviewed	missense	c.3	p.M1I	1.000	HMMPfam_Ribosomal_S6e	HMMPfam_Ribosomal_S6e,PatternScan_RIBOSOMAL_S6E	-	no_errors	
SDCCAG8	10806	genome.wustl.edu	37	1	243434319	243434319	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	243434319	243434319	A	G	SNP	SDCCAG8	NM_006642	human	genbank	57_37b	+1	validated	missense	c.260	p.K87R	0.859	NULL	NULL	-	no_errors	
SEMA6B	10501	genome.wustl.edu	37	19	4558431	4558431	+	Silent	SNP	C	G	G	rs2304213	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4558431	4558431	C	G	SNP	SEMA6B	NM_032108	human	genbank	57_37b	-1	reviewed	silent	c.39	p.L13	0.711	NULL	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,superfamily_Plexin repeat	-		
SIN3B	23309	genome.wustl.edu	37	19	16965008	16965008	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	16965008	16965008	G	A	SNP	SIN3B	NM_015260	human	genbank	57_37b	+1	provisional	missense	c.994	p.A332T	0.987	superfamily_PAH2 domain,HMMPfam_PAH	superfamily_PAH2 domain,HMMPfam_PAH,HMMPfam_HDAC_interact,HMMSmart_SM00761	-	no_errors	
STAG1	10274	genome.wustl.edu	37	3	136076560	136076560	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	136076560	136076560	A	G	SNP	STAG1	NM_005862	human	genbank	57_37b	-1	reviewed	splice_site	c.3065+2	e27+2	1.000	-	-	-	no_errors	
TNFRSF10B	8795	genome.wustl.edu	37	8	22926498	22926498	+	RNA	SNP	G	G	A	rs11135695	byCluster;byHapMap;by1000genomes	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	22926498	22926498	G	A	SNP	TNFRSF10B	NR_027140	human	genbank	57_37b	-1	reviewed	rna	NULL	NULL	0.000	-	-	-		
ZNF366	167465	genome.wustl.edu	37	5	71739899	71739899	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0DD-01A-31D-A12Q-09	TCGA-BH-A0DD-11A-23D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	71739899	71739899	T	A	SNP	ZNF366	NM_152625	human	genbank	57_37b	-1	provisional	missense	c.1919	p.Q640L	0.008	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
