Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ALOX12	239	genome.wustl.edu	37	17	6900318	6900318	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	6900318	6900318	G	C	SNP	ALOX12	NM_000697	human	genbank	57_37b	+1	validated	missense	c.309	p.E103D	0.010	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase,superfamily_Lipoxygenase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_1,PatternScan_LIPOXYGENASE_2	-	no_errors	
AUTS2	26053	genome.wustl.edu	37	7	70252221	70252221	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	70252221	70252221	G	T	SNP	AUTS2	NM_015570	human	genbank	57_37b	+1	validated	missense	c.2335	p.D779Y	1.000	NULL	NULL	-	no_errors	
BRP44	25874	genome.wustl.edu	37	1	167889845	167889845	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	167889845	167889845	C	T	SNP	BRP44	NM_001143674	human	genbank	57_37b	-1	validated	missense	c.175	p.D59N	1.000	HMMPfam_UPF0041	HMMPfam_UPF0041	-	no_errors	
C21orf128	150147	genome.wustl.edu	37	21	43523430	43523430	+	RNA	SNP	G	G	T	rs8129075	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	43523430	43523430	G	T	SNP	C21orf128	NR_027243	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-		
CBX2	84733	genome.wustl.edu	37	17	77758181	77758181	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	77758181	77758181	C	T	SNP	CBX2	NM_005189	human	genbank	57_37b	+1	reviewed	silent	c.939	p.S313	0.013	NULL	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,PatternScan_CHROMO_1	-	no_errors	
CBX8	57332	genome.wustl.edu	37	17	77768660	77768660	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	77768660	77768660	C	T	SNP	CBX8	NM_020649	human	genbank	57_37b	-1	provisional	missense	c.944	p.S315N	0.060	NULL	superfamily_Chromodomain-like,HMMSmart_CHROMO,HMMPfam_Chromo,PatternScan_CHROMO_1	-	no_errors	
CERKL	375298	genome.wustl.edu	37	2	182438569	182438569	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	182438569	182438569	G	T	SNP	CERKL	NM_001030311	human	genbank	57_37b	-1	validated	missense	c.524	p.P175H	1.000	HMMPfam_DAGK_cat	HMMPfam_DAGK_cat	-	no_errors	
CTCF	10664	genome.wustl.edu	37	16	67645922	67645922	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67645922	67645922	C	A	SNP	CTCF	NM_006565	human	genbank	57_37b	+1	reviewed	missense	c.850	p.H284N	1.000	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	
DNAH9	1770	genome.wustl.edu	37	17	11597194	11597194	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	11597194	11597194	A	G	SNP	DNAH9	NM_001372	human	genbank	57_37b	+1	reviewed	missense	c.4624	p.R1542G	1.000	HMMPfam_DHC_N2	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2	-	no_errors	
ENSG00000246300	0	genome.wustl.edu	37	6	31657701	31657701	+	RNA	SNP	C	A	A	rs114362283	byCluster;by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	31657701	31657701	C	A	SNP	ENSG00000246300	ENST00000500552	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.113	-	-	-		
ENSG00000246782	0	genome.wustl.edu	37	17	5190364	5190364	+	RNA	SNP	C	G	G	rs7221692	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	5190364	5190364	C	G	SNP	ENSG00000246782	ENST00000500938	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.491	-	-	-		
ENSG00000246830	0	genome.wustl.edu	37	1	23834486	23834486	+	RNA	SNP	G	A	A	rs3820028	byCluster;byFrequency;by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	23834486	23834486	G	A	SNP	ENSG00000246830	ENST00000500280	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000247210	0	genome.wustl.edu	37	5	10710716	10710716	+	RNA	SNP	A	G	G	rs267988	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	10710716	10710716	A	G	SNP	ENSG00000247210	ENST00000499915	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000247772	0	genome.wustl.edu	37	11	47379060	47379061	+	RNA	DEL	CA	CA	-	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47379060	47379061	CA	-	DEL	ENSG00000247772	ENST00000499849	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.212:0.226	-	-	(deletion:rna[47376886,47379300])	no_errors	
FAT4	79633	genome.wustl.edu	37	4	126239428	126239428	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	126239428	126239428	C	T	SNP	FAT4	NM_024582	human	genbank	57_37b	+1	validated	missense	c.1862	p.S621F	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_EGF,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors	
FLJ39632	642477	genome.wustl.edu	37	14	19891054	19891055	+	RNA	DEL	CT	CT	-	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	19891054	19891055	CT	-	DEL	FLJ39632	XR_015133	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.056:0.047	-	-	(deletion:rna[19887179,19891953])	no_errors	
FLJ39632	642477	genome.wustl.edu	37	14	19891054	19891055	+	RNA	DEL	CT	CT	-	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	19891054	19891055	CT	-	DEL	FLJ39632	XR_015133	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.056:0.047	-	-	(deletion:rna[19887179,19891953])	no_errors	
FLJ44054	643365	genome.wustl.edu	37	13	114623821	114623821	+	RNA	SNP	G	A	A	rs41284486	byCluster;byFrequency;by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	114623821	114623821	G	A	SNP	FLJ44054	NR_024609	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000	-	-	-		
GPR162	27239	genome.wustl.edu	37	12	6939134	6939134	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6939134	6939134	C	T	SNP	GPR162	ENST00000290510	human	ensembl	57_37b	+1	known	missense	c.607	p.R203W	0.079	NULL	HMMSmart_SM00702,PatternScan_ER_TARGET	-	no_errors	
GPR50	9248	genome.wustl.edu	37	X	150349192	150349192	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	150349192	150349192	C	T	SNP	GPR50	NM_004224	human	genbank	57_37b	+1	reviewed	silent	c.1137	p.P379	0.000	NULL	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_TRYPSIN_HIS	-	no_errors	
GUCA2B	2981	genome.wustl.edu	37	1	42621219	42621219	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	42621219	42621219	C	T	SNP	GUCA2B	NM_007102	human	genbank	57_37b	+1	validated	silent	c.291	p.N97	0.000	HMMPfam_Guanylin,superfamily_Guanylin	HMMPfam_Guanylin,superfamily_Guanylin	-	no_errors	
HMCN1	83872	genome.wustl.edu	37	1	186072719	186072719	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	186072719	186072719	G	A	SNP	HMCN1	NM_031935	human	genbank	57_37b	+1	reviewed	missense	c.10689	p.M3563I	1.000	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406	superfamily_vWA-like,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408,HMMPfam_I-set,HMMSmart_SM00406,PatternScan_CECROPIN,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00682,HMMPfam_G2F,superfamily_GFP-like,PatternScan_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMPfam_EGF_CA,PatternScan_EGF_2	-	no_errors	
IGDCC3	9543	genome.wustl.edu	37	15	65621396	65621396	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	65621396	65621396	C	T	SNP	IGDCC3	NM_004884	human	genbank	57_37b	-1	validated	missense	c.2296	p.E766K	0.002	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
KIAA1751	85452	genome.wustl.edu	37	1	1888168	1888168	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1888168	1888168	G	A	SNP	KIAA1751	NM_001080484	human	genbank	57_37b	-1	predicted	missense	c.1907	p.T636M	0.003	NULL	NULL	-	no_errors	
KRT8P12	0	genome.wustl.edu	37	3	160285898	160285898	+	Silent	SNP	C	C	T	rs4679895	byCluster;by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	160285898	160285898	C	T	SNP	KRT8P12	ENST00000427889	human	ensembl	57_37b	+1	known	silent	c.75	p.I25	1.000	NULL	HMMPfam_Filament	-		
LASP1	3927	genome.wustl.edu	37	17	37074895	37074895	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	37074895	37074895	A	C	SNP	LASP1	NM_006148	human	genbank	57_37b	+1	validated	missense	c.650	p.D217A	1.000	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,HMMSmart_SM00227,HMMPfam_Nebulin,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
LETM1	3954	genome.wustl.edu	37	4	1838164	1838164	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	1838164	1838164	A	T	SNP	LETM1	NM_012318	human	genbank	57_37b	-1	reviewed	missense	c.730	p.S244T	1.000	HMMPfam_LETM1	HMMPfam_LETM1,PatternScan_EF_HAND_1	-	no_errors	
LOC100128069	0	genome.wustl.edu	37	11	71093699	71093699	+	Missense_Mutation	SNP	C	T	T	rs1660838	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	71093699	71093699	C	T	SNP	LOC100128069	XM_002343099	human	genbank	57_37b	-1	model	missense	c.347	p.S116N	0.021	superfamily_Actin-like ATPase domain,HMMPfam_Actin	superfamily_Actin-like ATPase domain,HMMPfam_Actin	-		
LOC100288541	0	genome.wustl.edu	37	7	148862284	148862284	+	Splice_Site	SNP	C	T	T	rs12154382	byCluster;byFrequency;by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	148862284	148862284	C	T	SNP	LOC100288541	XM_002342803	human	genbank	57_37b	-1	model	splice_site	c.623+1	e3+1	0.009	-	-	-		
LOC100288755	0	genome.wustl.edu	37	21	9870469	9870469	+	RNA	SNP	A	G	G	rs77867706	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	9870469	9870469	A	G	SNP	LOC100288755	XR_078568	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.034	-	-	-		
LOC100290868	0	genome.wustl.edu	37	9	35681299	35681299	+	RNA	SNP	C	T	T	rs1538535	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35681299	35681299	C	T	SNP	LOC100290868	XR_079245	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.000	-	-	-		
LOC100291790	0	genome.wustl.edu	37	12	2312965	2312965	+	Missense_Mutation	SNP	G	A	A	rs4765902	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	2312965	2312965	G	A	SNP	LOC100291790	XM_002344668	human	genbank	57_37b	+1	model	missense	c.310	p.V104I	0.000	NULL	NULL	-		
LOC100291995	0	genome.wustl.edu	37	19	3110515	3110515	+	Missense_Mutation	SNP	A	A	G	rs172613	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3110515	3110515	A	G	SNP	LOC100291995	XM_002345231	human	genbank	57_37b	+1	model	missense	c.512	p.N171S	0.036	NULL	NULL	-		
LOC100292681	0	genome.wustl.edu	37	12	2208178	2208178	+	Missense_Mutation	SNP	A	G	G	rs2283279	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	2208178	2208178	A	G	SNP	LOC100292681	XM_002344671	human	genbank	57_37b	-1	model	missense	c.676	p.W226R	0.000	NULL	NULL	-		
LOC100294067	0	genome.wustl.edu	37	7	4166659	4166659	+	Silent	SNP	A	G	G	rs654384	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	4166659	4166659	A	G	SNP	LOC100294067	XM_002344286	human	genbank	57_37b	-1	model	silent	c.1809	p.N603	0.000	NULL	NULL	-		
LOC158376	158376	genome.wustl.edu	37	9	35910690	35910690	+	RNA	SNP	G	A	A	rs10491554	byCluster;byFrequency;by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35910690	35910690	G	A	SNP	LOC158376	NR_024283	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.029	-	-	-		
LOC388796	388796	genome.wustl.edu	37	20	37050817	37050817	+	RNA	SNP	T	T	C	rs3752278	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	37050817	37050817	T	C	SNP	LOC388796	NR_015366	human	genbank	57_37b	-1	predicted	rna	NULL	NULL	0.000	-	-	-		
LOC645359	645359	genome.wustl.edu	37	1	13219117	13219117	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	13219117	13219117	T	C	SNP	LOC645359	XM_928401	human	genbank	57_37b	-1	model	missense	c.509	p.E170G	0.000	superfamily_RNI-like	superfamily_RNI-like	-	no_errors	
LOC646214	646214	genome.wustl.edu	37	15	21940718	21940718	+	RNA	SNP	A	G	G	rs1533627	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	21940718	21940718	A	G	SNP	LOC646214	NR_027053	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.014	-	-	-		
LOC84931	84931	genome.wustl.edu	37	2	121222351	121222351	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	121222351	121222351	G	A	SNP	LOC84931	NR_027181	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors	
LOC92973	0	genome.wustl.edu	37	9	35861694	35861694	+	RNA	SNP	G	G	C	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35861694	35861694	G	C	SNP	LOC92973	NR_024006	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors	
LPA	4018	genome.wustl.edu	37	6	161015051	161015051	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	161015051	161015051	G	A	SNP	LPA	NM_005577	human	genbank	57_37b	-1	reviewed	nonsense	c.3568	p.Q1190*	0.402	superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle	superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
LPA	4018	genome.wustl.edu	37	6	161015051	161015051	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	161015051	161015051	G	A	SNP	LPA	NM_005577	human	genbank	57_37b	-1	reviewed	nonsense	c.3568	p.Q1190*	0.402	superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle	superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
MAGEC1	9947	genome.wustl.edu	37	X	140995480	140995480	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	140995480	140995480	C	G	SNP	MAGEC1	NM_005462	human	genbank	57_37b	+1	reviewed	missense	c.2290	p.Q764E	0.000	NULL	HMMPfam_MAGE	-	no_errors	
MELK	9833	genome.wustl.edu	37	9	36651752	36651752	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	36651752	36651752	G	A	SNP	MELK	NM_014791	human	genbank	57_37b	+1	provisional	missense	c.931	p.D311N	1.000	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_SSF103243,HMMPfam_KA1	-	no_errors	
MGC23284	0	genome.wustl.edu	37	16	88729788	88729788	+	RNA	SNP	C	T	T	rs3794628	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	88729788	88729788	C	T	SNP	MGC23284	NR_024399	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000	-	-	-		
MLL4	9757	genome.wustl.edu	37	19	36220104	36220104	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36220104	36220104	C	T	SNP	MLL4	NM_014727	human	genbank	57_37b	+1	reviewed	silent	c.4824	p.H1608	0.142	NULL	HMMPfam_AT_hook,HMMPfam_zf-CXXC,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors	
MUC12	10071	genome.wustl.edu	37	7	100661916	100661916	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100661916	100661916	G	A	SNP	MUC12	ENST00000379442	human	ensembl	57_37b	+1	known	silent	c.16436	p.*5479	0.002	NULL	PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_SEA,HMMSmart_SEA	-	no_errors	
ODF2	4957	genome.wustl.edu	37	9	131256860	131256860	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	131256860	131256860	G	A	SNP	ODF2	NM_002540	human	genbank	57_37b	+1	reviewed	silent	c.1752	p.A584	0.657	NULL	NULL	-	no_errors	
PASK	23178	genome.wustl.edu	37	2	242079007	242079007	+	Missense_Mutation	SNP	A	G	G	rs2074828	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	242079007	242079007	A	G	SNP	PASK	ENST00000433589	human	ensembl	57_37b	-1	known	missense	c.4	p.C2R	0.000	NULL	NULL	-		
PGAP2	27315	genome.wustl.edu	37	11	3819319	3819319	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	3819319	3819319	C	T	SNP	PGAP2	NR_027017	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors	
PLCG1	5335	genome.wustl.edu	37	20	39796490	39796490	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	39796490	39796490	A	G	SNP	PLCG1	NM_002660	human	genbank	57_37b	+1	reviewed	splice_site	c.2302-2	e20-2	1.000	-	-	-	no_errors	
RAD54L	8438	genome.wustl.edu	37	1	46738424	46738424	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	46738424	46738424	T	C	SNP	RAD54L	NM_001142548	human	genbank	57_37b	+1	reviewed	missense	c.1325	p.M442T	1.000	HMMPfam_SNF2_N,superfamily_SSF52540	HMMSmart_DEXDc,superfamily_SSF52540,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C	-	no_errors	
RASGRP2	10235	genome.wustl.edu	37	11	64497587	64497587	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64497587	64497587	C	T	SNP	RASGRP2	NM_001098670	human	genbank	57_37b	-1	reviewed	missense	c.1492	p.V498I	1.000	superfamily_Cysteine-rich domain	HMMSmart_SM00229,HMMPfam_RasGEF_N,superfamily_Ras GEF,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1	-	no_errors	
REV3L	5980	genome.wustl.edu	37	6	111697571	111697571	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	111697571	111697571	C	T	SNP	REV3L	NM_002912	human	genbank	57_37b	-1	validated	missense	c.1987	p.E663K	1.000	superfamily_Ribonuclease H-like	superfamily_Ribonuclease H-like,HMMSmart_SM00486,HMMPfam_DNA_pol_B_exo,superfamily_DNA/RNA polymerases,HMMPfam_DNA_pol_B,PatternScan_DNA_POLYMERASE_B	-	no_errors	
SCNN1B	6338	genome.wustl.edu	37	16	23366809	23366809	+	Missense_Mutation	SNP	C	C	T	rs72654326	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	23366809	23366809	C	T	SNP	SCNN1B	NM_000336	human	genbank	57_37b	+1	reviewed	missense	c.775	p.R259W	1.000	HMMPfam_ASC	HMMPfam_ASC,PatternScan_ASC	-		
SEC24C	9632	genome.wustl.edu	37	10	75527697	75527697	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	75527697	75527697	G	A	SNP	SEC24C	NM_004922	human	genbank	57_37b	+1	reviewed	missense	c.2113	p.D705N	1.000	superfamily_beta-sandwich domain of Sec23/24,HMMPfam_Sec23_trunk,superfamily_vWA-like	superfamily_beta-sandwich domain of Sec23/24,superfamily_Zn-finger domain of Sec23/24,HMMPfam_zf-Sec23_Sec24,HMMPfam_Sec23_trunk,superfamily_vWA-like,HMMPfam_Sec23_BS,superfamily_Helical domain of Sec23/24,HMMPfam_Sec23_helical,superfamily_C-terminal gelsolin-like domain of Sec23/24,HMMPfam_Gelsolin,PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors	
SGSM1	129049	genome.wustl.edu	37	22	25209724	25209724	+	Splice_Site	SNP	T	C	C	rs5996763	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	25209724	25209724	T	C	SNP	SGSM1	ENST00000470591	human	ensembl	57_37b	+1	known	splice_site	c.NULL	NULL	0.000	-	-	-		
SLC25A18	83733	genome.wustl.edu	37	22	18065387	18065387	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	18065387	18065387	C	T	SNP	SLC25A18	NM_031481	human	genbank	57_37b	+1	provisional	silent	c.258	p.N86	0.993	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors	
STAU1	6780	genome.wustl.edu	37	20	47736592	47736592	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	47736592	47736592	T	G	SNP	STAU1	NM_017453	human	genbank	57_37b	-1	reviewed	missense	c.1040	p.N347T	1.000	superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358	superfamily_dsRNA-binding domain-like,HMMSmart_SM00358,HMMPfam_dsrm	-	no_errors	
TBCD	6904	genome.wustl.edu	37	17	80878479	80878479	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	80878479	80878479	G	A	SNP	TBCD	NM_005993	human	genbank	57_37b	+1	reviewed	missense	c.2086	p.G696S	0.984	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
TMCO6	55374	genome.wustl.edu	37	5	140023514	140023514	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140023514	140023514	G	A	SNP	TMCO6	NM_018502	human	genbank	57_37b	+1	provisional	silent	c.1068	p.L356	0.983	superfamily_ARM repeat,HMMSmart_SM00185	superfamily_ARM repeat,HMMSmart_SM00185	-	no_errors	
TWSG1	57045	genome.wustl.edu	37	18	9396368	9396368	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	9396368	9396368	G	A	SNP	TWSG1	NM_020648	human	genbank	57_37b	+1	validated	missense	c.314	p.R105Q	1.000	HMMPfam_Tsg	HMMPfam_Tsg	-	no_errors	
UBR3	130507	genome.wustl.edu	37	2	170897490	170897490	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	170897490	170897490	G	A	SNP	UBR3	NM_172070	human	genbank	57_37b	+1	validated	missense	c.4655	p.R1552H	0.956	NULL	HMMPfam_zf-UBR,HMMSmart_SM00396,superfamily_RING/U-box,HMMPfam_zf-C3HC4	-	no_errors	
ZNF577	84765	genome.wustl.edu	37	19	52383938	52383938	+	RNA	SNP	C	T	T	rs8113768	byCluster;byFrequency;by1000genomes	TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52383938	52383938	C	T	SNP	ZNF577	NR_024181	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.080	-	-	-		
