Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ATP2C2	9914	genome.wustl.edu	37	16	84497267	84497267	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	84497267	84497267	G	A	SNP	ATP2C2	NM_014861	human	genbank	57_37b	+1	validated	missense	c.2770	p.E924K	0.999	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_Cation_ATPase_C	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_Cation_ATPase_N,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors	
CCDC11	220136	genome.wustl.edu	37	18	47777321	47777321	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	47777321	47777321	T	C	SNP	CCDC11	NM_145020	human	genbank	57_37b	-1	validated	missense	c.803	p.H268R	0.896	NULL	NULL	-	no_errors	
CLRN2	645104	genome.wustl.edu	37	4	17517100	17517100	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	17517100	17517100	G	A	SNP	CLRN2	NM_001079827	human	genbank	57_37b	+1	reviewed	missense	c.211	p.V71M	1.000	NULL	NULL	-	no_errors	
CTBP2	1488	genome.wustl.edu	37	10	126714762	126714762	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	126714762	126714762	T	G	SNP	CTBP2	NM_022802	human	genbank	57_37b	-1	reviewed	missense	c.1567	p.T523P	0.000	NULL	superfamily_SSF52283,HMMPfam_2-Hacid_dh,superfamily_NAD(P)-bd,HMMPfam_2-Hacid_dh_C,PatternScan_D_2_HYDROXYACID_DH_3	-	no_errors	
DCLK1	9201	genome.wustl.edu	37	13	36700119	36700119	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	36700119	36700119	G	A	SNP	DCLK1	NM_004734	human	genbank	57_37b	-1	validated	silent	c.156	p.S52	0.889	superfamily_SSF89837,HMMSmart_DCX	superfamily_SSF89837,HMMSmart_DCX,HMMPfam_DCX,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
EBF2	64641	genome.wustl.edu	37	8	25897605	25897605	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	25897605	25897605	C	T	SNP	EBF2	NM_022659	human	genbank	57_37b	-1	validated	missense	c.421	p.E141K	1.000	NULL	PatternScan_COE,HMMSmart_IPT,superfamily_Ig_E-set,HMMPfam_TIG,HMMSmart_HLH	-	no_errors	
EXOC3	11336	genome.wustl.edu	37	5	453697	453697	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-11A-12W-A100-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	453697	453697	A	G	SNP	EXOC3	NM_007277	human	genbank	57_37b	+1	reviewed	missense	c.577	p.M193V	1.000	HMMPfam_Sec6	HMMPfam_Sec6	-	no_errors	
FLG	2312	genome.wustl.edu	37	1	152282524	152282524	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152282524	152282524	G	A	SNP	FLG	NM_002016	human	genbank	57_37b	-1	reviewed	missense	c.4838	p.S1613L	0.001	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin	-	no_errors	
GPR182	11318	genome.wustl.edu	37	12	57389644	57389644	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57389644	57389644	G	A	SNP	GPR182	NM_007264	human	genbank	57_37b	+1	reviewed	silent	c.651	p.A217	0.002	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
GRN	2896	genome.wustl.edu	37	17	42427851	42427851	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42427851	42427851	T	G	SNP	GRN	NM_002087	human	genbank	57_37b	+1	reviewed	silent	c.504	p.G168	0.001	HMMSmart_SM00277,HMMPfam_Granulin,PatternScan_GRANULINS	superfamily_Granulin repeat,HMMSmart_SM00277,HMMPfam_Granulin,PatternScan_GRANULINS,PatternScan_PA2_HIS	-	no_errors	
HPCAL1	3241	genome.wustl.edu	37	2	10559956	10559956	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	10559956	10559956	C	T	SNP	HPCAL1	NM_002149	human	genbank	57_37b	+1	reviewed	missense	c.73	p.H25Y	1.000	superfamily_EF-hand	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors	
ITGB5	3693	genome.wustl.edu	37	3	124540269	124540269	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	124540269	124540269	T	C	SNP	ITGB5	NM_002213	human	genbank	57_37b	-1	provisional	missense	c.833	p.D278G	0.986	HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300,HMMSmart_VWA	HMMSmart_PSI,HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300,HMMSmart_VWA,superfamily_SSF69179,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_INTEGRIN_BETA,superfamily_SSF57196,HMMSmart_EGF,superfamily_Integrin_bsu_tail,HMMPfam_Integrin_B_tail,HMMPfam_Integrin_b_cyt	-	no_errors	
KY	339855	genome.wustl.edu	37	3	134327375	134327376	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	134327375	134327376	-	T	INS	KY	ENST00000383222	human	ensembl	57_37b	-1	known	frame_shift_ins	c.981_980	p.V328fs	0.184:0.174	NULL	superfamily_SSF54001,HMMPfam_Transglut_core,HMMSmart_TGc	-	no_errors	
LOC100132364	0	genome.wustl.edu	37	16	69776213	69776240	+	Frame_Shift_Del	DEL	TTTGCCTGCGGGAACTCGCTCTTCACCT	TTTGCCTGCGGGAACTCGCTCTTCACCT	-	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	TTTGCCTGCGGGAACTCGCTCTTCACCT	TTTGCCTGCGGGAACTCGCTCTTCACCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	69776213	69776240	TTTGCCTGCGGGAACTCGCTCTTCACCT	-	DEL	LOC100132364	XM_001726681	human	genbank	57_37b	+1	model	frame_shift_del	c.305_332	p.C103fs	0.000:0.000:0.000:0.001:0.000:0.001:0.000:0.000:0.000:0.000:0.001:0.004:0.002:0.000:0.001:0.001:0.000:0.000:0.000:0.000:0.001:0.027:0.989:0.996:1.000:1.000:1.000:1.000	NULL	NULL	(deletion:cds_exon[69775909,69776379])	no_errors	
LOC100132364	0	genome.wustl.edu	37	16	69776213	69776240	+	Frame_Shift_Del	DEL	TTTGCCTGCGGGAACTCGCTCTTCACCT	TTTGCCTGCGGGAACTCGCTCTTCACCT	-	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-11A-12W-A100-09	TTTGCCTGCGGGAACTCGCTCTTCACCT	TTTGCCTGCGGGAACTCGCTCTTCACCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	69776213	69776240	TTTGCCTGCGGGAACTCGCTCTTCACCT	-	DEL	LOC100132364	XM_001726681	human	genbank	57_37b	+1	model	frame_shift_del	c.305_332	p.C103fs	0.000:0.000:0.000:0.001:0.000:0.001:0.000:0.000:0.000:0.000:0.001:0.004:0.002:0.000:0.001:0.001:0.000:0.000:0.000:0.000:0.001:0.027:0.989:0.996:1.000:1.000:1.000:1.000	NULL	NULL	(deletion:cds_exon[69775909,69776379])	no_errors	
LOC100289847	0	genome.wustl.edu	37	9	34923050	34923050	+	Missense_Mutation	SNP	T	T	G	rs117117203	by1000genomes	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-11A-12W-A100-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	34923050	34923050	T	G	SNP	LOC100289847	XM_002347046	human	genbank	57_37b	+1	model	missense	c.175	p.F59V	0.000	NULL	NULL	-		
LST-3TM12	338821	genome.wustl.edu	37	12	21168658	21168658	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	21168658	21168658	G	A	SNP	LST-3TM12	NM_001009562	human	genbank	57_37b	+1	validated	missense	c.29	p.R10K	1.000	HMMPfam_OATP,superfamily_MFS general substrate transporter	HMMPfam_OATP,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2	-	no_errors	
MAP2K4	6416	genome.wustl.edu	37	17	12011144	12011144	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	12011144	12011144	C	T	SNP	MAP2K4	NM_003010	human	genbank	57_37b	+1	reviewed	missense	c.551	p.S184L	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MTMR15	22909	genome.wustl.edu	37	15	31197787	31197788	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	31197787	31197788	TG	-	DEL	MTMR15	NM_014967	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.921_922	p.V308fs	0.000:0.000	NULL	HMMSmart_SM00734,HMMPfam_VRR_NUC	(deletion:cds_exon[31196867,31198100])	no_errors	
MTMR15	22909	genome.wustl.edu	37	15	31197787	31197788	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-11A-12W-A100-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	31197787	31197788	TG	-	DEL	MTMR15	NM_014967	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.921_922	p.V308fs	0.000:0.000	NULL	HMMSmart_SM00734,HMMPfam_VRR_NUC	(deletion:cds_exon[31196867,31198100])	no_errors	
NINL	22981	genome.wustl.edu	37	20	25459629	25459629	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	25459629	25459629	G	C	SNP	NINL	NM_025176	human	genbank	57_37b	-1	validated	missense	c.2131	p.L711V	0.000	NULL	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors	
NPY1R	4886	genome.wustl.edu	37	4	164247685	164247685	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	164247685	164247685	G	A	SNP	NPY1R	NM_000909	human	genbank	57_37b	-1	validated	nonsense	c.22	p.Q8*	0.000	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
NPY1R	4886	genome.wustl.edu	37	4	164247685	164247685	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-11A-12W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	164247685	164247685	G	A	SNP	NPY1R	NM_000909	human	genbank	57_37b	-1	validated	nonsense	c.22	p.Q8*	0.000	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
NUP160	23279	genome.wustl.edu	37	11	47814420	47814420	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47814420	47814420	T	C	SNP	NUP160	NM_015231	human	genbank	57_37b	-1	validated	missense	c.3368	p.N1123S	1.000	NULL	PatternScan_HIS_ACID_PHOSPHAT_1	-	no_errors	
OBSCN	84033	genome.wustl.edu	37	1	228496014	228496014	+	Silent	SNP	G	G	A	rs876180	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-11A-12W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228496014	228496014	G	A	SNP	OBSCN	NM_001098623	human	genbank	57_37b	+1	reviewed	silent	c.12669	p.T4223	0.000	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-		
PCDHB12	56124	genome.wustl.edu	37	5	140590267	140590267	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140590267	140590267	G	A	SNP	PCDHB12	NM_018932	human	genbank	57_37b	+1	reviewed	silent	c.1788	p.S596	0.988	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1624	p.E542K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PIK3R4	30849	genome.wustl.edu	37	3	130452677	130452677	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	130452677	130452677	G	C	SNP	PIK3R4	NM_014602	human	genbank	57_37b	-1	validated	missense	c.1165	p.L389V	1.000	superfamily_ARM-type_fold	PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,PatternScan_PROTEIN_KINASE_ST,superfamily_ARM-type_fold,HMMPfam_HEAT,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
PRPF19	27339	genome.wustl.edu	37	11	60666746	60666746	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-11A-12W-A100-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	60666746	60666746	T	G	SNP	PRPF19	NM_014502	human	genbank	57_37b	-1	validated	missense	c.859	p.T287P	1.000	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	HMMSmart_Ubox,superfamily_SSF57850,HMMPfam_U-box,HMMPfam_Prp19,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
RNGTT	8732	genome.wustl.edu	37	6	89600290	89600290	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	89600290	89600290	C	T	SNP	RNGTT	NM_003800	human	genbank	57_37b	-1	validated	missense	c.820	p.V274I	1.000	superfamily_DNA ligase/mRNA capping enzyme catalytic domain,HMMPfam_mRNA_cap_enzyme	superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,PatternScan_TYR_PHOSPHATASE_1,superfamily_DNA ligase/mRNA capping enzyme catalytic domain,HMMPfam_mRNA_cap_enzyme,HMMPfam_mRNA_cap_C,superfamily_Nucleic acid-binding proteins	-	no_errors	
RPSA	3921	genome.wustl.edu	37	3	39452384	39452384	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	39452384	39452384	A	C	SNP	RPSA	NM_001012321	human	genbank	57_37b	+1	reviewed	missense	c.392	p.H131P	1.000	superfamily_Ribosomal_S2,HMMPfam_Ribosomal_S2,PatternScan_RIBOSOMAL_S2_2	superfamily_Ribosomal_S2,PatternScan_RIBOSOMAL_S2_1,HMMPfam_Ribosomal_S2,PatternScan_RIBOSOMAL_S2_2	-	no_errors	
SGSM1	129049	genome.wustl.edu	37	22	25308612	25308612	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	25308612	25308612	G	T	SNP	SGSM1	NM_001039948	human	genbank	57_37b	+1	validated	missense	c.2986	p.A996S	1.000	superfamily_Ypt/Rab-GAP domain of gyp1p,HMMSmart_SM00164,HMMPfam_TBC	HMMPfam_RUN,HMMSmart_SM00593,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMSmart_SM00164,HMMPfam_TBC	-	no_errors	
TRIM21	6737	genome.wustl.edu	37	11	4409560	4409560	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4409560	4409560	C	T	SNP	TRIM21	NM_003141	human	genbank	57_37b	-1	reviewed	silent	c.705	p.R235	0.444	NULL	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors	
