Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
BMPR1B	658	genome.wustl.edu	37	4	96045009	96045012	+	Frame_Shift_Del	DEL	CTGT	CTGT	-	novel	unknown	TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	CTGT	CTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	96045009	96045012	CTGT	-	DEL	BMPR1B	NM_001203	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.398_401	p.C135fs	0.999:0.839:1.000:1.000	NULL	HMMPfam_Activin_recp,superfamily_Snake toxin-like,HMMPfam_TGF_beta_GS,HMMSmart_SM00467,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[96044961,96045057])	no_errors	
CACNA1C	775	genome.wustl.edu	37	12	2800326	2800326	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	2800326	2800326	G	A	SNP	CACNA1C	NM_199460	human	genbank	57_37b	+1	reviewed	silent	c.6627	p.E2209	1.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors	
CBFB	865	genome.wustl.edu	37	16	67063313	67063313	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67063313	67063313	G	A	SNP	CBFB	NM_022845	human	genbank	57_37b	+1	reviewed	missense	c.3	p.M1I	1.000	HMMPfam_CBF_beta	HMMPfam_CBF_beta,superfamily_CBF_beta	-	no_errors	
DNAH6	0	genome.wustl.edu	37	2	84784910	84784910	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	84784910	84784910	C	T	SNP	DNAH6	NM_001370	human	genbank	57_37b	+1	validated	missense	c.1654	p.P552S	0.998	NULL	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
EGFR	1956	genome.wustl.edu	37	7	55266456	55266456	+	Silent	SNP	C	C	T	rs41396448	unknown	TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	55266456	55266456	C	T	SNP	EGFR	NM_005228	human	genbank	57_37b	+1	reviewed	silent	c.2748	p.D916	0.187	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_L domain-like,HMMPfam_Recep_L_domain,HMMPfam_Furin-like,superfamily_Growth factor receptor domain,HMMSmart_SM00261,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-		
GATA3	2625	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-	novel	unknown	TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8111433	8111434	CA	-	DEL	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	(deletion:intron[8106102,8111435])	no_errors	
LOC100287102	0	genome.wustl.edu	37	1	13417	13418	+	Frame_Shift_Ins	INS	-	-	GAGA	novel	unknown	TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	13417	13418	-	GAGA	INS	LOC100287102	XM_002342010	human	genbank	57_37b	+1	model	frame_shift_ins	c.180_181	p.I61fs	0.003:0.002	NULL	NULL	-	rna_with_coding_region	
LOC388692	388692	genome.wustl.edu	37	1	149283072	149283072	+	RNA	SNP	G	G	A	rs61804868	unknown	TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	149283072	149283072	G	A	SNP	LOC388692	NR_027002	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.112	-	-	-		
MAP3K1	4214	genome.wustl.edu	37	5	56160697	56160700	+	Frame_Shift_Del	DEL	CTAA	CTAA	-	novel	unknown	TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	CTAA	CTAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56160697	56160700	CTAA	-	DEL	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	frame_shift_del	c.971_974	p.N325fs	1.000:1.000:1.000:1.000	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[56160561,56160761])	no_errors	
MAP3K1	4214	genome.wustl.edu	37	5	56161690	56161691	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56161690	56161691	-	T	INS	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	frame_shift_ins	c.1187_1188	p.S397fs	1.000:1.000	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors	
MTA3	57504	genome.wustl.edu	37	2	42909567	42909567	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	42909567	42909567	A	C	SNP	MTA3	NM_020744	human	genbank	57_37b	+1	provisional	missense	c.729	p.R243S	0.960	NULL	HMMPfam_BAH,HMMSmart_BAH,HMMPfam_ELM2,HMMSmart_SANT,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain_like,HMMSmart_ZnF_GATA,HMMPfam_GATA	-	no_errors	
NOL10	79954	genome.wustl.edu	37	2	10729809	10729809	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	10729809	10729809	A	T	SNP	NOL10	NM_024894	human	genbank	57_37b	-1	validated	missense	c.1491	p.D497E	0.982	HMMPfam_NUC153	superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase,HMMSmart_SM00320,HMMPfam_NUC153	-	no_errors	
NUP155	9631	genome.wustl.edu	37	5	37314414	37314414	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	37314414	37314414	T	G	SNP	NUP155	NM_153485	human	genbank	57_37b	-1	reviewed	missense	c.2322	p.E774D	1.000	HMMPfam_Nucleoporin	HMMPfam_Nucleoporin	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	unknown	TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1633	p.E545K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-		
RNF180	285671	genome.wustl.edu	37	5	63510190	63510190	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	63510190	63510190	C	T	SNP	RNF180	NM_001113561	human	genbank	57_37b	+1	validated	missense	c.1037	p.S346L	0.003	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors	
RPAP3	79657	genome.wustl.edu	37	12	48091472	48091472	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0DT-01A-21D-A12B-09	TCGA-BH-A0DT-11A-12D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	48091472	48091472	C	A	SNP	RPAP3	NM_024604	human	genbank	57_37b	-1	reviewed	missense	c.325	p.D109Y	0.981	NULL	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	-	no_errors	
