Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACACB	32	genome.wustl.edu	37	12	109617027	109617027	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	109617027	109617027	G	T	SNP	ACACB	NM_001093	human	genbank	57_37b	+1	reviewed	missense	c.1572	p.Q524H	1.000	superfamily_Glutathione synthetase ATP-binding domain-like,HMMPfam_CPSase_L_D2	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp domain,superfamily_Glutathione synthetase ATP-binding domain-like,HMMPfam_CPSase_L_D2,PatternScan_CPSASE_1,PatternScan_CPSASE_2,superfamily_Rudiment single hybrid motif,HMMPfam_Biotin_carb_C,superfamily_Single hybrid motif,HMMPfam_Biotin_lipoyl,HMMPfam_ACC_central,superfamily_ClpP/crotonase,HMMPfam_Carboxyl_trans	-	no_errors	
ANKLE1	126549	genome.wustl.edu	37	19	17392894	17392894	+	Missense_Mutation	SNP	G	G	A	rs8100241	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17392894	17392894	G	A	SNP	ANKLE1	NM_152363	human	genbank	57_37b	+1	validated	missense	c.91	p.A31T	0.155	superfamily_Ankyrin repeat,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,HMMPfam_LEM	-		
CAMTA2	23125	genome.wustl.edu	37	17	4883016	4883016	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4883016	4883016	G	C	SNP	CAMTA2	NM_015099	human	genbank	57_37b	-1	validated	missense	c.1601	p.T534S	0.266	superfamily_E set domains,HMMPfam_TIG	HMMPfam_CG-1,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Ank,superfamily_Ankyrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_IQ	-	no_errors	
CDH1	999	genome.wustl.edu	37	16	68862178	68862179	+	Frame_Shift_Ins	INS	-	-	AT	novel	unknown	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68862178	68862179	-	AT	INS	CDH1	NM_004360	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.2266_2267	p.E757fs	1.000:1.000	HMMPfam_Cadherin_C	superfamily_Cadherin-like,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors	
CNBD1	168975	genome.wustl.edu	37	8	88365988	88365988	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	88365988	88365988	C	T	SNP	CNBD1	NM_173538	human	genbank	57_37b	+1	provisional	missense	c.1277	p.A426V	0.872	superfamily_cNMP_binding,HMMPfam_cNMP_binding	PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,HMMPfam_cNMP_binding	-	no_errors	
ESPL1	9700	genome.wustl.edu	37	12	53663662	53663662	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53663662	53663662	C	A	SNP	ESPL1	NM_012291	human	genbank	57_37b	+1	validated	silent	c.936	p.A312	0.012	NULL	HMMPfam_Peptidase_C50	-	no_errors	
INTS4	92105	genome.wustl.edu	37	11	77702264	77702265	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	77702264	77702265	-	T	INS	INTS4	NM_033547	human	genbank	57_37b	-1	validated	frame_shift_ins	c.136_135	p.A45fs	1.000:0.998	NULL	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
KLHL6	89857	genome.wustl.edu	37	3	183209733	183209733	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	183209733	183209733	G	A	SNP	KLHL6	NM_130446	human	genbank	57_37b	-1	validated	silent	c.1848	p.P616	0.005	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch	-	no_errors	
LMO4	8543	genome.wustl.edu	37	1	87805767	87805767	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	87805767	87805767	C	T	SNP	LMO4	NM_006769	human	genbank	57_37b	+1	reviewed	missense	c.371	p.P124L	1.000	HMMSmart_SM00132,HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors	
LOC100131360	0	genome.wustl.edu	37	3	195723586	195723586	+	RNA	SNP	G	G	A	rs56022806	byCluster	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	195723586	195723586	G	A	SNP	LOC100131360	XR_037733	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.967	-	-	-		
MCART6	401612	genome.wustl.edu	37	X	103349492	103349492	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	103349492	103349492	C	T	SNP	MCART6	NM_001012755	human	genbank	57_37b	-1	validated	missense	c.449	p.R150H	1.000	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors	
OBSCN	84033	genome.wustl.edu	37	1	228399766	228399766	+	Silent	SNP	T	T	C	rs55971985	byCluster;by1000genomes	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228399766	228399766	T	C	SNP	OBSCN	NM_001098623	human	genbank	57_37b	+1	reviewed	silent	c.282	p.A94	0.022	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-		
PCDHB3	56132	genome.wustl.edu	37	5	140482342	140482342	+	Silent	SNP	T	T	C	rs17844403	byCluster	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140482342	140482342	T	C	SNP	PCDHB3	NM_018937	human	genbank	57_37b	+1	reviewed	silent	c.2109	p.F703	0.000	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-		
PTEN	5728	genome.wustl.edu	37	10	89685316	89685316	+	Splice_Site	DEL	T	T	-	novel	unknown	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	89685316	89685316	T	-	DEL	PTEN	ENST00000371953	human	ensembl	57_37b	+1	known	splice_site_del	c.209+2	e3+2	1.000	-	-	(deletion:intron[89685315,89690802])	no_errors	
RBM5	10181	genome.wustl.edu	37	3	50151449	50151449	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	50151449	50151449	T	-	DEL	RBM5	NM_005778	human	genbank	57_37b	+1	provisional	frame_shift_del	c.1684	p.Q563fs	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,HMMSmart_SM00443,HMMPfam_G-patch	(deletion:cds_exon[50151383,50151532])	no_errors	
TTLL3	26140	genome.wustl.edu	37	3	9871030	9871030	+	Missense_Mutation	SNP	T	T	G	rs2290305	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	9871030	9871030	T	G	SNP	TTLL3	NM_001025930	human	genbank	57_37b	+1	provisional	missense	c.1505	p.M502R	0.425	HMMPfam_TTL	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	-		
ZNF469	84627	genome.wustl.edu	37	16	88502482	88502482	+	Silent	SNP	C	C	T	rs3812953	byCluster;by1000genomes	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	88502482	88502482	C	T	SNP	ZNF469	NM_001127464	human	genbank	57_37b	+1	reviewed	silent	c.8520	p.R2840	0.149	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-		
