Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCC6	368	genome.wustl.edu	37	16	16315544	16315544	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	16315544	16315544	C	A	SNP	ABCC6	NM_001171	human	genbank	57_37b	-1	reviewed	missense	c.181	p.G61C	0.509	NULL	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ANK1	286	genome.wustl.edu	37	8	41591581	41591581	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	41591581	41591581	A	T	SNP	ANK1	NM_001142446	human	genbank	57_37b	-1	reviewed	missense	c.235	p.L79M	0.979	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,HMMSmart_ZU5,HMMSmart_DEATH,superfamily_DEATH_like,HMMPfam_Death	-	no_errors	
ATP2A1	487	genome.wustl.edu	37	16	28909329	28909329	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	28909329	28909329	C	A	SNP	ATP2A1	NM_173201	human	genbank	57_37b	+1	reviewed	silent	c.1428	p.R476	1.000	superfamily_Calcium ATPase transmembrane domain M,superfamily_Metal cation-transporting ATPase ATP-binding domain N	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_Cation_ATPase_N,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Hydrolase,superfamily_HAD-like,HMMPfam_Cation_ATPase_C	-	no_errors	
C10orf79	80217	genome.wustl.edu	37	10	105922136	105922136	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	105922136	105922136	G	A	SNP	C10orf79	NM_025145	human	genbank	57_37b	-1	provisional	missense	c.3272	p.P1091L	0.004	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like	-	no_errors	
C6orf141	135398	genome.wustl.edu	37	6	49519103	49519103	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	49519103	49519103	G	C	SNP	C6orf141	NM_001145652	human	genbank	57_37b	+1	validated	missense	c.598	p.E200Q	0.005	NULL	NULL	-	no_errors	
C8orf4	56892	genome.wustl.edu	37	8	40011156	40011156	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	40011156	40011156	C	T	SNP	C8orf4	NM_020130	human	genbank	57_37b	+1	reviewed	silent	c.105	p.A35	0.001	NULL	NULL	-	no_errors	
CHRNB2	1141	genome.wustl.edu	37	1	154544053	154544054	+	Frame_Shift_Ins	INS	-	-	CCATC	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	154544053	154544054	-	CCATC	INS	CHRNB2	NM_000748	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.754_755	p.L254fs	1.000:1.000	superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	-	no_errors	
CNTN4	152330	genome.wustl.edu	37	3	3085276	3085276	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	3085276	3085276	C	T	SNP	CNTN4	NM_175607	human	genbank	57_37b	+1	reviewed	missense	c.2699	p.P900L	1.000	superfamily_Fibronectin type III	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
DNAH10	196385	genome.wustl.edu	37	12	124387592	124387592	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	124387592	124387592	C	T	SNP	DNAH10	NM_207437	human	genbank	57_37b	+1	validated	silent	c.9393	p.V3131	1.000	NULL	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
DOCK6	57572	genome.wustl.edu	37	19	11311605	11311605	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11311605	11311605	C	T	SNP	DOCK6	NM_020812	human	genbank	57_37b	-1	validated	missense	c.5812	p.V1938I	1.000	HMMPfam_Ded_cyto	HMMPfam_Ded_cyto	-	no_errors	
ENSG00000238283	0	genome.wustl.edu	37	17	58092166	58092166	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	58092166	58092166	C	T	SNP	ENSG00000238283	ENST00000407042	human	ensembl	57_37b	-1	known	missense	c.322	p.G108S	1.000	superfamily_RabGAP_TBC,HMMPfam_TBC	superfamily_RabGAP_TBC,HMMPfam_TBC	-	no_errors	
ENSG00000245239	0	genome.wustl.edu	37	10	11963139	11963139	+	RNA	SNP	T	T	G	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	11963139	11963139	T	G	SNP	ENSG00000245239	ENST00000499091	human	ensembl	57_37b	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	
FAM123B	139285	genome.wustl.edu	37	X	63412178	63412178	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	63412178	63412178	T	G	SNP	FAM123B	NM_152424	human	genbank	57_37b	-1	validated	missense	c.989	p.D330A	1.000	HMMPfam_WTX	HMMPfam_WTX	-	no_errors	
FSTL4	23105	genome.wustl.edu	37	5	132535364	132535364	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	132535364	132535364	T	G	SNP	FSTL4	NM_015082	human	genbank	57_37b	-1	validated	missense	c.1952	p.H651P	1.000	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	superfamily_Kazal-type serine protease inhibitors,HMMSmart_SM00280,HMMPfam_Kazal_1,superfamily_EF-hand,PatternScan_EF_HAND_1,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	-	no_errors	
GCLM	2730	genome.wustl.edu	37	1	94354623	94354623	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	94354623	94354623	A	C	SNP	GCLM	NM_002061	human	genbank	57_37b	-1	reviewed	missense	c.748	p.Y250D	0.997	superfamily_NAD(P)-linked oxidoreductase	superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red	-	no_errors	
GHRL	51738	genome.wustl.edu	37	3	10331484	10331484	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	10331484	10331484	C	T	SNP	GHRL	NM_016362	human	genbank	57_37b	-1	reviewed	missense	c.187	p.G63S	0.000	HMMPfam_Motilin_assoc	HMMPfam_Motilin_ghrelin,HMMPfam_Motilin_assoc	-	no_errors	
IL1RL2	8808	genome.wustl.edu	37	2	102804317	102804317	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	102804317	102804317	C	G	SNP	IL1RL2	ENST00000441515	human	ensembl	57_37b	+1	known	missense	c.70	p.P24A	0.057	NULL	superfamily_SSF48726,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR	-	no_errors	
IMPG1	3617	genome.wustl.edu	37	6	76751758	76751758	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	76751758	76751758	C	T	SNP	IMPG1	NM_001563	human	genbank	57_37b	-1	provisional	missense	c.153	p.M51I	0.001	NULL	superfamily_SSF82671,HMMPfam_SEA,HMMSmart_SEA	-	no_errors	
LAMA5	3911	genome.wustl.edu	37	20	60913127	60913127	+	Silent	SNP	A	G	G	rs8124907	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60913127	60913127	A	G	SNP	LAMA5	NM_005560	human	genbank	57_37b	-1	reviewed	silent	c.1836	p.A612	0.001	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_LAM_1	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_TNFR_NGFR_1,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-		
MEGF8	1954	genome.wustl.edu	37	19	42840407	42840407	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42840407	42840407	C	T	SNP	MEGF8	NM_001410	human	genbank	57_37b	+1	validated	missense	c.1153	p.R385W	0.999	superfamily_Gal_oxid_central	superfamily_CUB,HMMSmart_CUB,HMMPfam_CUB,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_PSI,PatternScan_C_TYPE_LECTIN_1,HMMPfam_PSI,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,superfamily_SSF57196,PatternScan_ASX_HYDROXYL,HMMPfam_Laminin_EGF,PatternScan_EGF_LAM_1,HMMSmart_EGF_Lam	-	no_errors	
MIR1204	0	genome.wustl.edu	37	8	128808257	128808257	+	RNA	SNP	G	G	C	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	128808257	128808257	G	C	SNP	MIR1204	ENST00000408388	human	ensembl	57_37b	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	
MLLT4	4301	genome.wustl.edu	37	6	168312082	168312082	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	168312082	168312082	C	G	SNP	MLLT4	NM_001040001	human	genbank	57_37b	+1	validated	nonsense	c.1947	p.Y649*	1.000	NULL	HMMPfam_RA,HMMSmart_RA,superfamily_SSF54236,superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA,HMMPfam_DIL,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ	-	no_errors	
MOSPD2	158747	genome.wustl.edu	37	X	14910870	14910870	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	14910870	14910870	T	A	SNP	MOSPD2	NM_152581	human	genbank	57_37b	+1	provisional	silent	c.105	p.R35	1.000	superfamily_CRAL/TRIO N-terminal domain	superfamily_CRAL/TRIO N-terminal domain,superfamily_CRAL/TRIO domain,HMMSmart_SM00516,HMMPfam_CRAL_TRIO,HMMPfam_Motile_Sperm,superfamily_PapD-like	-	no_errors	
MYO9B	4650	genome.wustl.edu	37	19	17313112	17313112	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17313112	17313112	G	T	SNP	MYO9B	NM_004145	human	genbank	57_37b	+1	reviewed	missense	c.4836	p.K1612N	1.000	superfamily_SSF57889	HMMPfam_RA,HMMSmart_RA,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	no_errors	
NTRK1	4914	genome.wustl.edu	37	1	156843599	156843599	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156843599	156843599	G	A	SNP	NTRK1	NM_002529	human	genbank	57_37b	+1	reviewed	missense	c.1025	p.R342Q	0.019	superfamily_Immunoglobulin	superfamily_L domain-like,HMMSmart_SM00082,superfamily_Immunoglobulin,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	-	no_errors	
NUP214	8021	genome.wustl.edu	37	9	134003062	134003062	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	134003062	134003062	A	G	SNP	NUP214	NM_005085	human	genbank	57_37b	+1	reviewed	missense	c.197	p.N66S	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320	-	no_errors	
PAPPA	5069	genome.wustl.edu	37	9	118950059	118950059	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	118950059	118950059	C	T	SNP	PAPPA	NM_002581	human	genbank	57_37b	+1	reviewed	missense	c.1042	p.R348C	1.000	superfamily_SSF55486	superfamily_ConA_like_lec_gl,HMMSmart_LamGL,superfamily_SSF55486,HMMPfam_Notch,HMMSmart_NL,PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M43,superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	-	no_errors	
PDE11A	50940	genome.wustl.edu	37	2	178565928	178565928	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	178565928	178565928	G	A	SNP	PDE11A	NM_016953	human	genbank	57_37b	-1	reviewed	missense	c.2165	p.A722V	1.000	superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I	superfamily_GAF domain-like,HMMPfam_GAF,HMMSmart_SM00065,superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors	
PHKA2	5256	genome.wustl.edu	37	X	18943843	18943843	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	18943843	18943843	G	T	SNP	PHKA2	NM_000292	human	genbank	57_37b	-1	reviewed	silent	c.1512	p.V504	0.914	HMMPfam_PHK_AB	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases	-	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PRDM8	56978	genome.wustl.edu	37	4	81124648	81124648	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	81124648	81124648	C	G	SNP	PRDM8	NM_001099403	human	genbank	57_37b	+1	validated	missense	c.2032	p.R678G	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_TUBULIN,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors	
PRND	23627	genome.wustl.edu	37	20	4705538	4705538	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	4705538	4705538	C	T	SNP	PRND	NM_012409	human	genbank	57_37b	+1	reviewed	missense	c.341	p.A114V	0.547	superfamily_Prion-like,HMMPfam_Prion	superfamily_Prion-like,HMMPfam_Prion	-	no_errors	
RAVER1	125950	genome.wustl.edu	37	19	10434107	10434107	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10434107	10434107	C	T	SNP	RAVER1	NM_133452	human	genbank	57_37b	-1	validated	missense	c.943	p.A315T	1.000	superfamily_RNA-binding domain RBD	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors	
SENP1	29843	genome.wustl.edu	37	12	48440181	48440182	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	48440181	48440182	AT	-	DEL	SENP1	NM_014554	human	genbank	57_37b	-1	validated	frame_shift_del	c.1827_1826	p.Y609fs	1.000:1.000	superfamily_SSF54001,HMMPfam_Peptidase_C48	superfamily_SSF54001,HMMPfam_Peptidase_C48	(deletion:cds_exon[48440139,48440231])	no_errors	
SERPINA2	390502	genome.wustl.edu	37	14	94832898	94832898	+	Silent	SNP	C	T	T	rs41301763	byCluster;byFrequency;by1000genomes	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	94832898	94832898	C	T	SNP	SERPINA2	ENST00000238576	human	ensembl	57_37b	-1	known	silent	c.138	p.E46	0.000	superfamily_Serpins,HMMPfam_Serpin	superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093	-		
SORCS1	114815	genome.wustl.edu	37	10	108412155	108412155	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	108412155	108412155	C	G	SNP	SORCS1	NM_001013031	human	genbank	57_37b	-1	reviewed	missense	c.2460	p.M820I	1.000	HMMSmart_PKD,superfamily_PKD,HMMPfam_PKD	superfamily_SSF110296,HMMSmart_VPS10,HMMSmart_PKD,superfamily_PKD,HMMPfam_PKD	-	no_errors	
SPEN	23013	genome.wustl.edu	37	1	16254679	16254679	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16254679	16254679	G	A	SNP	SPEN	NM_015001	human	genbank	57_37b	+1	reviewed	silent	c.1944	p.R648	0.952	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SPOC-like,HMMPfam_SPOC	-	no_errors	
SRGAP1	57522	genome.wustl.edu	37	12	64472709	64472709	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	64472709	64472709	C	T	SNP	SRGAP1	NM_020762	human	genbank	57_37b	+1	validated	missense	c.1136	p.T379M	1.000	NULL	HMMPfam_FCH,HMMSmart_SM00055,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
TOPORS	10210	genome.wustl.edu	37	9	32541997	32541997	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	32541997	32541997	G	T	SNP	TOPORS	NM_005802	human	genbank	57_37b	-1	validated	silent	c.2526	p.T842	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578403	7578403	+	Missense_Mutation	SNP	C	A	C	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C						Unknown	Unknown	Phase_IV	Capture			1	Illumina GAIIx	Illumina GAIIx	17	7578403	7578403	C	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.527	p.C176F	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
TRPM5	29850	genome.wustl.edu	37	11	2439542	2439542	+	Missense_Mutation	SNP	A	A	G	rs3986599	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	2439542	2439542	A	G	SNP	TRPM5	NM_014555	human	genbank	57_37b	-1	validated	missense	c.761	p.V254A	0.929	NULL	HMMPfam_Ion_trans	-		
UPF3B	65109	genome.wustl.edu	37	X	118968924	118968924	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	118968924	118968924	C	T	SNP	UPF3B	NM_080632	human	genbank	57_37b	-1	reviewed	missense	c.1369	p.D457N	0.996	NULL	HMMPfam_Smg4_UPF3,superfamily_RNA-binding domain RBD	-	no_errors	
USP39	10713	genome.wustl.edu	37	2	85857864	85857864	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	85857864	85857864	T	G	SNP	USP39	NM_006590	human	genbank	57_37b	+1	validated	silent	c.744	p.P248	1.000	superfamily_Cysteine proteinases,HMMPfam_UCH	HMMSmart_SM00290,superfamily_Cysteine proteinases,HMMPfam_UCH	-	no_errors	
XK	7504	genome.wustl.edu	37	X	37553705	37553705	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	37553705	37553705	C	T	SNP	XK	NM_021083	human	genbank	57_37b	+1	reviewed	missense	c.412	p.R138W	0.998	HMMPfam_XK-related	HMMPfam_XK-related	-	no_errors	
ZFHX4	79776	genome.wustl.edu	37	8	77768353	77768353	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	77768353	77768353	C	T	SNP	ZFHX4	NM_024721	human	genbank	57_37b	+1	validated	missense	c.9061	p.R3021C	1.000	NULL	HMMSmart_SM00355,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
ZNF765	91661	genome.wustl.edu	37	19	53911368	53911368	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53911368	53911368	A	G	SNP	ZNF765	NM_001040185	human	genbank	57_37b	+1	provisional	missense	c.560	p.H187R	0.002	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZSCAN21	7589	genome.wustl.edu	37	7	99654841	99654841	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EB-01A-11W-A050-09	TCGA-BH-A0EB-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99654841	99654841	G	A	SNP	ZSCAN21	NM_145914	human	genbank	57_37b	+1	validated	missense	c.212	p.C71Y	1.000	HMMPfam_SCAN,HMMSmart_SM00431	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
