Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ANKRD53	79998	genome.wustl.edu	37	2	71212405	71212405	+	Missense_Mutation	SNP	T	T	C	rs61732279	byCluster;byFrequency;by1000genomes	TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	71212405	71212405	T	C	SNP	ANKRD53	NM_001115116	human	genbank	57_37b	+1	validated	missense	c.1568	p.L523P	0.001	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-		
ATP1B1	481	genome.wustl.edu	37	1	169094123	169094124	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	169094123	169094124	-	T	INS	ATP1B1	NM_001677	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.228_229	p.L76fs	0.995:0.992	HMMPfam_Na_K-ATPase	HMMPfam_Na_K-ATPase,PatternScan_ATPASE_NA_K_BETA_1,PatternScan_ATPASE_NA_K_BETA_2	-	no_errors	
BRPF3	27154	genome.wustl.edu	37	6	36181879	36181879	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	36181879	36181879	A	G	SNP	BRPF3	NM_015695	human	genbank	57_37b	+1	validated	missense	c.2705	p.N902S	0.986	NULL	HMMPfam_EPL1,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1,superfamily_SSF63748,HMMPfam_PWWP,HMMSmart_PWWP	-	no_errors	
DDX17	10521	genome.wustl.edu	37	22	38890089	38890089	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	38890089	38890089	G	T	SNP	DDX17	NM_001098504	human	genbank	57_37b	-1	reviewed	missense	c.1262	p.T421K	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors	
ENSG00000246407	0	genome.wustl.edu	37	12	8384596	8384596	+	RNA	SNP	T	T	G	rs55877873	byCluster	TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	8384596	8384596	T	G	SNP	ENSG00000246407	ENST00000499592	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.001	-	-	-		
FZD3	7976	genome.wustl.edu	37	8	28385071	28385071	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	28385071	28385071	A	G	SNP	FZD3	NM_017412	human	genbank	57_37b	+1	reviewed	missense	c.794	p.N265S	1.000	HMMPfam_Frizzled	HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,HMMPfam_Frizzled	-	no_errors	
GATA3	2625	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-	novel	unknown	TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8111433	8111434	CA	-	DEL	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	(deletion:intron[8106102,8111435])	no_errors	
LRRC50	123872	genome.wustl.edu	37	16	84203706	84203706	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	84203706	84203706	G	A	SNP	LRRC50	NM_178452	human	genbank	57_37b	+1	validated	silent	c.1272	p.S424	0.000	NULL	superfamily_Outer arm dynein light chain 1,HMMSmart_SM00365,HMMPfam_LRR_1	-	no_errors	
MUC6	4588	genome.wustl.edu	37	11	1015877	1015880	+	Frame_Shift_Del	DEL	AGGG	AGGG	-	novel	unknown	TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	AGGG	AGGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1015877	1015880	AGGG	-	DEL	MUC6	NM_005961	human	genbank	57_37b	-1	validated	frame_shift_del	c.6924_6921	p.H2307fs	0.000:0.000:0.000:0.000	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00215,HMMSmart_SM00041	(deletion:cds_exon[1015762,1018770])	no_errors	
NCOR1	9611	genome.wustl.edu	37	17	16012217	16012217	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	16012217	16012217	T	A	SNP	NCOR1	NM_006311	human	genbank	57_37b	-1	reviewed	nonsense	c.2065	p.K689*	1.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	-	no_errors	
NGEF	25791	genome.wustl.edu	37	2	233759485	233759485	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	233759485	233759485	C	T	SNP	NGEF	NM_019850	human	genbank	57_37b	-1	validated	missense	c.970	p.V324M	1.000	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
NUP160	23279	genome.wustl.edu	37	11	47804690	47804690	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47804690	47804690	C	T	SNP	NUP160	NM_015231	human	genbank	57_37b	-1	validated	missense	c.4051	p.V1351M	1.000	NULL	PatternScan_HIS_ACID_PHOSPHAT_1	-	no_errors	
PABPC4L	132430	genome.wustl.edu	37	4	135121899	135121899	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	135121899	135121899	C	T	SNP	PABPC4L	NM_001114734	human	genbank	57_37b	-1	validated	silent	c.276	p.L92	0.663	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMSmart_SM00361	-	no_errors	
PDE11A	50940	genome.wustl.edu	37	2	178936669	178936669	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	178936669	178936669	G	A	SNP	PDE11A	NM_016953	human	genbank	57_37b	-1	reviewed	missense	c.496	p.P166S	1.000	NULL	superfamily_GAF domain-like,HMMPfam_GAF,HMMSmart_SM00065,superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors	
PDE3A	5139	genome.wustl.edu	37	12	20522252	20522252	+	Missense_Mutation	SNP	G	G	A	rs12305038	byCluster;by2Hit2Allele;by1000genomes	TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	20522252	20522252	G	A	SNP	PDE3A	NM_000921	human	genbank	57_37b	+1	validated	missense	c.34	p.D12N	0.042	NULL	superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-		
PIK3CA	5290	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178921553	178921553	T	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1035	p.N345K	1.000	HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PPP1R13B	23368	genome.wustl.edu	37	14	104206651	104206651	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	104206651	104206651	G	A	SNP	PPP1R13B	NM_015316	human	genbank	57_37b	-1	reviewed	missense	c.2102	p.A701V	1.000	NULL	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_SH3_1,HMMSmart_SH3	-	no_errors	
TEX15	56154	genome.wustl.edu	37	8	30705430	30705430	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0H3-01A-11D-A12Q-09	TCGA-BH-A0H3-11A-12D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	30705430	30705430	C	T	SNP	TEX15	NM_031271	human	genbank	57_37b	-1	validated	silent	c.1104	p.G368	0.005	NULL	NULL	-	no_errors	
