Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCB7	22	genome.wustl.edu	37	X	74296459	74296459	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	74296459	74296459	T	C	SNP	ABCB7	NM_004299	human	genbank	57_37b	-1	reviewed	missense	c.487	p.K163E	1.000	superfamily_ABC_TM_1,HMMPfam_ABC_membrane	superfamily_ABC_TM_1,HMMPfam_ABC_membrane,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ABCC1	4363	genome.wustl.edu	37	16	16218677	16218677	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	16218677	16218677	A	G	SNP	ABCC1	NM_004996	human	genbank	57_37b	+1	reviewed	missense	c.3622	p.N1208D	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_PROTEIN_KINASE_ATP,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ABCC6	368	genome.wustl.edu	37	16	16256897	16256897	+	Silent	SNP	G	G	A	rs59030767	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	16256897	16256897	G	A	SNP	ABCC6	NM_001171	human	genbank	57_37b	-1	reviewed	silent	c.3459	p.R1153	0.001	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-		
ADAM29	11086	genome.wustl.edu	37	4	175897313	175897313	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	175897313	175897313	C	T	SNP	ADAM29	NM_001130703	human	genbank	57_37b	+1	reviewed	missense	c.637	p.R213C	0.001	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR"	-	no_errors	
ADAMTS16	170690	genome.wustl.edu	37	5	5242243	5242243	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	5242243	5242243	T	A	SNP	ADAMTS16	NM_139056	human	genbank	57_37b	+1	reviewed	silent	c.2601	p.P867	0.000	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,PatternScan_CARBAMOYLTRANSFERASE,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	-	no_errors	
ADAMTSL1	92949	genome.wustl.edu	37	9	18775842	18775842	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	18775842	18775842	G	A	SNP	ADAMTSL1	NM_001040272	human	genbank	57_37b	+1	validated	silent	c.2499	p.P833	0.013	superfamily_TSP-1 type 1 repeat,HMMPfam_TSP_1,HMMSmart_SM00209	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,HMMPfam_PLAC	-	no_errors	
ADC	113451	genome.wustl.edu	37	1	33562360	33562360	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	33562360	33562360	G	A	SNP	ADC	NM_052998	human	genbank	57_37b	+1	validated	missense	c.806	p.G269D	0.997	HMMPfam_Orn_Arg_deC_N,superfamily_PLP-binding barrel,superfamily_Alanine racemase C-terminal domain-like	HMMPfam_Orn_Arg_deC_N,superfamily_PLP-binding barrel,PatternScan_ODR_DC_2_1,PatternScan_ODR_DC_2_2,superfamily_Alanine racemase C-terminal domain-like,HMMPfam_Orn_DAP_Arg_deC	-	no_errors	
ADCY5	111	genome.wustl.edu	37	3	123010174	123010174	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	123010174	123010174	C	T	SNP	ADCY5	NM_183357	human	genbank	57_37b	-1	validated	missense	c.3113	p.R1038Q	1.000	HMMSmart_CYCc	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053	-	no_errors	
ADNP	23394	genome.wustl.edu	37	20	49508350	49508350	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	49508350	49508350	G	A	SNP	ADNP	NM_015339	human	genbank	57_37b	-1	reviewed	silent	c.2901	p.D967	0.780	NULL	PatternScan_HOMEOBOX_1,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	-	no_errors	
ADNP2	22850	genome.wustl.edu	37	18	77895840	77895840	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	77895840	77895840	C	T	SNP	ADNP2	NM_014913	human	genbank	57_37b	+1	validated	silent	c.2544	p.H848	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00389	-	no_errors	
AHNAK	79026	genome.wustl.edu	37	11	62292952	62292952	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62292952	62292952	G	A	SNP	AHNAK	NM_001620	human	genbank	57_37b	-1	validated	silent	c.8937	p.G2979	0.405	NULL	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_CheC	-	no_errors	
AHNAK2	113146	genome.wustl.edu	37	14	105418263	105418263	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105418263	105418263	C	T	SNP	AHNAK2	NM_138420	human	genbank	57_37b	-1	validated	silent	c.3525	p.A1175	0.003	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_Involucrin	-	no_errors	
ALDH5A1	7915	genome.wustl.edu	37	6	24502792	24502792	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	24502792	24502792	A	G	SNP	ALDH5A1	NM_170740	human	genbank	57_37b	+1	reviewed	missense	c.396	p.I132M	0.522	superfamily_ALDH-like,HMMPfam_Aldedh	superfamily_ALDH-like,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors	
ANAPC1	64682	genome.wustl.edu	37	2	112560009	112560009	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	112560009	112560009	A	G	SNP	ANAPC1	NM_022662	human	genbank	57_37b	-1	validated	missense	c.4217	p.L1406P	1.000	NULL	HMMPfam_PC_rep	-	no_errors	
AP4M1	9179	genome.wustl.edu	37	7	99704464	99704464	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99704464	99704464	C	T	SNP	AP4M1	NM_004722	human	genbank	57_37b	+1	reviewed	nonsense	c.1321	p.R441*	0.996	HMMPfam_Adap_comp_sub,superfamily_AP50	PatternScan_CLAT_ADAPTOR_M_1,HMMPfam_Clat_adaptor_s,superfamily_Longin_like,HMMPfam_Adap_comp_sub,superfamily_AP50,PatternScan_CLAT_ADAPTOR_M_2	-	no_errors	
APC	324	genome.wustl.edu	37	5	112175041	112175041	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	112175041	112175041	A	C	SNP	APC	NM_000038	human	genbank	57_37b	+1	reviewed	missense	c.3750	p.K1250N	1.000	NULL	superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm,HMMPfam_APC_15aa,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_APC_basic,HMMPfam_EB1_binding	-	no_errors	
ARHGAP22	58504	genome.wustl.edu	37	10	49659122	49659122	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	49659122	49659122	C	T	SNP	ARHGAP22	NM_021226	human	genbank	57_37b	-1	validated	silent	c.1050	p.T350	0.000	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
ARHGAP29	9411	genome.wustl.edu	37	1	94668215	94668216	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	94668215	94668216	TT	-	DEL	ARHGAP29	NM_004815	human	genbank	57_37b	-1	validated	frame_shift_del	c.1028_1027	p.K343fs	0.998:0.996	NULL	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	(deletion:cds_exon[94668100,94668288])	no_errors	
ARPC1B	10095	genome.wustl.edu	37	7	98991736	98991736	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	98991736	98991736	T	C	SNP	ARPC1B	NM_005720	human	genbank	57_37b	+1	reviewed	silent	c.1074	p.D358	0.671	superfamily_WD40 repeat-like,HMMSmart_SM00320	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
ATP12A	479	genome.wustl.edu	37	13	25272825	25272825	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	25272825	25272825	C	T	SNP	ATP12A	NM_001676	human	genbank	57_37b	+1	reviewed	silent	c.1542	p.H514	0.000	superfamily_Calcium ATPase transmembrane domain M,superfamily_HAD-like,HMMPfam_Hydrolase,superfamily_Metal cation-transporting ATPase ATP-binding domain N	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors	
ATP13A4	84239	genome.wustl.edu	37	3	193183869	193183869	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	193183869	193183869	A	G	SNP	ATP13A4	ENST00000392443	human	ensembl	57_37b	-1	known	splice_site	c.1215+2	e11+2	0.294	-	-	-	no_errors	
ATRNL1	26033	genome.wustl.edu	37	10	117221463	117221463	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	117221463	117221463	T	C	SNP	ATRNL1	NM_207303	human	genbank	57_37b	+1	validated	missense	c.3335	p.I1112T	1.000	superfamily_EGF/Laminin	superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,HMMPfam_EGF_2,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMPfam_Kelch_2,superfamily_Plexin repeat,HMMSmart_SM00423,HMMPfam_PSI,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1	-	no_errors	
BAP1	8314	genome.wustl.edu	37	3	52440905	52440905	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52440905	52440905	T	C	SNP	BAP1	NM_004656	human	genbank	57_37b	-1	reviewed	missense	c.599	p.E200G	1.000	HMMPfam_Peptidase_C12,superfamily_Cysteine proteinases	HMMPfam_Peptidase_C12,superfamily_Cysteine proteinases	-	no_errors	
BIRC7	79444	genome.wustl.edu	37	20	61869314	61869314	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61869314	61869314	G	A	SNP	BIRC7	NM_139317	human	genbank	57_37b	+1	reviewed	missense	c.409	p.G137R	0.969	superfamily_Inhibitor of apoptosis (IAP) repeat,HMMSmart_SM00238,PatternScan_BIR_REPEAT_1,HMMPfam_BIR	superfamily_Inhibitor of apoptosis (IAP) repeat,HMMSmart_SM00238,PatternScan_BIR_REPEAT_1,HMMPfam_BIR,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors	
BMP8B	656	genome.wustl.edu	37	1	40228838	40228838	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	40228838	40228838	A	G	SNP	BMP8B	NM_001720	human	genbank	57_37b	-1	reviewed	missense	c.985	p.Y329H	1.000	superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-	no_errors	
BTN2A1	11120	genome.wustl.edu	37	6	26468547	26468547	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26468547	26468547	G	A	SNP	BTN2A1	NM_007049	human	genbank	57_37b	+1	reviewed	missense	c.1354	p.V452I	0.034	HMMPfam_SPRY,HMMSmart_SM00449	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors	
C11orf41	25758	genome.wustl.edu	37	11	33640180	33640180	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	33640180	33640180	G	A	SNP	C11orf41	NM_012194	human	genbank	57_37b	+1	validated	missense	c.4508	p.R1503Q	1.000	NULL	NULL	-	no_errors	
C11orf84	144097	genome.wustl.edu	37	11	63585474	63585474	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	63585474	63585474	C	T	SNP	C11orf84	NM_138471	human	genbank	57_37b	+1	predicted	missense	c.325	p.H109Y	0.927	NULL	NULL	-	no_errors	
C14orf174	161394	genome.wustl.edu	37	14	77845125	77845125	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	77845125	77845125	T	A	SNP	C14orf174	NM_001010860	human	genbank	57_37b	+1	provisional	missense	c.1364	p.F455Y	0.000	NULL	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2	-	no_errors	
C19orf22	91300	genome.wustl.edu	37	19	900926	900926	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	900926	900926	G	T	SNP	C19orf22	NM_138774	human	genbank	57_37b	-1	validated	silent	c.378	p.S126	0.267	NULL	superfamily_SSF82708	-	no_errors	
C1QTNF6	114904	genome.wustl.edu	37	22	37578518	37578518	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	37578518	37578518	A	G	SNP	C1QTNF6	NM_031910	human	genbank	57_37b	-1	validated	missense	c.547	p.F183L	1.000	superfamily_TNF_like,HMMPfam_C1q	HMMPfam_Collagen,superfamily_TNF_like,HMMPfam_C1q	-	no_errors	
C1orf58	148362	genome.wustl.edu	37	1	222897497	222897497	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	222897497	222897497	A	G	SNP	C1orf58	NM_144695	human	genbank	57_37b	+1	validated	silent	c.465	p.K155	1.000	HMMPfam_BRO1	HMMPfam_BRO1	-	no_errors	
C3orf63	23272	genome.wustl.edu	37	3	56667416	56667416	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	56667416	56667416	C	T	SNP	C3orf63	NM_001112736	human	genbank	57_37b	-1	validated	missense	c.3403	p.E1135K	0.405	NULL	NULL	-	no_errors	
C6orf81	221481	genome.wustl.edu	37	6	35715084	35715084	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	35715084	35715084	C	T	SNP	C6orf81	NM_145028	human	genbank	57_37b	+1	predicted	missense	c.572	p.T191M	0.156	HMMPfam_DUF634,superfamily_ARM-type_fold	HMMPfam_DUF634,superfamily_ARM-type_fold	-	no_errors	
C9orf156	51531	genome.wustl.edu	37	9	100684757	100684757	+	Missense_Mutation	SNP	A	A	G	rs3183927	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	100684757	100684757	A	G	SNP	C9orf156	NM_016481	human	genbank	57_37b	-1	validated	missense	c.19	p.S7P	0.000	NULL	HMMPfam_UPF0066,PatternScan_UPF0066	-		
CACNA1I	8911	genome.wustl.edu	37	22	40043828	40043828	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	40043828	40043828	T	C	SNP	CACNA1I	NM_021096	human	genbank	57_37b	+1	reviewed	silent	c.1464	p.H488	0.019	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors	
CAST	831	genome.wustl.edu	37	5	96101008	96101008	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	96101008	96101008	A	G	SNP	CAST	NM_001750	human	genbank	57_37b	+1	reviewed	silent	c.2016	p.K672	0.993	HMMPfam_Calpain_inhib	HMMPfam_Calpain_inhib	-	no_errors	
CCDC109A	90550	genome.wustl.edu	37	10	74618991	74618991	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	74618991	74618991	C	T	SNP	CCDC109A	NM_138357	human	genbank	57_37b	+1	provisional	missense	c.277	p.R93W	1.000	NULL	HMMPfam_DUF607	-	no_errors	
CCDC147	159686	genome.wustl.edu	37	10	106118199	106118199	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	106118199	106118199	A	G	SNP	CCDC147	NM_001008723	human	genbank	57_37b	+1	validated	missense	c.110	p.E37G	1.000	NULL	NULL	-	no_errors	
CDH20	28316	genome.wustl.edu	37	18	59157855	59157855	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	59157855	59157855	G	T	SNP	CDH20	NM_031891	human	genbank	57_37b	+1	reviewed	missense	c.69	p.W23C	0.994	NULL	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors	
CDKN2D	1032	genome.wustl.edu	37	19	10677827	10677827	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10677827	10677827	G	A	SNP	CDKN2D	NM_001800	human	genbank	57_37b	-1	reviewed	silent	c.408	p.D136	0.621	superfamily_ANK,HMMPfam_Ank	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors	
CENPE	1062	genome.wustl.edu	37	4	104096015	104096015	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	104096015	104096015	T	C	SNP	CENPE	NM_001813	human	genbank	57_37b	-1	validated	missense	c.1525	p.N509D	0.811	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,PatternScan_AA_TRNA_LIGASE_I	-	no_errors	
CFH	3075	genome.wustl.edu	37	1	196695952	196695952	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	196695952	196695952	C	T	SNP	CFH	NM_000186	human	genbank	57_37b	+1	reviewed	silent	c.2118	p.S706	0.009	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors	
CHD5	26038	genome.wustl.edu	37	1	6181297	6181297	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	6181297	6181297	C	T	SNP	CHD5	NM_015557	human	genbank	57_37b	-1	provisional	missense	c.4780	p.A1594T	0.700	NULL	PatternScan_CHROMO_1,HMMPfam_CHDNT,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,HMMSmart_RING,superfamily_Chromodomain-like,HMMSmart_CHROMO,superfamily_SSF52540,HMMPfam_Chromo,HMMSmart_DEXDc,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_DUF1087,HMMPfam_DUF1086,HMMPfam_CHDCT2	-	no_errors	
CLEC2A	387836	genome.wustl.edu	37	12	10078860	10078860	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	10078860	10078860	T	C	SNP	CLEC2A	NM_001130711	human	genbank	57_37b	-1	provisional	missense	c.138	p.I46M	0.128	superfamily_C-type lectin-like	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	-	no_errors	
CNKSR2	22866	genome.wustl.edu	37	X	21627677	21627678	+	In_Frame_Ins	INS	-	-	GAG	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	21627677	21627678	-	GAG	INS	CNKSR2	NM_014927	human	genbank	57_37b	+1	reviewed	in_frame_ins	c.2634_2635	p.882in_frame_insE	0.989:0.997	NULL	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_CRIC_ras_sig,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_DUF1170,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
CPSF3	51692	genome.wustl.edu	37	2	9570133	9570135	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	9570133	9570135	CTC	-	DEL	CPSF3	NM_016207	human	genbank	57_37b	+1	provisional	in_frame_del	c.196_198	p.L68in_frame_del	1.000:1.000:0.989	superfamily_Metallo-hydrolase/oxidoreductase,HMMPfam_Lactamase_B	superfamily_Metallo-hydrolase/oxidoreductase,HMMPfam_Lactamase_B,HMMPfam_RMMBL	(deletion:cds_exon[9570052,9570149])	no_errors	
CPXM2	119587	genome.wustl.edu	37	10	125521407	125521407	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	125521407	125521407	G	T	SNP	CPXM2	NM_198148	human	genbank	57_37b	-1	validated	silent	c.1758	p.S586	0.993	superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14,HMMSmart_SM00631	superfamily_Galactose-binding domain-like,HMMSmart_SM00231,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,HMMSmart_SM00631,superfamily_Carboxypeptidase regulatory domain	-	no_errors	
CRAT	1384	genome.wustl.edu	37	9	131864323	131864323	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	131864323	131864323	T	C	SNP	CRAT	NM_000755	human	genbank	57_37b	-1	reviewed	missense	c.644	p.D215G	0.994	superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf	superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2	-	no_errors	
CRIPAK	285464	genome.wustl.edu	37	4	1389289	1389289	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	1389289	1389289	C	T	SNP	CRIPAK	NM_175918	human	genbank	57_37b	+1	validated	silent	c.990	p.P330	0.008	HMMSmart_PostSET	HMMSmart_PostSET	-	no_errors	
CROT	54677	genome.wustl.edu	37	7	86998781	86998781	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	86998781	86998781	A	G	SNP	CROT	NM_001143935	human	genbank	57_37b	+1	reviewed	missense	c.721	p.T241A	1.000	superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf	superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2	-	no_errors	
CSMD1	64478	genome.wustl.edu	37	8	2815319	2815319	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	2815319	2815319	G	A	SNP	CSMD1	NM_033225	human	genbank	57_37b	-1	validated	missense	c.9716	p.T3239M	0.156	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10	-	no_errors	
CUL7	9820	genome.wustl.edu	37	6	43005511	43005511	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43005511	43005511	A	G	SNP	CUL7	NM_014780	human	genbank	57_37b	-1	reviewed	missense	c.5012	p.L1671P	1.000	NULL	PatternScan_CULLIN_1,superfamily_Gal_bind_like,HMMPfam_APC10,HMMPfam_Cullin,superfamily_Cullin_homology,superfamily_SSF46785	-	no_errors	
DALRD3	55152	genome.wustl.edu	37	3	49053683	49053684	+	Frame_Shift_Del	DEL	GT	GT	-	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49053683	49053684	GT	-	DEL	DALRD3	NM_001009996	human	genbank	57_37b	-1	validated	frame_shift_del	c.1237_1236	p.F414fs	1.000:0.518	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_DALR_1	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_DALR_1	(deletion:cds_exon[49053591,49053773])	no_errors	
DCAF4L2	138009	genome.wustl.edu	37	8	88885440	88885440	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	88885440	88885440	G	A	SNP	DCAF4L2	NM_152418	human	genbank	57_37b	-1	validated	missense	c.760	p.R254C	0.994	superfamily_WD40_like	PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	-	no_errors	
DDX20	11218	genome.wustl.edu	37	1	112305336	112305336	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	112305336	112305336	T	C	SNP	DDX20	NM_007204	human	genbank	57_37b	+1	reviewed	missense	c.1142	p.V381A	1.000	superfamily_SSF52540,HMMSmart_HELICc,HMMPfam_Helicase_C	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C	-	no_errors	
DENND1B	163486	genome.wustl.edu	37	1	197480015	197480015	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	197480015	197480015	C	T	SNP	DENND1B	NM_001142795	human	genbank	57_37b	-1	validated	missense	c.1843	p.D615N	0.998	NULL	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801	-	no_errors	
DNAH5	1767	genome.wustl.edu	37	5	13871098	13871098	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	13871098	13871098	G	A	SNP	DNAH5	NM_001369	human	genbank	57_37b	-1	reviewed	silent	c.3612	p.F1204	0.099	NULL	HMMPfam_DHC_N1,superfamily_Spectrin,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
DPP7	29952	genome.wustl.edu	37	9	140006430	140006430	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140006430	140006430	A	G	SNP	DPP7	NM_013379	human	genbank	57_37b	-1	reviewed	missense	c.1102	p.F368L	1.000	HMMPfam_Peptidase_S28	HMMPfam_Peptidase_S28,superfamily_SSF53474	-	no_errors	
DSP	1832	genome.wustl.edu	37	6	7542274	7542274	+	Silent	SNP	T	T	C	rs36087964	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	7542274	7542274	T	C	SNP	DSP	NM_004415	human	genbank	57_37b	+1	reviewed	silent	c.126	p.Y42	0.994	NULL	superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_Prefoldin,superfamily_tRNA-binding arm,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	-		
DST	667	genome.wustl.edu	37	6	56495093	56495095	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	56495093	56495095	CTT	-	DEL	DST	NM_001144769	human	genbank	57_37b	-1	reviewed	in_frame_del	c.4132_4130	p.E1377in_frame_del	1.000:1.000:1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_GAS2,HMMSmart_SM00243	(deletion:cds_exon[56495043,56495181])	no_errors	
DTX2	113878	genome.wustl.edu	37	7	76126704	76126704	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	76126704	76126704	C	T	SNP	DTX2	NM_001102594	human	genbank	57_37b	+1	validated	missense	c.1060	p.R354C	1.000	NULL	HMMPfam_WWE,HMMSmart_SM00678,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors	
DYTN	0	genome.wustl.edu	37	2	207527867	207527867	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	207527867	207527867	C	T	SNP	DYTN	NM_001093730	human	genbank	57_37b	-1	provisional	missense	c.1393	p.A465T	0.000	NULL	HMMPfam_efhand_1,superfamily_SSF47473,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1	-	no_errors	
EDNRB	1910	genome.wustl.edu	37	13	78477305	78477305	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	78477305	78477305	T	C	SNP	EDNRB	NM_000115	human	genbank	57_37b	-1	reviewed	missense	c.787	p.T263A	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
ENSG00000135976	0	genome.wustl.edu	37	2	97868069	97868069	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	97868069	97868069	C	T	SNP	ENSG00000135976	ENST00000461153	human	ensembl	57_37b	+1	known	silent	c.2490	p.D830	0.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors	
ENSG00000186629	0	genome.wustl.edu	37	19	6986335	6986335	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6986335	6986335	C	A	SNP	ENSG00000186629	ENST00000359590	human	ensembl	57_37b	-1	known	missense	c.173	p.R58M	0.000	NULL	PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	
ENSG00000214982	0	genome.wustl.edu	37	10	51631508	51631508	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	51631508	51631508	T	-	DEL	ENSG00000214982	ENST00000435772	human	ensembl	57_37b	+1	known	frame_shift_del	c.577	p.S193fs	0.000	NULL	HMMPfam_PARG_cat	(deletion:cds_exon[51630970,51631956])	no_errors	
ENSG00000245118	0	genome.wustl.edu	37	X	64744264	64744264	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	64744264	64744264	G	A	SNP	ENSG00000245118	ENST00000501447	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	
ENSG00000245272	0	genome.wustl.edu	37	4	68547834	68547834	+	RNA	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	68547834	68547834	T	C	SNP	ENSG00000245272	ENST00000501040	human	ensembl	57_37b	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	
ENSG00000247145	0	genome.wustl.edu	37	10	99153601	99153601	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	99153601	99153601	C	T	SNP	ENSG00000247145	ENST00000499093	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.017	-	-	-	no_errors	
EPAS1	2034	genome.wustl.edu	37	2	46607728	46607728	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	46607728	46607728	G	A	SNP	EPAS1	NM_001430	human	genbank	57_37b	+1	reviewed	nonsense	c.1917	p.W639*	1.000	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC,HMMPfam_HIF-1a_CTAD	-	no_errors	
FAM123B	139285	genome.wustl.edu	37	X	63411278	63411278	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	63411278	63411278	G	A	SNP	FAM123B	NM_152424	human	genbank	57_37b	-1	validated	missense	c.1889	p.A630V	0.001	NULL	HMMPfam_WTX	-	no_errors	
FAM151B	167555	genome.wustl.edu	37	5	79797660	79797660	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	79797660	79797660	T	C	SNP	FAM151B	NM_205548	human	genbank	57_37b	+1	predicted	silent	c.75	p.I25	0.985	NULL	HMMPfam_DUF2181	-	no_errors	
FAM35B	0	genome.wustl.edu	37	10	46927960	46927963	+	Frame_Shift_Del	DEL	ACAA	ACAA	-	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	ACAA	ACAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	46927960	46927963	ACAA	-	DEL	FAM35B	ENST00000301038	human	ensembl	57_37b	+1	known	frame_shift_del	c.479_482	p.K161fs	0.998:0.988:0.986:0.965	NULL	NULL	(deletion:cds_exon[46927783,46928011])	no_errors	
FAM47A	158724	genome.wustl.edu	37	X	34148695	34148695	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	34148695	34148695	A	T	SNP	FAM47A	NM_203408	human	genbank	57_37b	-1	predicted	missense	c.1701	p.H567Q	0.003	NULL	NULL	-	no_errors	
FAM47A	158724	genome.wustl.edu	37	X	34150200	34150200	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	34150200	34150200	C	T	SNP	FAM47A	NM_203408	human	genbank	57_37b	-1	predicted	missense	c.196	p.E66K	0.002	NULL	NULL	-	no_errors	
FAM73A	374986	genome.wustl.edu	37	1	78272735	78272735	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	78272735	78272735	A	T	SNP	FAM73A	NM_198549	human	genbank	57_37b	+1	predicted	missense	c.586	p.I196F	0.198	HMMPfam_DUF2217	HMMPfam_DUF2217	-	no_errors	
FBXO15	201456	genome.wustl.edu	37	18	71807443	71807443	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	71807443	71807443	A	G	SNP	FBXO15	NM_001142958	human	genbank	57_37b	-1	reviewed	missense	c.221	p.L74P	0.903	superfamily_SSF81383,HMMPfam_F-box	superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX	-	no_errors	
FGD2	221472	genome.wustl.edu	37	6	36978804	36978804	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	36978804	36978804	C	T	SNP	FGD2	NM_173558	human	genbank	57_37b	+1	validated	missense	c.356	p.A119V	0.786	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger	-	no_errors	
FKBP15	23307	genome.wustl.edu	37	9	115936859	115936859	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	115936859	115936859	A	G	SNP	FKBP15	NM_015258	human	genbank	57_37b	-1	validated	missense	c.2228	p.L743P	1.000	NULL	superfamily_FKBP-like,HMMPfam_FKBP_C	-	no_errors	
FKBP9	11328	genome.wustl.edu	37	7	33044891	33044891	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	33044891	33044891	G	A	SNP	FKBP9	NM_007270	human	genbank	57_37b	+1	validated	silent	c.1641	p.R547	0.990	superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1	superfamily_SSF54534,HMMPfam_FKBP_C,superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,PatternScan_ER_TARGET	-	no_errors	
FLII	2314	genome.wustl.edu	37	17	18149770	18149770	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18149770	18149770	G	A	SNP	FLII	NM_002018	human	genbank	57_37b	-1	reviewed	missense	c.3058	p.R1020C	1.000	superfamily_SSF55753,HMMSmart_GEL	superfamily_SSF52047,HMMPfam_LRR_1,superfamily_SSF52058,HMMSmart_LRR_TYP,superfamily_SSF55753,HMMSmart_GEL,HMMPfam_Gelsolin	-	no_errors	
FLNC	2318	genome.wustl.edu	37	7	128488091	128488091	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	128488091	128488091	G	A	SNP	FLNC	NM_001458	human	genbank	57_37b	+1	reviewed	missense	c.4549	p.V1517I	1.000	superfamily_E set domains,HMMPfam_Filamin,HMMSmart_SM00557	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_E set domains,HMMPfam_Filamin,HMMSmart_SM00557	-	no_errors	
FLRT3	23767	genome.wustl.edu	37	20	14307596	14307596	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	14307596	14307596	C	T	SNP	FLRT3	NM_013281	human	genbank	57_37b	-1	reviewed	missense	c.557	p.R186H	1.000	superfamily_SSF52058,HMMPfam_LRR_1	superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,HMMSmart_FN3,HMMPfam_fn3	-	no_errors	
FMR1	2332	genome.wustl.edu	37	X	147026442	147026442	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	147026442	147026442	G	A	SNP	FMR1	NM_002024	human	genbank	57_37b	+1	reviewed	missense	c.1525	p.E509K	1.000	NULL	HMMPfam_Agenet,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1	-	no_errors	
FOXD4L1	200350	genome.wustl.edu	37	2	114257228	114257228	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	114257228	114257228	G	A	SNP	FOXD4L1	NM_012184	human	genbank	57_37b	+1	reviewed	missense	c.395	p.G132D	1.000	"HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Fork_head"	"HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors	
FOXM1	2305	genome.wustl.edu	37	12	2968543	2968543	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	2968543	2968543	C	A	SNP	FOXM1	NM_202002	human	genbank	57_37b	-1	validated	missense	c.1667	p.S556I	0.001	NULL	"HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors	
FUT10	84750	genome.wustl.edu	37	8	33318928	33318928	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	33318928	33318928	A	G	SNP	FUT10	NM_032664	human	genbank	57_37b	-1	validated	missense	c.43	p.C15R	0.704	HMMPfam_Glyco_transf_10	HMMPfam_Glyco_transf_10	-	no_errors	
FZD9	8326	genome.wustl.edu	37	7	72849076	72849076	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	72849076	72849076	G	A	SNP	FZD9	NM_003508	human	genbank	57_37b	+1	reviewed	missense	c.739	p.A247T	0.999	HMMPfam_Frizzled	HMMPfam_Fz,superfamily_Frizzled_Cys-rich,HMMSmart_FRI,HMMPfam_Frizzled	-	no_errors	
GALNT1	2589	genome.wustl.edu	37	18	33234665	33234665	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	33234665	33234665	C	T	SNP	GALNT1	NM_020474	human	genbank	57_37b	+1	reviewed	silent	c.39	p.T13	1.000	NULL	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin	-	no_errors	
GALNT11	63917	genome.wustl.edu	37	7	151805352	151805352	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151805352	151805352	G	T	SNP	GALNT11	NM_022087	human	genbank	57_37b	+1	validated	missense	c.942	p.E314D	0.138	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,HMMSmart_SM00458,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin	-	no_errors	
GALNTL5	168391	genome.wustl.edu	37	7	151699798	151699798	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151699798	151699798	G	A	SNP	GALNTL5	NM_145292	human	genbank	57_37b	+1	validated	splice_site	c.659-1	e5-1	1.000	-	-	-	no_errors	
GBF1	8729	genome.wustl.edu	37	10	104122393	104122393	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	104122393	104122393	A	G	SNP	GBF1	NM_004193	human	genbank	57_37b	+1	provisional	missense	c.1845	p.I615M	0.000	NULL	superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7	-	no_errors	
GDI1	2664	genome.wustl.edu	37	X	153667353	153667353	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153667353	153667353	G	A	SNP	GDI1	NM_001493	human	genbank	57_37b	+1	reviewed	silent	c.255	p.G85	0.978	superfamily_FAD/NAD(P)-binding domain,HMMPfam_GDI	superfamily_FAD/NAD(P)-binding domain,HMMPfam_GDI	-	no_errors	
GINS4	84296	genome.wustl.edu	37	8	41397268	41397268	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	41397268	41397268	G	A	SNP	GINS4	NM_032336	human	genbank	57_37b	+1	validated	silent	c.369	p.S123	0.817	HMMPfam_Sld5	HMMPfam_Sld5	-	no_errors	
GPR101	83550	genome.wustl.edu	37	X	136113257	136113257	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	136113257	136113257	T	C	SNP	GPR101	NM_054021	human	genbank	57_37b	-1	validated	missense	c.577	p.T193A	0.993	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
GPS1	2873	genome.wustl.edu	37	17	80010320	80010320	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	80010320	80010320	T	C	SNP	GPS1	NM_212492	human	genbank	57_37b	+1	reviewed	silent	c.138	p.C46	0.998	NULL	HMMPfam_RPN7,HMMPfam_PCI,HMMSmart_PINT,superfamily_SSF46785	-	no_errors	
GRIN2A	2903	genome.wustl.edu	37	16	9858202	9858202	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	9858202	9858202	G	A	SNP	GRIN2A	NM_000833	human	genbank	57_37b	-1	reviewed	missense	c.3199	p.R1067W	1.000	HMMPfam_NMDAR2_C	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like II,HMMSmart_SM00079,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,HMMPfam_NMDAR2_C	-	no_errors	
GRM3	2913	genome.wustl.edu	37	7	86468223	86468223	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	86468223	86468223	C	T	SNP	GRM3	NM_000840	human	genbank	57_37b	+1	reviewed	nonsense	c.1393	p.R465*	0.677	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors	
GRWD1	83743	genome.wustl.edu	37	19	48953639	48953639	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	48953639	48953639	C	T	SNP	GRWD1	NM_031485	human	genbank	57_37b	+1	validated	silent	c.538	p.L180	1.000	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
GTPBP3	84705	genome.wustl.edu	37	19	17450401	17450401	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17450401	17450401	C	T	SNP	GTPBP3	NM_133644	human	genbank	57_37b	+1	validated	missense	c.1063	p.R355W	0.959	superfamily_SSF52540,HMMPfam_MMR_HSR1	HMMPfam_TrmE_N,superfamily_SSF52540,HMMPfam_MMR_HSR1	-	no_errors	
GYS1	2997	genome.wustl.edu	37	19	49490492	49490492	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49490492	49490492	C	T	SNP	GYS1	NM_002103	human	genbank	57_37b	-1	reviewed	missense	c.451	p.A151T	1.000	HMMPfam_Glycogen_syn,superfamily_SSF53756	HMMPfam_Glycogen_syn,superfamily_SSF53756	-	no_errors	
HDGFRP2	0	genome.wustl.edu	37	19	4493798	4493799	+	In_Frame_Ins	INS	-	-	TCC	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4493798	4493799	-	TCC	INS	HDGFRP2	NM_001001520	human	genbank	57_37b	+1	reviewed	in_frame_ins	c.777_778	p.263in_frame_insS	0.004:0.060	NULL	superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293	-	no_errors	
HECTD2	143279	genome.wustl.edu	37	10	93247499	93247499	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	93247499	93247499	G	C	SNP	HECTD2	NM_182765	human	genbank	57_37b	+1	validated	missense	c.1155	p.Q385H	0.730	NULL	superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors	
HGFAC	3083	genome.wustl.edu	37	4	3451048	3451048	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	3451048	3451048	C	T	SNP	HGFAC	NM_001528	human	genbank	57_37b	+1	reviewed	missense	c.1870	p.R624W	0.008	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	superfamily_Kringle-like,HMMSmart_FN2,HMMPfam_fn2,PatternScan_FN2_1,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,HMMPfam_fn1,PatternScan_FN1_1,HMMSmart_FN1,PatternScan_EGF_2,HMMSmart_KR,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
HIVEP2	3097	genome.wustl.edu	37	6	143095539	143095539	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	143095539	143095539	T	C	SNP	HIVEP2	NM_006734	human	genbank	57_37b	-1	provisional	missense	c.337	p.T113A	0.917	NULL	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors	
IDS	3423	genome.wustl.edu	37	X	148579795	148579795	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	148579795	148579795	C	T	SNP	IDS	NM_000202	human	genbank	57_37b	-1	reviewed	missense	c.551	p.C184Y	1.000	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2	-	no_errors	
IFNA16	3449	genome.wustl.edu	37	9	21216922	21216922	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	21216922	21216922	C	T	SNP	IFNA16	NM_002173	human	genbank	57_37b	-1	provisional	missense	c.383	p.G128E	0.001	HMMPfam_Interferon,superfamily_4-helical cytokines,HMMSmart_SM00076	HMMPfam_Interferon,superfamily_4-helical cytokines,HMMSmart_SM00076,PatternScan_INTERFERON_A_B_D	-	no_errors	
IL25	64806	genome.wustl.edu	37	14	23844943	23844943	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23844943	23844943	T	C	SNP	IL25	NM_022789	human	genbank	57_37b	+1	reviewed	missense	c.388	p.S130P	0.999	HMMPfam_IL17,superfamily_Cystine-knot cytokines	HMMPfam_IL17,superfamily_Cystine-knot cytokines	-	no_errors	
IMPG2	50939	genome.wustl.edu	37	3	100992437	100992439	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	100992437	100992439	TTC	-	DEL	IMPG2	NM_016247	human	genbank	57_37b	-1	validated	in_frame_del	c.816_814	p.E272in_frame_del	0.920:0.979:0.983	superfamily_SEA domain,HMMPfam_SEA,HMMSmart_SM00200	superfamily_SEA domain,HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_2,superfamily_EGF/Laminin	(deletion:cds_exon[100992425,100992586])	no_errors	
INPP5K	51763	genome.wustl.edu	37	17	1401279	1401279	+	Missense_Mutation	SNP	G	G	A	rs79971656	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	1401279	1401279	G	A	SNP	INPP5K	NM_016532	human	genbank	57_37b	-1	reviewed	missense	c.914	p.T305M	0.015	superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos	superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos	-		
INTS4	92105	genome.wustl.edu	37	11	77618841	77618841	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	77618841	77618841	A	G	SNP	INTS4	NM_033547	human	genbank	57_37b	-1	validated	silent	c.1938	p.L646	1.000	NULL	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
INTS8	55656	genome.wustl.edu	37	8	95869179	95869179	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	95869179	95869179	C	T	SNP	INTS8	NM_017864	human	genbank	57_37b	+1	provisional	nonsense	c.1927	p.R643*	1.000	NULL	NULL	-	no_errors	
ITGB2	3689	genome.wustl.edu	37	21	46310051	46310051	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	46310051	46310051	T	C	SNP	ITGB2	NM_000211	human	genbank	57_37b	-1	reviewed	missense	c.1499	p.D500G	1.000	NULL	HMMSmart_PSI,HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300,HMMSmart_VWA,superfamily_SSF69179,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_INTEGRIN_BETA,HMMPfam_EGF_2,superfamily_Integrin_bsu_tail,HMMPfam_Integrin_B_tail,HMMPfam_Integrin_b_cyt	-	no_errors	
KCNH3	23416	genome.wustl.edu	37	12	49934840	49934840	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	49934840	49934840	G	A	SNP	KCNH3	NM_012284	human	genbank	57_37b	+1	validated	missense	c.235	p.V79I	0.968	HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS	PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS,HMMSmart_PAC,superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding	-	no_errors	
KCNJ10	3766	genome.wustl.edu	37	1	160012073	160012073	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160012073	160012073	C	T	SNP	KCNJ10	NM_002241	human	genbank	57_37b	-1	reviewed	missense	c.250	p.V84M	0.966	superfamily_Voltage-gated potassium channels,HMMPfam_IRK	superfamily_Voltage-gated potassium channels,HMMPfam_IRK,superfamily_E set domains	-	no_errors	
KDM6A	7403	genome.wustl.edu	37	X	44945128	44945128	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	44945128	44945128	A	G	SNP	KDM6A	NM_021140	human	genbank	57_37b	+1	reviewed	missense	c.3452	p.N1151S	1.000	HMMSmart_JmjC,HMMPfam_JmjC	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR,HMMSmart_JmjC,HMMPfam_JmjC	-	no_errors	
KIAA0240	23506	genome.wustl.edu	37	6	42797791	42797791	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42797791	42797791	C	T	SNP	KIAA0240	NM_015349	human	genbank	57_37b	+1	validated	missense	c.1720	p.P574S	1.000	NULL	NULL	-	no_errors	
KIAA0802	23255	genome.wustl.edu	37	18	8824894	8824894	+	Missense_Mutation	SNP	C	C	T	rs115963216	byCluster;by1000genomes	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	8824894	8824894	C	T	SNP	KIAA0802	NM_015210	human	genbank	57_37b	+1	predicted	missense	c.3386	p.P1129L	0.000	NULL	NULL	-		
KIAA1543	57662	genome.wustl.edu	37	19	7676815	7676815	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	7676815	7676815	C	T	SNP	KIAA1543	NM_001080429	human	genbank	57_37b	+1	validated	missense	c.1517	p.A506V	0.998	NULL	superfamily_Calponin-homology domain CH-domain,superfamily_PRC-barrel domain,HMMPfam_DUF1781	-	no_errors	
KIF22	3835	genome.wustl.edu	37	16	29809769	29809769	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	29809769	29809769	A	G	SNP	KIF22	NM_007317	human	genbank	57_37b	+1	reviewed	missense	c.341	p.H114R	1.000	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,HMMSmart_HhH1	-	no_errors	
KLHL7	55975	genome.wustl.edu	37	7	23145676	23145678	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	23145676	23145678	AAG	-	DEL	KLHL7	NM_001031710	human	genbank	57_37b	+1	reviewed	in_frame_del	c.31_33	p.K13in_frame_del	1.000:1.000:1.000	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch	(deletion:cds_exon[23145646,23145765])	no_errors	
KRTAP4-2	85291	genome.wustl.edu	37	17	39334274	39334274	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39334274	39334274	G	A	SNP	KRTAP4-2	NM_033062	human	genbank	57_37b	-1	reviewed	missense	c.143	p.P48L	0.024	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors	
KRTCAP2	200185	genome.wustl.edu	37	1	155145235	155145235	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155145235	155145235	A	G	SNP	KRTCAP2	NM_173852	human	genbank	57_37b	-1	validated	silent	c.216	p.G72	0.999	HMMPfam_Keratin_assoc	HMMPfam_Keratin_assoc	-	no_errors	
L1TD1	54596	genome.wustl.edu	37	1	62672476	62672476	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	62672476	62672476	T	A	SNP	L1TD1	NM_019079	human	genbank	57_37b	+1	validated	missense	c.176	p.M59K	0.616	NULL	HMMPfam_Transposase_22	-	no_errors	
LAMA3	3909	genome.wustl.edu	37	18	21419894	21419894	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	21419894	21419894	G	T	SNP	LAMA3	NM_198129	human	genbank	57_37b	+1	reviewed	splice_site	c.3336+1	e27+1	1.000	-	-	-	no_errors	
LCT	3938	genome.wustl.edu	37	2	136558374	136558374	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	136558374	136558374	A	T	SNP	LCT	NM_002299	human	genbank	57_37b	-1	reviewed	missense	c.4669	p.S1557T	0.992	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat	superfamily_Glyco_hydro_cat,HMMPfam_Glyco_hydro_1,PatternScan_GLYCOSYL_HYDROL_F1_2,PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors	
LGR5	8549	genome.wustl.edu	37	12	71974205	71974205	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	71974205	71974205	T	C	SNP	LGR5	NM_003667	human	genbank	57_37b	+1	provisional	splice_site	c.1552+2	e16+2	1.000	-	-	-	no_errors	
LIMK2	3985	genome.wustl.edu	37	22	31658675	31658675	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	31658675	31658675	C	T	SNP	LIMK2	NM_001031801	human	genbank	57_37b	+1	reviewed	missense	c.689	p.A230V	0.966	NULL	HMMSmart_LIM,HMMPfam_LIM,superfamily_SSF57716,PatternScan_LIM_DOMAIN_1,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_PP1_inhibitor,superfamily_PP1_inhibitor	-	no_errors	
LOC100131573	0	genome.wustl.edu	37	5	93928714	93928716	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	93928714	93928716	AGA	-	DEL	LOC100131573	XM_001716404	human	genbank	57_37b	+1	model	in_frame_del	c.362_364	p.K122in_frame_del	1.000:0.997:0.990	NULL	NULL	(deletion:cds_exon[93928433,93928849])	no_errors	
LOC100288131	0	genome.wustl.edu	37	14	101194837	101194837	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	101194837	101194837	G	A	SNP	LOC100288131	XM_002343290	human	genbank	57_37b	-1	model	missense	c.287	p.A96V	0.012	NULL	NULL	-	no_errors	
LOC100289092	0	genome.wustl.edu	37	16	28884850	28884850	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	28884850	28884850	G	A	SNP	LOC100289092	XM_002343433	human	genbank	57_37b	-1	model	silent	c.501	p.D167	0.991	NULL	NULL	-	no_errors	
LOC121456	121456	genome.wustl.edu	37	12	98850411	98850412	+	RNA	INS	-	-	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	98850411	98850412	-	G	INS	LOC121456	XR_016411	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.990:0.994	-	-	-	no_errors	
LOC728310	728310	genome.wustl.edu	37	15	29090683	29090684	+	RNA	INS	-	-	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	29090683	29090684	-	G	INS	LOC728310	XR_078490	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	
LOXL3	84695	genome.wustl.edu	37	2	74761116	74761116	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	74761116	74761116	A	T	SNP	LOXL3	NM_032603	human	genbank	57_37b	-1	reviewed	missense	c.2081	p.V694D	1.000	HMMPfam_Lysyl_oxidase	superfamily_Srcr_receptor,HMMSmart_SR,HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Lysyl_oxidase,PatternScan_LYSYL_OXIDASE	-	no_errors	
LRP4	4038	genome.wustl.edu	37	11	46898298	46898298	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	46898298	46898298	T	C	SNP	LRP4	NM_002334	human	genbank	57_37b	-1	validated	missense	c.3361	p.T1121A	1.000	superfamily_YWTD domain,HMMPfam_Ldl_recept_b,HMMSmart_SM00135	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	-	no_errors	
LRTM1	57408	genome.wustl.edu	37	3	54952776	54952776	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	54952776	54952776	C	T	SNP	LRTM1	NM_020678	human	genbank	57_37b	-1	provisional	missense	c.748	p.A250T	0.020	NULL	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082	-	no_errors	
LTV1	84946	genome.wustl.edu	37	6	144179065	144179065	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	144179065	144179065	G	A	SNP	LTV1	NM_032860	human	genbank	57_37b	+1	provisional	missense	c.716	p.R239H	1.000	HMMPfam_LTV	HMMPfam_LTV	-	no_errors	
LUZP4	51213	genome.wustl.edu	37	X	114536623	114536623	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	114536623	114536623	A	G	SNP	LUZP4	NM_016383	human	genbank	57_37b	+1	validated	missense	c.158	p.N53S	0.000	NULL	NULL	-	no_errors	
LYG2	254773	genome.wustl.edu	37	2	99858889	99858889	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	99858889	99858889	C	T	SNP	LYG2	NM_175735	human	genbank	57_37b	-1	reviewed	missense	c.577	p.D193N	0.995	superfamily_SSF53955	superfamily_SSF53955,HMMPfam_SLT	-	no_errors	
MAGEB4	4115	genome.wustl.edu	37	X	30260720	30260720	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	30260720	30260720	G	A	SNP	MAGEB4	NM_002367	human	genbank	57_37b	+1	reviewed	silent	c.468	p.Q156	0.000	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors	
MAML3	55534	genome.wustl.edu	37	4	140640648	140640648	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	140640648	140640648	T	C	SNP	MAML3	NM_018717	human	genbank	57_37b	-1	validated	silent	c.3231	p.Q1077	0.497	NULL	HMMPfam_MamL-1	-	no_errors	
MAN2A2	4122	genome.wustl.edu	37	15	91453858	91453858	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	91453858	91453858	C	A	SNP	MAN2A2	NM_006122	human	genbank	57_37b	+1	validated	missense	c.1705	p.H569N	1.000	superfamily_SSF88688,HMMPfam_Alpha-mann_mid	superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38,superfamily_SSF88688,HMMPfam_Alpha-mann_mid,superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C	-	no_errors	
MAP2K4	6416	genome.wustl.edu	37	17	12028690	12028690	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	12028690	12028690	T	C	SNP	MAP2K4	NM_003010	human	genbank	57_37b	+1	reviewed	splice_site	c.891+2	e8+2	1.000	-	-	-	no_errors	
MAP3K8	1326	genome.wustl.edu	37	10	30747044	30747044	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	30747044	30747044	G	T	SNP	MAP3K8	NM_005204	human	genbank	57_37b	+1	reviewed	missense	c.905	p.R302M	0.994	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMSmart_SM00219,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMSmart_SM00219,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MAPKBP1	23005	genome.wustl.edu	37	15	42110267	42110267	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42110267	42110267	C	T	SNP	MAPKBP1	NM_001128608	human	genbank	57_37b	+1	validated	silent	c.1983	p.D661	0.998	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_PTS_HPR_SER	-	no_errors	
MBD1	4152	genome.wustl.edu	37	18	47803052	47803052	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	47803052	47803052	G	A	SNP	MBD1	NM_015846	human	genbank	57_37b	-1	reviewed	missense	c.455	p.T152M	0.989	NULL	HMMPfam_MBD,superfamily_DNA-binding domain,HMMSmart_SM00391,HMMPfam_zf-CXXC	-	no_errors	
MBOAT4	619373	genome.wustl.edu	37	8	29990074	29990074	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	29990074	29990074	T	C	SNP	MBOAT4	NM_001100916	human	genbank	57_37b	-1	validated	silent	c.693	p.G231	0.000	HMMPfam_MBOAT	HMMPfam_MBOAT	-	no_errors	
MCM3AP	8888	genome.wustl.edu	37	21	47663439	47663439	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	47663439	47663439	C	T	SNP	MCM3AP	NM_003906	human	genbank	57_37b	-1	reviewed	missense	c.5236	p.A1746T	0.250	NULL	superfamily_SSF54928,HMMPfam_SAC3_GANP	-	no_errors	
MED23	9439	genome.wustl.edu	37	6	131923494	131923495	+	Frame_Shift_Del	DEL	TA	TA	-	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	131923494	131923495	TA	-	DEL	MED23	NM_004830	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1959_1958	p.I653fs	0.995:1.000	NULL	NULL	(deletion:cds_exon[131923358,131923521])	no_errors	
MEGF8	1954	genome.wustl.edu	37	19	42841287	42841289	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42841287	42841289	TCT	-	DEL	MEGF8	NM_001410	human	genbank	57_37b	+1	validated	in_frame_del	c.1442_1444	p.F483in_frame_del	1.000:1.000:1.000	superfamily_Gal_oxid_central,HMMPfam_Kelch_1	superfamily_CUB,HMMSmart_CUB,HMMPfam_CUB,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_PSI,PatternScan_C_TYPE_LECTIN_1,HMMPfam_PSI,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,superfamily_SSF57196,PatternScan_ASX_HYDROXYL,HMMPfam_Laminin_EGF,PatternScan_EGF_LAM_1,HMMSmart_EGF_Lam	(deletion:cds_exon[42841236,42841358])	no_errors	
MLH1	4292	genome.wustl.edu	37	3	37042542	37042542	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	37042542	37042542	G	T	SNP	MLH1	NM_000249	human	genbank	57_37b	+1	reviewed	nonsense	c.304	p.E102*	1.000	superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMSmart_HATPase_c,PatternScan_DNA_MISMATCH_REPAIR_1	superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMSmart_HATPase_c,PatternScan_DNA_MISMATCH_REPAIR_1,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_DNA_mis_repair	-	no_errors	
MORN1	79906	genome.wustl.edu	37	1	2319730	2319730	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	2319730	2319730	C	T	SNP	MORN1	ENST00000378525	human	ensembl	57_37b	-1	known	missense	c.80	p.R27H	0.041	NULL	NULL	-	no_errors	
MRGPRX1	259249	genome.wustl.edu	37	11	18955816	18955816	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	18955816	18955816	C	T	SNP	MRGPRX1	NM_147199	human	genbank	57_37b	-1	provisional	nonsense	c.516	p.W172*	0.009	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
MTHFD1	4522	genome.wustl.edu	37	14	64891576	64891576	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	64891576	64891576	C	T	SNP	MTHFD1	NM_005956	human	genbank	57_37b	+1	reviewed	missense	c.782	p.A261V	1.000	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_THF_DHG_CYH_C	superfamily_Aminoacid dehydrogenase-like N-terminal domain,HMMPfam_THF_DHG_CYH,PatternScan_THF_DHG_CYH_1,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_THF_DHG_CYH_C,PatternScan_THF_DHG_CYH_2,HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_FTHFS_1,PatternScan_FTHFS_2	-	no_errors	
MUC2	4583	genome.wustl.edu	37	11	1101943	1101943	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1101943	1101943	T	C	SNP	MUC2	NM_002457	human	genbank	57_37b	+1	reviewed	silent	c.7695	p.A2565	0.658	HMMPfam_VWC,HMMSmart_SM00214	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMSmart_SM00214,PatternScan_VWFC_1,PatternScan_EGF_1,HMMPfam_VWC,HMMPfam_Cys_knot,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors	
MUC5B	727897	genome.wustl.edu	37	11	1268579	1268579	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1268579	1268579	T	G	SNP	MUC5B	NM_002458	human	genbank	57_37b	+1	validated	missense	c.10478	p.V3493G	0.000	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot,PatternScan_CTCK_1	-	no_errors	
MYH15	22989	genome.wustl.edu	37	3	108129537	108129537	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	108129537	108129537	T	C	SNP	MYH15	NM_014981	human	genbank	57_37b	-1	validated	missense	c.4448	p.Q1483R	1.000	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,superfamily_Prefoldin,HMMPfam_Myosin_tail_1,superfamily_Spectrin repeat	-	no_errors	
MYH15	22989	genome.wustl.edu	37	3	108189615	108189615	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	108189615	108189615	G	A	SNP	MYH15	NM_014981	human	genbank	57_37b	-1	validated	missense	c.1373	p.A458V	0.007	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
MYST4	23522	genome.wustl.edu	37	10	76789124	76789124	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	76789124	76789124	G	A	SNP	MYST4	NM_012330	human	genbank	57_37b	+1	validated	silent	c.4542	p.K1514	0.803	NULL	"HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_MOZ_SAS"	-	no_errors	
MYT1L	23040	genome.wustl.edu	37	2	1946770	1946771	+	In_Frame_Ins	INS	-	-	TCC	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	1946770	1946771	-	TCC	INS	MYT1L	NM_015025	human	genbank	57_37b	-1	validated	in_frame_ins	c.489_488	p.167in_frame_insE	0.991:0.950	NULL	superfamily_SSF103637,HMMPfam_zf-C2HC,HMMPfam_MYT1,PatternScan_EF_HAND_1	-	no_errors	
NAA20	0	genome.wustl.edu	37	20	20003100	20003100	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	20003100	20003100	T	C	SNP	NAA20	NM_016100	human	genbank	57_37b	+1	validated	silent	c.54	p.I18	1.000	superfamily_Acyl-CoA N-acyltransferases (Nat)	superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_Acetyltransf_1	-	no_errors	
NALCN	259232	genome.wustl.edu	37	13	101714459	101714459	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	101714459	101714459	T	C	SNP	NALCN	NM_052867	human	genbank	57_37b	-1	validated	missense	c.4616	p.Y1539C	1.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors	
NAT10	55226	genome.wustl.edu	37	11	34164994	34164994	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	34164994	34164994	A	G	SNP	NAT10	NM_024662	human	genbank	57_37b	+1	validated	missense	c.2888	p.Y963C	1.000	NULL	HMMPfam_DUF1726,HMMPfam_DUF699,superfamily_Acyl-CoA N-acyltransferases (Nat)	-	no_errors	
NEK9	91754	genome.wustl.edu	37	14	75577041	75577041	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	75577041	75577041	T	C	SNP	NEK9	NM_033116	human	genbank	57_37b	-1	validated	silent	c.972	p.A324	0.999	superfamily_Kinase_like	PatternScan_RCC1_1,PatternScan_RCC1_2,PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,superfamily_RCC1/BLIP-II,HMMPfam_RCC1	-	no_errors	
NID1	4811	genome.wustl.edu	37	1	236212189	236212189	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	236212189	236212189	G	A	SNP	NID1	NM_002508	human	genbank	57_37b	-1	reviewed	missense	c.326	p.A109V	0.977	HMMSmart_SM00539	HMMSmart_SM00539,HMMPfam_NIDO,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMSmart_SM00682,HMMPfam_G2F,superfamily_GFP-like,PatternScan_EGF_CA,HMMPfam_EGF_CA,superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,PatternScan_EGF_1	-	no_errors	
NKD2	85409	genome.wustl.edu	37	5	1033615	1033615	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	1033615	1033615	G	A	SNP	NKD2	NM_033120	human	genbank	57_37b	+1	provisional	splice_site	c.330+1	e5+1	0.284	-	-	-	no_errors	
NLGN3	54413	genome.wustl.edu	37	X	70389300	70389300	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	70389300	70389300	C	A	SNP	NLGN3	NM_018977	human	genbank	57_37b	+1	reviewed	missense	c.1840	p.L614M	1.000	superfamily_SSF53474	HMMPfam_COesterase,superfamily_SSF53474,PatternScan_CARBOXYLESTERASE_B_2	-	no_errors	
NOL9	79707	genome.wustl.edu	37	1	6610529	6610529	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	6610529	6610529	G	A	SNP	NOL9	NM_024654	human	genbank	57_37b	-1	validated	silent	c.543	p.Y181	0.001	NULL	HMMPfam_NUC156	-	no_errors	
NPR2	4882	genome.wustl.edu	37	9	35792578	35792578	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35792578	35792578	G	A	SNP	NPR2	NM_003995	human	genbank	57_37b	+1	reviewed	missense	c.173	p.R58Q	1.000	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_ANF_RECEPTORS,HMMSmart_SM00220,HMMSmart_SM00219,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors	
NR1D1	9572	genome.wustl.edu	37	17	38252334	38252334	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	38252334	38252334	C	T	SNP	NR1D1	NM_021724	human	genbank	57_37b	-1	provisional	missense	c.611	p.R204H	1.000	HMMPfam_zf-C4,superfamily_SSF57716	HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors	
NRXN1	9378	genome.wustl.edu	37	2	50758375	50758375	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	50758375	50758375	C	T	SNP	NRXN1	NM_001135659	human	genbank	57_37b	-1	reviewed	silent	c.2457	p.T819	1.000	superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2	superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMSmart_EGF,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMSmart_4.1m	-	no_errors	
ODZ1	10178	genome.wustl.edu	37	X	123657271	123657271	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	123657271	123657271	C	T	SNP	ODZ1	NM_014253	human	genbank	57_37b	-1	reviewed	silent	c.2976	p.P992	0.956	NULL	HMMPfam_Ten_N,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF,superfamily_SSF57196,superfamily_SSF101898,HMMPfam_NHL,superfamily_N2O_reductase_N,HMMPfam_RHS_repeat	-	no_errors	
ODZ3	55714	genome.wustl.edu	37	4	183714372	183714372	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	183714372	183714372	C	T	SNP	ODZ3	NM_001080477	human	genbank	57_37b	+1	provisional	nonsense	c.6547	p.R2183*	0.997	NULL	HMMPfam_Ten_N,HMMPfam_EGF_2,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196,HMMSmart_EGF,superfamily_CarboxypepD_reg,superfamily_SSF101898,HMMPfam_NHL,superfamily_SSF63829,HMMPfam_RHS_repeat	-	no_errors	
OR2W3	343171	genome.wustl.edu	37	1	248058990	248058990	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248058990	248058990	G	A	SNP	OR2W3	NM_001001957	human	genbank	57_37b	+1	provisional	silent	c.102	p.A34	0.002	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR5T2	219464	genome.wustl.edu	37	11	55999765	55999765	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55999765	55999765	C	T	SNP	OR5T2	NM_001004746	human	genbank	57_37b	-1	provisional	silent	c.897	p.V299	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OSBPL1A	114876	genome.wustl.edu	37	18	21759703	21759703	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	21759703	21759703	G	A	SNP	OSBPL1A	NM_080597	human	genbank	57_37b	-1	reviewed	nonsense	c.1909	p.R637*	0.999	HMMPfam_Oxysterol_BP	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_Oxysterol_BP,PatternScan_OSBP	-	no_errors	
PCBP2	5094	genome.wustl.edu	37	12	53848642	53848642	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53848642	53848642	A	G	SNP	PCBP2	NM_005016	human	genbank	57_37b	+1	reviewed	missense	c.58	p.M20V	1.000	HMMSmart_KH,superfamily_SSF54791,HMMPfam_KH_1	HMMSmart_KH,superfamily_SSF54791,HMMPfam_KH_1	-	no_errors	
PCDHGA3	56112	genome.wustl.edu	37	5	140724340	140724340	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140724340	140724340	A	G	SNP	PCDHGA3	NM_018916	human	genbank	57_37b	+1	reviewed	missense	c.740	p.Y247C	0.997	superfamily_Cadherin-like,HMMPfam_Cadherin	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PCDHGB7	56099	genome.wustl.edu	37	5	140799608	140799608	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140799608	140799608	G	C	SNP	PCDHGB7	NM_018927	human	genbank	57_37b	+1	reviewed	missense	c.2182	p.E728Q	0.003	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PDE6B	5158	genome.wustl.edu	37	4	660344	660344	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	660344	660344	G	A	SNP	PDE6B	NM_000283	human	genbank	57_37b	+1	reviewed	missense	c.2293	p.A765T	0.412	superfamily_HD-domain/PDEase-like,HMMPfam_PDEase_I	superfamily_GAF domain-like,HMMPfam_GAF,HMMSmart_SM00065,superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors	
PER1	5187	genome.wustl.edu	37	17	8048217	8048217	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	8048217	8048217	G	A	SNP	PER1	NM_002616	human	genbank	57_37b	-1	reviewed	silent	c.2313	p.D771	0.997	NULL	HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3	-	no_errors	
PEX2	0	genome.wustl.edu	37	8	77896091	77896091	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	77896091	77896091	A	G	SNP	PEX2	NM_000318	human	genbank	57_37b	-1	reviewed	silent	c.324	p.V108	0.905	HMMPfam_Pex2_Pex12	HMMPfam_Pex2_Pex12,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors	
PIGW	284098	genome.wustl.edu	37	17	34893944	34893944	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	34893944	34893944	C	G	SNP	PIGW	NM_178517	human	genbank	57_37b	+1	validated	missense	c.994	p.H332D	0.000	HMMPfam_GWT1	HMMPfam_GWT1	-	no_errors	
PIK3C2A	5286	genome.wustl.edu	37	11	17122898	17122900	+	In_Frame_Del	DEL	AAC	AAC	-	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	AAC	AAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	17122898	17122900	AAC	-	DEL	PIK3C2A	NM_002645	human	genbank	57_37b	-1	validated	in_frame_del	c.3935_3933	p.L1311in_frame_del	1.000:1.000:1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146	superfamily_Ubiquitin-like,HMMPfam_PI3K_rbd,HMMSmart_SM00144,HMMSmart_SM00142,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_PI3K_C2,superfamily_ARM repeat,HMMSmart_SM00145,HMMPfam_PI3Ka,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMPfam_C2	(deletion:cds_exon[17122825,17122981])	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178916938	178916940	+	In_Frame_Del	DEL	GAA	GAA	-	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178916938	178916940	GAA	-	DEL	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	in_frame_del	c.325_327	p.E110in_frame_del	1.000:1.000:1.000	superfamily_SSF54236	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	(deletion:cds_exon[178916614,178916965])	no_errors	
PIWIL1	9271	genome.wustl.edu	37	12	130833950	130833950	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	130833950	130833950	A	G	SNP	PIWIL1	NM_004764	human	genbank	57_37b	+1	reviewed	missense	c.901	p.K301E	0.999	superfamily_PAZ domain,HMMPfam_PAZ	superfamily_PAZ domain,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi	-	no_errors	
PJA1	64219	genome.wustl.edu	37	X	68382828	68382828	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	68382828	68382828	G	A	SNP	PJA1	NM_145119	human	genbank	57_37b	-1	validated	missense	c.254	p.S85L	0.009	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors	
PKP1	5317	genome.wustl.edu	37	1	201282534	201282535	+	Missense_Mutation	DNP	CG	CG	TA	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	CG	CG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	201282534	201282535	CG	TA	SNP	PKP1	NM_000299	human	genbank	57_37b	+1	reviewed	missense	c.547-c.548	p.R183C-p.R183H	1.000	NULL	superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	-		
PLD1	5337	genome.wustl.edu	37	3	171431831	171431831	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	171431831	171431831	A	G	SNP	PLD1	NM_002662	human	genbank	57_37b	-1	validated	silent	c.763	p.L255	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Phospholipase D/nuclease,HMMPfam_PLDc,HMMSmart_SM00155	-	no_errors	
PLXNB2	23654	genome.wustl.edu	37	22	50727190	50727190	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50727190	50727190	G	A	SNP	PLXNB2	NM_012401	human	genbank	57_37b	-1	validated	silent	c.1362	p.Y454	0.997	superfamily_Sema	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_Ig_E-set,HMMSmart_IPT,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_Rho_GAP	-	no_errors	
POLA1	5422	genome.wustl.edu	37	X	24830822	24830822	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	24830822	24830822	T	C	SNP	POLA1	NM_016937	human	genbank	57_37b	+1	validated	silent	c.3120	p.I1040	0.983	superfamily_SSF56672,HMMPfam_DNA_pol_B	superfamily_RNaseH_fold,HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_SSF56672,HMMPfam_DNA_pol_B,PatternScan_DNA_POLYMERASE_B,HMMPfam_zf-DNA_Pol,superfamily_SSF90234	-	no_errors	
POLE	5426	genome.wustl.edu	37	12	133220438	133220438	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	133220438	133220438	G	A	SNP	POLE	NM_006231	human	genbank	57_37b	-1	validated	silent	c.4275	p.G1425	0.455	NULL	superfamily_RNaseH_fold,HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,HMMPfam_DNA_pol_B,superfamily_SSF56672,HMMPfam_DUF1744	-	no_errors	
POLR2B	5431	genome.wustl.edu	37	4	57896449	57896452	+	Frame_Shift_Del	DEL	TTGT	TTGT	-	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	TTGT	TTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	57896449	57896452	TTGT	-	DEL	POLR2B	NM_000938	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.3319_3322	p.F1108fs	0.436:0.999:1.000:1.000	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_7	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_1,HMMPfam_RNA_pol_Rpb2_2,HMMPfam_RNA_pol_Rpb2_3,HMMPfam_RNA_pol_Rpb2_4,HMMPfam_RNA_pol_Rpb2_5,HMMPfam_RNA_pol_Rpb2_6,PatternScan_RNA_POL_BETA,HMMPfam_RNA_pol_Rpb2_7	(deletion:cds_exon[57896370,57896565])	no_errors	
POTEH	23784	genome.wustl.edu	37	22	16287406	16287406	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	16287406	16287406	G	A	SNP	POTEH	NM_001136213	human	genbank	57_37b	-1	provisional	silent	c.480	p.Y160	0.000	superfamily_ANK	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK	-	no_errors	
PPAP2C	8612	genome.wustl.edu	37	19	287568	287568	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	287568	287568	C	T	SNP	PPAP2C	NM_177543	human	genbank	57_37b	-1	reviewed	missense	c.451	p.V151I	0.992	superfamily_AcPase_VanPerase,HMMPfam_PAP2,HMMSmart_acidPPc	superfamily_AcPase_VanPerase,HMMPfam_PAP2,HMMSmart_acidPPc	-	no_errors	
PPIP5K1	0	genome.wustl.edu	37	15	43831723	43831723	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	43831723	43831723	A	G	SNP	PPIP5K1	NM_001130858	human	genbank	57_37b	-1	validated	silent	c.3444	p.R1148	0.997	NULL	superfamily_Glutathione synthetase ATP-binding domain-like,superfamily_Phosphoglycerate mutase-like,HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_1	-	no_errors	
PRELP	5549	genome.wustl.edu	37	1	203452615	203452615	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	203452615	203452615	G	A	SNP	PRELP	NM_002725	human	genbank	57_37b	+1	reviewed	silent	c.303	p.P101	0.000	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00364	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1	-	no_errors	
PRKD3	23683	genome.wustl.edu	37	2	37507071	37507071	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	37507071	37507071	T	C	SNP	PRKD3	NM_005813	human	genbank	57_37b	-1	reviewed	silent	c.990	p.E330	0.992	NULL	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
PRSS8	5652	genome.wustl.edu	37	16	31143790	31143790	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	31143790	31143790	A	C	SNP	PRSS8	NM_002773	human	genbank	57_37b	-1	reviewed	missense	c.665	p.V222G	1.000	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
PRUNE2	158471	genome.wustl.edu	37	9	79319782	79319782	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	79319782	79319782	G	A	SNP	PRUNE2	NM_015225	human	genbank	57_37b	-1	validated	missense	c.7408	p.P2470S	0.001	NULL	superfamily_SSF64182,superfamily_Ferritin/RR_like,superfamily_CRAL_TRIO_C,HMMSmart_SEC14	-	no_errors	
PTPRF	5792	genome.wustl.edu	37	1	44069494	44069494	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	44069494	44069494	C	T	SNP	PTPRF	NM_002840	human	genbank	57_37b	+1	reviewed	missense	c.2671	p.R891W	1.000	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
QRICH2	84074	genome.wustl.edu	37	17	74278024	74278024	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	74278024	74278024	C	T	SNP	QRICH2	NM_032134	human	genbank	57_37b	-1	provisional	missense	c.3686	p.R1229Q	0.890	NULL	NULL	-	no_errors	
RAB11A	8766	genome.wustl.edu	37	15	66180167	66180167	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	66180167	66180167	C	T	SNP	RAB11A	NM_004663	human	genbank	57_37b	+1	reviewed	nonsense	c.640	p.Q214*	1.000	HMMSmart_SM00176	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,PatternScan_SIGMA54_INTERACT_1,HMMSmart_SM00174,HMMSmart_SM00176	-	no_errors	
RAB2B	84932	genome.wustl.edu	37	14	21944734	21944736	+	In_Frame_Del	DEL	AGG	AGG	-	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	21944734	21944736	AGG	-	DEL	RAB2B	NM_032846	human	genbank	57_37b	-1	validated	in_frame_del	c.71_69	p.L24in_frame_del	1.000:1.000:0.996	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,PatternScan_SIGMA54_INTERACT_1,HMMSmart_SM00174,HMMSmart_SM00176	(deletion:cds_exon[21944687,21944758])	no_errors	
RAD9A	5883	genome.wustl.edu	37	11	67163284	67163286	+	In_Frame_Del	DEL	GAG	GAG	-	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67163284	67163286	GAG	-	DEL	RAD9A	NM_004584	human	genbank	57_37b	+1	reviewed	in_frame_del	c.547_549	p.E185in_frame_del	1.000:1.000:0.998	HMMPfam_Rad9	superfamily_DNA clamp,HMMPfam_Rad9	(deletion:cds_exon[67163187,67163296])	no_errors	
RFX6	222546	genome.wustl.edu	37	6	117248313	117248313	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	117248313	117248313	C	A	SNP	RFX6	NM_173560	human	genbank	57_37b	+1	validated	missense	c.2009	p.P670Q	0.126	NULL	HMMPfam_RFX_DNA_binding,superfamily_SSF46785	-	no_errors	
RHOT1	55288	genome.wustl.edu	37	17	30521111	30521111	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	30521111	30521111	A	G	SNP	RHOT1	NM_001033568	human	genbank	57_37b	+1	validated	missense	c.854	p.E285G	1.000	superfamily_SSF47473,HMMPfam_EF_assoc_2	superfamily_SSF52540,HMMPfam_Miro,superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_EF_assoc_2,HMMPfam_EF_assoc_1	-	no_errors	
RIN2	54453	genome.wustl.edu	37	20	19915793	19915793	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	19915793	19915793	G	A	SNP	RIN2	NM_018993	human	genbank	57_37b	+1	reviewed	silent	c.108	p.V36	1.000	NULL	superfamily_SH2 domain,superfamily_VPS9 domain (Pfam 02204),HMMSmart_SM00167,HMMPfam_VPS9,HMMPfam_RA,HMMSmart_SM00314	-	no_errors	
RNF113B	140432	genome.wustl.edu	37	13	98828674	98828674	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	98828674	98828674	G	A	SNP	RNF113B	NM_178861	human	genbank	57_37b	-1	validated	missense	c.817	p.H273Y	1.000	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	superfamily_SSF90229,HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors	
RPS5	6193	genome.wustl.edu	37	19	58904783	58904783	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	58904783	58904783	A	G	SNP	RPS5	NM_001009	human	genbank	57_37b	+1	reviewed	missense	c.376	p.T126A	0.992	superfamily_Ribosomal protein S7,HMMPfam_Ribosomal_S7	superfamily_Ribosomal protein S7,HMMPfam_Ribosomal_S7,PatternScan_RIBOSOMAL_S7	-	no_errors	
RTTN	25914	genome.wustl.edu	37	18	67698148	67698148	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	67698148	67698148	C	A	SNP	RTTN	NM_173630	human	genbank	57_37b	-1	validated	missense	c.5611	p.A1871S	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors	
RWDD2A	112611	genome.wustl.edu	37	6	83904358	83904358	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	83904358	83904358	T	C	SNP	RWDD2A	NM_033411	human	genbank	57_37b	+1	validated	missense	c.188	p.I63T	1.000	superfamily_UBQ-conjugat/RWD-like,HMMPfam_RWD,HMMSmart_RWD	superfamily_UBQ-conjugat/RWD-like,HMMPfam_RWD,HMMSmart_RWD,HMMPfam_DUF1115	-	no_errors	
SBF1	6305	genome.wustl.edu	37	22	50906253	50906253	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50906253	50906253	C	T	SNP	SBF1	NM_002972	human	genbank	57_37b	-1	validated	missense	c.241	p.A81T	1.000	HMMPfam_uDENN,HMMSmart_SM00800	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
SCN3A	6328	genome.wustl.edu	37	2	165996102	165996102	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	165996102	165996102	G	A	SNP	SCN3A	NM_006922	human	genbank	57_37b	-1	reviewed	missense	c.2036	p.T679M	1.000	NULL	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_IQ,HMMPfam_IQ	-	no_errors	
SEC24B	10427	genome.wustl.edu	37	4	110442315	110442315	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	110442315	110442315	A	G	SNP	SEC24B	NM_006323	human	genbank	57_37b	+1	reviewed	missense	c.2288	p.Y763C	0.995	superfamily_beta-sandwich domain of Sec23/24,HMMPfam_Sec23_trunk,superfamily_vWA-like	PatternScan_MIP,superfamily_beta-sandwich domain of Sec23/24,superfamily_Zn-finger domain of Sec23/24,HMMPfam_zf-Sec23_Sec24,HMMPfam_Sec23_trunk,superfamily_vWA-like,HMMPfam_Sec23_BS,superfamily_Helical domain of Sec23/24,HMMPfam_Sec23_helical,superfamily_C-terminal gelsolin-like domain of Sec23/24,HMMPfam_Gelsolin	-	no_errors	
SEC24D	9871	genome.wustl.edu	37	4	119745855	119745855	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	119745855	119745855	C	T	SNP	SEC24D	NM_014822	human	genbank	57_37b	-1	reviewed	missense	c.168	p.M56I	0.281	NULL	superfamily_beta-sandwich domain of Sec23/24,HMMPfam_zf-Sec23_Sec24,HMMPfam_Sec23_trunk,superfamily_vWA-like,HMMPfam_Sec23_BS,superfamily_Helical domain of Sec23/24,HMMPfam_Sec23_helical,superfamily_C-terminal gelsolin-like domain of Sec23/24,HMMPfam_Gelsolin	-	no_errors	
SH3BGRL	6451	genome.wustl.edu	37	X	80457737	80457737	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	80457737	80457737	C	T	SNP	SH3BGRL	NM_003022	human	genbank	57_37b	+1	validated	missense	c.38	p.S13F	0.988	HMMPfam_SH3BGR,superfamily_Thioredoxin-like	HMMPfam_SH3BGR,superfamily_Thioredoxin-like	-	no_errors	
SHD	56961	genome.wustl.edu	37	19	4280122	4280122	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4280122	4280122	C	A	SNP	SHD	NM_020209	human	genbank	57_37b	+1	validated	missense	c.62	p.P21H	1.000	NULL	superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2	-	no_errors	
SLC18A3	6572	genome.wustl.edu	37	10	50819070	50819070	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	50819070	50819070	C	T	SNP	SLC18A3	NM_003055	human	genbank	57_37b	+1	reviewed	missense	c.284	p.A95V	0.107	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	-	no_errors	
SLC20A2	6575	genome.wustl.edu	37	8	42295045	42295045	+	Missense_Mutation	SNP	C	C	T	rs115961682	by1000genomes	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	42295045	42295045	C	T	SNP	SLC20A2	NM_006749	human	genbank	57_37b	-1	provisional	missense	c.985	p.G329S	1.000	HMMPfam_PHO4	HMMPfam_PHO4	-		
SLC24A1	9187	genome.wustl.edu	37	15	65918176	65918177	+	In_Frame_Ins	INS	-	-	CTG	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	65918176	65918177	-	CTG	INS	SLC24A1	NM_004727	human	genbank	57_37b	+1	validated	in_frame_ins	c.1758_1759	p.590in_frame_insL	1.000:1.000	HMMPfam_Na_Ca_ex	HMMPfam_Na_Ca_ex	-	no_errors	
SLC25A44	9673	genome.wustl.edu	37	1	156180034	156180034	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156180034	156180034	G	A	SNP	SLC25A44	NM_014655	human	genbank	57_37b	+1	validated	missense	c.757	p.E253K	1.000	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors	
SLC27A2	11001	genome.wustl.edu	37	15	50526110	50526110	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	50526110	50526110	A	G	SNP	SLC27A2	NM_003645	human	genbank	57_37b	+1	reviewed	missense	c.1601	p.N534S	0.067	superfamily_Acetyl-CoA synthetase-like	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors	
SLC27A4	10999	genome.wustl.edu	37	9	131115028	131115028	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	131115028	131115028	T	C	SNP	SLC27A4	NM_005094	human	genbank	57_37b	+1	provisional	splice_site	c.987+2	e6+2	1.000	-	-	-	no_errors	
SLC2A9	56606	genome.wustl.edu	37	4	9828107	9828107	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	9828107	9828107	C	T	SNP	SLC2A9	NM_020041	human	genbank	57_37b	-1	reviewed	missense	c.1537	p.A513T	0.979	HMMPfam_Sugar_tr	superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1	-	no_errors	
SLC30A9	10463	genome.wustl.edu	37	4	42065022	42065022	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	42065022	42065022	C	T	SNP	SLC30A9	NM_006345	human	genbank	57_37b	+1	validated	missense	c.916	p.R306C	1.000	HMMPfam_Cation_efflux	superfamily_Putative DNA-binding domain,HMMPfam_Cation_efflux	-	no_errors	
SLC34A2	10568	genome.wustl.edu	37	4	25675985	25675985	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	25675985	25675985	C	A	SNP	SLC34A2	NM_006424	human	genbank	57_37b	+1	validated	missense	c.1284	p.F428L	1.000	HMMPfam_Na_Pi_cotrans	HMMPfam_Na_Pi_cotrans	-	no_errors	
SLC39A9	55334	genome.wustl.edu	37	14	69908917	69908917	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	69908917	69908917	G	A	SNP	SLC39A9	NM_018375	human	genbank	57_37b	+1	validated	missense	c.337	p.V113I	0.998	HMMPfam_Zip	HMMPfam_Zip	-	no_errors	
SLCO1B1	10599	genome.wustl.edu	37	12	21377736	21377736	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	21377736	21377736	C	T	SNP	SLCO1B1	NM_006446	human	genbank	57_37b	+1	reviewed	missense	c.1828	p.R610C	0.010	superfamily_MFS general substrate transporter,HMMPfam_OATP	superfamily_MFS general substrate transporter,HMMPfam_OATP,superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2	-	no_errors	
SLTM	79811	genome.wustl.edu	37	15	59182525	59182526	+	Frame_Shift_Del	DEL	TC	TC	-	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	59182525	59182526	TC	-	DEL	SLTM	NM_024755	human	genbank	57_37b	-1	validated	frame_shift_del	c.2034_2033	p.R678fs	0.999:1.000	NULL	superfamily_SSF68906,HMMPfam_SAP,HMMSmart_SAP,superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	(deletion:cds_exon[59182480,59182660])	no_errors	
SMC4	10051	genome.wustl.edu	37	3	160131390	160131390	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	160131390	160131390	A	G	SNP	SMC4	NM_001002800	human	genbank	57_37b	+1	validated	silent	c.1110	p.K370	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N,superfamily_Prefoldin,superfamily_Smc hinge domain,HMMPfam_SMC_hinge	-	no_errors	
SORBS1	10580	genome.wustl.edu	37	10	97170460	97170460	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	97170460	97170460	G	A	SNP	SORBS1	NM_001034954	human	genbank	57_37b	-1	validated	silent	c.885	p.S295	1.000	NULL	HMMPfam_Sorb,HMMSmart_SM00459,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
SPDYC	387778	genome.wustl.edu	37	11	64938932	64938932	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64938932	64938932	G	A	SNP	SPDYC	NM_001008778	human	genbank	57_37b	+1	provisional	missense	c.161	p.R54H	0.000	NULL	NULL	-	no_errors	
SQSTM1	8878	genome.wustl.edu	37	5	179260660	179260660	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	179260660	179260660	C	T	SNP	SQSTM1	NM_003900	human	genbank	57_37b	+1	reviewed	missense	c.1043	p.P348L	1.000	NULL	HMMSmart_SM00666,HMMPfam_PB1,superfamily_CAD  PB1 domains,HMMSmart_SM00291,HMMPfam_ZZ,PatternScan_ZF_ZZ_1,superfamily_UBA-like,HMMSmart_SM00165	-	no_errors	
STUB1	10273	genome.wustl.edu	37	16	731505	731507	+	In_Frame_Del	DEL	GAA	GAA	-	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	731505	731507	GAA	-	DEL	STUB1	NM_005861	human	genbank	57_37b	+1	validated	in_frame_del	c.426_428	p.K145in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like,superfamily_RING/U-box,HMMPfam_U-box,HMMSmart_SM00504	(deletion:cds_exon[731438,731603])	no_errors	
SUPT6H	6830	genome.wustl.edu	37	17	27027201	27027202	+	In_Frame_Ins	INS	-	-	AGC	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	27027201	27027202	-	AGC	INS	SUPT6H	NM_003170	human	genbank	57_37b	+1	validated	in_frame_ins	c.4572_4573	p.1528in_frame_insS	1.000:1.000	NULL	HMMPfam_Tex_N,HMMSmart_SM00732,superfamily_Nucleic acid-binding proteins,HMMSmart_SM00316,HMMPfam_S1,superfamily_SH2 domain,HMMSmart_SM00252	-	no_errors	
TACC2	10579	genome.wustl.edu	37	10	123844494	123844494	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	123844494	123844494	G	C	SNP	TACC2	NM_206862	human	genbank	57_37b	+1	reviewed	missense	c.2479	p.E827Q	0.000	NULL	HMMPfam_TACC	-	no_errors	
TBC1D10C	374403	genome.wustl.edu	37	11	67171808	67171808	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67171808	67171808	C	T	SNP	TBC1D10C	NM_198517	human	genbank	57_37b	+1	provisional	silent	c.135	p.G45	0.999	NULL	superfamily_RabGAP_TBC,HMMSmart_TBC,HMMPfam_TBC	-	no_errors	
TBC1D21	161514	genome.wustl.edu	37	15	74177124	74177124	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	74177124	74177124	C	T	SNP	TBC1D21	NM_153356	human	genbank	57_37b	+1	provisional	missense	c.370	p.R124C	0.003	superfamily_RabGAP_TBC,HMMSmart_TBC	superfamily_RabGAP_TBC,HMMSmart_TBC	-	no_errors	
TBCD	6904	genome.wustl.edu	37	17	80895232	80895232	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	80895232	80895232	G	A	SNP	TBCD	NM_005993	human	genbank	57_37b	+1	reviewed	missense	c.3277	p.A1093T	0.003	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
TDP1	55775	genome.wustl.edu	37	14	90429977	90429977	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	90429977	90429977	A	G	SNP	TDP1	NM_001008744	human	genbank	57_37b	+1	reviewed	silent	c.519	p.G173	0.981	superfamily_SSF56024,HMMPfam_Tyr-DNA_phospho	superfamily_SSF56024,HMMPfam_Tyr-DNA_phospho	-	no_errors	
THBS1	7057	genome.wustl.edu	37	15	39885373	39885373	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	39885373	39885373	C	T	SNP	THBS1	NM_003246	human	genbank	57_37b	+1	reviewed	silent	c.2940	p.R980	0.977	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_TSP_C	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2,superfamily_TSP type-3 repeat,HMMPfam_TSP_3,HMMPfam_TSP_C	-	no_errors	
TIGD5	84948	genome.wustl.edu	37	8	144681777	144681777	+	Missense_Mutation	SNP	G	G	T	rs10282929	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144681777	144681777	G	T	SNP	TIGD5	NM_032862	human	genbank	57_37b	+1	validated	missense	c.1557	p.M519I	0.006	NULL	superfamily_Homeodomain-like,HMMPfam_CENP-B_N,HMMPfam_CenpB-DNA-bind,HMMSmart_SM00674,HMMPfam_DDE	-		
TIRAP	114609	genome.wustl.edu	37	11	126162826	126162826	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	126162826	126162826	C	T	SNP	TIRAP	NM_148910	human	genbank	57_37b	+1	reviewed	silent	c.522	p.C174	1.000	superfamily_Toll/Interleukin receptor TIR domain	superfamily_Toll/Interleukin receptor TIR domain	-	no_errors	
TM2D3	80213	genome.wustl.edu	37	15	102182699	102182699	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	102182699	102182699	C	A	SNP	TM2D3	NM_078474	human	genbank	57_37b	-1	reviewed	missense	c.727	p.G243C	1.000	NULL	HMMPfam_TM2	-	no_errors	
TMEM74	157753	genome.wustl.edu	37	8	109796495	109796495	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	109796495	109796495	A	G	SNP	TMEM74	NM_153015	human	genbank	57_37b	-1	provisional	missense	c.833	p.F278S	1.000	NULL	NULL	-	no_errors	
TMPRSS11F	389208	genome.wustl.edu	37	4	68925078	68925078	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	68925078	68925078	G	A	SNP	TMPRSS11F	NM_207407	human	genbank	57_37b	-1	validated	missense	c.1124	p.A375V	1.000	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	superfamily_SSF82671,HMMSmart_SEA,HMMPfam_SEA,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
TOP3B	8940	genome.wustl.edu	37	22	22326278	22326278	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	22326278	22326278	C	T	SNP	TOP3B	NM_003935	human	genbank	57_37b	-1	reviewed	missense	c.355	p.D119N	1.000	HMMSmart_SM00493,HMMPfam_Toprim,superfamily_Prokaryotic type I DNA topoisomerase	HMMSmart_SM00493,HMMPfam_Toprim,superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00436,HMMPfam_Topoisom_bac,HMMSmart_SM00437,PatternScan_TOPOISOMERASE_I_PROK	-	no_errors	
TPO	7173	genome.wustl.edu	37	2	1440158	1440158	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	1440158	1440158	T	C	SNP	TPO	NM_000547	human	genbank	57_37b	+1	reviewed	splice_site	c.482+2	e4+2	0.997	-	-	-	no_errors	
TRAF7	84231	genome.wustl.edu	37	16	2220730	2220730	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2220730	2220730	C	T	SNP	TRAF7	NM_032271	human	genbank	57_37b	+1	validated	missense	c.347	p.P116L	1.000	superfamily_RING/U-box	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_TRAF domain-like,HMMPfam_zf-TRAF,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
TRIM32	22954	genome.wustl.edu	37	9	119460577	119460577	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	119460577	119460577	C	T	SNP	TRIM32	NM_001099679	human	genbank	57_37b	+1	reviewed	nonsense	c.556	p.Q186*	1.000	NULL	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMSmart_BBOX,superfamily_SSF101898,HMMPfam_NHL	-	no_errors	
TRIM50	135892	genome.wustl.edu	37	7	72730631	72730632	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	72730631	72730632	-	T	INS	TRIM50	NM_178125	human	genbank	57_37b	-1	provisional	frame_shift_ins	c.807_806	p.P270fs	1.000:1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors	
TRO	7216	genome.wustl.edu	37	X	54956207	54956207	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	54956207	54956207	T	C	SNP	TRO	NM_001039705	human	genbank	57_37b	+1	reviewed	missense	c.3050	p.V1017A	0.000	NULL	HMMPfam_MAGE	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179430671	179430671	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179430671	179430671	A	G	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.72478	p.Y24160H	0.999	HMMSmart_SM00060,HMMPfam_fn3	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
TUBB4	10382	genome.wustl.edu	37	19	6495769	6495769	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6495769	6495769	G	A	SNP	TUBB4	ENST00000411712	human	ensembl	57_37b	-1	known	splice_site	c.119-2	e3-2	1.000	-	-	-	no_errors	
TXNRD2	10587	genome.wustl.edu	37	22	19903309	19903309	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	19903309	19903309	G	A	SNP	TXNRD2	ENST00000334361	human	ensembl	57_37b	-1	known	silent	c.507	p.G169	0.000	superfamily_FAD/NAD(P)-binding domain,HMMPfam_Pyr_redox_2	superfamily_FAD/NAD(P)-binding domain,HMMPfam_Pyr_redox_2,PatternScan_PYRIDINE_REDOX_1,superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain,HMMPfam_Pyr_redox_dim	-	no_errors	
UBE3C	9690	genome.wustl.edu	37	7	157009636	157009636	+	Missense_Mutation	SNP	T	T	C	rs78274219	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	157009636	157009636	T	C	SNP	UBE3C	NM_014671	human	genbank	57_37b	+1	validated	missense	c.1885	p.S629P	1.000	NULL	HMMSmart_SM00015,HMMPfam_IQ,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-		
UGT2B4	7363	genome.wustl.edu	37	4	70350946	70350946	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	70350946	70350946	C	T	SNP	UGT2B4	NM_021139	human	genbank	57_37b	-1	validated	silent	c.1290	p.K430	0.211	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors	
UGT3A1	133688	genome.wustl.edu	37	5	35955790	35955790	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	35955790	35955790	C	T	SNP	UGT3A1	NM_152404	human	genbank	57_37b	-1	validated	missense	c.1252	p.D418N	0.027	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors	
VPS4A	27183	genome.wustl.edu	37	16	69358203	69358204	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	69358203	69358204	AG	-	DEL	VPS4A	NM_013245	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1305_1306	p.S437fs	1.000:1.000	NULL	HMMSmart_SM00745,HMMPfam_MIT,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,HMMPfam_Vps4_C	(deletion:cds_exon[69358111,69358212])	no_errors	
VPS52	6293	genome.wustl.edu	37	6	33235071	33235071	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	33235071	33235071	C	T	SNP	VPS52	NM_022553	human	genbank	57_37b	-1	reviewed	missense	c.1019	p.S340N	1.000	HMMPfam_Vps52	HMMPfam_Vps52	-	no_errors	
VWA5B2	90113	genome.wustl.edu	37	3	183954187	183954187	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	183954187	183954187	C	T	SNP	VWA5B2	NM_138345	human	genbank	57_37b	+1	provisional	silent	c.1269	p.P423	0.008	superfamily_SSF53300,HMMSmart_VWA	superfamily_SSF53300,HMMSmart_VWA	-	no_errors	
WDR6	11180	genome.wustl.edu	37	3	49049490	49049490	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49049490	49049490	A	G	SNP	WDR6	NM_018031	human	genbank	57_37b	+1	reviewed	missense	c.613	p.I205V	0.765	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
WDR72	256764	genome.wustl.edu	37	15	54025194	54025194	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	54025194	54025194	C	T	SNP	WDR72	NM_182758	human	genbank	57_37b	-1	validated	silent	c.153	p.K51	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
WFS1	7466	genome.wustl.edu	37	4	6304087	6304087	+	Silent	SNP	A	G	G	rs1046316	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	6304087	6304087	A	G	SNP	WFS1	NM_006005	human	genbank	57_37b	+1	reviewed	silent	c.2565	p.S855	0.000	NULL	NULL	-		
WISP1	8840	genome.wustl.edu	37	8	134237699	134237699	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	134237699	134237699	G	A	SNP	WISP1	NM_003882	human	genbank	57_37b	+1	reviewed	missense	c.677	p.C226Y	1.000	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	HMMSmart_SM00121,HMMPfam_IGFBP,PatternScan_IGFBP_N_1,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_Cys_knot,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors	
XPO7	23039	genome.wustl.edu	37	8	21844747	21844747	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	21844747	21844747	G	A	SNP	XPO7	NM_001100161	human	genbank	57_37b	+1	validated	missense	c.1700	p.R567H	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_IBN_N	-	no_errors	
ZC4H2	55906	genome.wustl.edu	37	X	64137672	64137672	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	64137672	64137672	C	T	SNP	ZC4H2	ENST00000447788	human	ensembl	57_37b	-1	known	missense	c.482	p.R161K	0.508	HMMPfam_zf-C4H2	HMMPfam_zf-C4H2	-	no_errors	
ZCCHC6	79670	genome.wustl.edu	37	9	88938113	88938113	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	88938113	88938113	T	C	SNP	ZCCHC6	NM_024617	human	genbank	57_37b	-1	validated	missense	c.2552	p.D851G	0.871	NULL	HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain,HMMPfam_PAP_assoc,HMMPfam_zf-CCHC,HMMSmart_SM00343,HMMPfam_NTP_transf_2,superfamily_Retrovirus zinc finger-like domains	-	no_errors	
ZNF282	8427	genome.wustl.edu	37	7	148921569	148921569	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	148921569	148921569	A	G	SNP	ZNF282	NM_003575	human	genbank	57_37b	+1	validated	missense	c.1846	p.N616D	0.957	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF362	149076	genome.wustl.edu	37	1	33745989	33745989	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	33745989	33745989	C	T	SNP	ZNF362	NM_152493	human	genbank	57_37b	+1	validated	missense	c.614	p.P205L	0.994	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF645	158506	genome.wustl.edu	37	X	22292144	22292144	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	22292144	22292144	C	T	SNP	ZNF645	NM_152577	human	genbank	57_37b	+1	provisional	nonsense	c.1036	p.Q346*	0.910	NULL	PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57850,HMMSmart_RING,PatternScan_ZF_RING_1,HMMSmart_ZnF_C2H2	-	no_errors	
ZNF785	146540	genome.wustl.edu	37	16	30594700	30594700	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	30594700	30594700	C	T	SNP	ZNF785	NM_152458	human	genbank	57_37b	-1	provisional	silent	c.399	p.A133	0.000	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF786	136051	genome.wustl.edu	37	7	148769157	148769157	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HA-01A-11D-A12Q-09	TCGA-BH-A0HA-11A-31D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	148769157	148769157	A	G	SNP	ZNF786	NM_152411	human	genbank	57_37b	-1	validated	missense	c.707	p.V236A	0.000	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
