Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACVR2A	92	genome.wustl.edu	37	2	148657378	148657378	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	148657378	148657378	C	G	SNP	ACVR2A	NM_001616	human	genbank	57_37b	+1	reviewed	missense	c.439	p.L147V	1.000	NULL	superfamily_Snake toxin-like,HMMPfam_Activin_recp,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
APOA4	337	genome.wustl.edu	37	11	116692402	116692402	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	116692402	116692402	G	A	SNP	APOA4	NM_000482	human	genbank	57_37b	-1	reviewed	silent	c.372	p.I124	0.114	superfamily_Apolipoprotein,HMMPfam_Apolipoprotein	superfamily_Apolipoprotein,HMMPfam_Apolipoprotein	-	no_errors	
ARHGAP24	83478	genome.wustl.edu	37	4	86898785	86898785	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	86898785	86898785	C	T	SNP	ARHGAP24	NM_001025616	human	genbank	57_37b	+1	validated	missense	c.869	p.T290M	1.000	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
ATF5	22809	genome.wustl.edu	37	19	50435862	50435862	+	Missense_Mutation	SNP	C	C	T	rs283526	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50435862	50435862	C	T	SNP	ATF5	NM_012068	human	genbank	57_37b	+1	validated	missense	c.362	p.P121L	0.996	NULL	HMMPfam_bZIP_1,HMMSmart_BRLZ	-		
CCNJL	79616	genome.wustl.edu	37	5	159686723	159686723	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	159686723	159686723	C	T	SNP	CCNJL	NM_024565	human	genbank	57_37b	-1	validated	silent	c.480	p.T160	0.578	HMMPfam_Cyclin_N,superfamily_Cyclin-like,HMMSmart_SM00385	HMMPfam_Cyclin_N,superfamily_Cyclin-like,HMMSmart_SM00385,HMMPfam_Cyclin_C,PatternScan_PENTAXIN	-	no_errors	
CDS1	1040	genome.wustl.edu	37	4	85540676	85540676	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	85540676	85540676	C	T	SNP	CDS1	NM_001263	human	genbank	57_37b	+1	reviewed	silent	c.570	p.L190	1.000	HMMPfam_CTP_transf_1	HMMPfam_CTP_transf_1,PatternScan_CDS	-	no_errors	
CHEK2	11200	genome.wustl.edu	37	22	29092948	29092948	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	29092948	29092948	G	A	SNP	CHEK2	NM_001005735	human	genbank	57_37b	-1	reviewed	missense	c.1165	p.R389C	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
CLCNKB	1188	genome.wustl.edu	37	1	16376146	16376146	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16376146	16376146	G	A	SNP	CLCNKB	NM_000085	human	genbank	57_37b	+1	reviewed	missense	c.815	p.R272Q	0.024	superfamily_Clc chloride channel,HMMPfam_Voltage_CLC	superfamily_Clc chloride channel,HMMPfam_Voltage_CLC,superfamily_CBS-domain,HMMPfam_CBS,HMMSmart_SM00116	-	no_errors	
DOCK2	1794	genome.wustl.edu	37	5	169477280	169477280	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	169477280	169477280	C	T	SNP	DOCK2	NM_004946	human	genbank	57_37b	+1	validated	silent	c.4092	p.R1364	0.397	NULL	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_Cytochrome c	-	no_errors	
EFCAB5	374786	genome.wustl.edu	37	17	28381157	28381157	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	28381157	28381157	C	T	SNP	EFCAB5	NM_198529	human	genbank	57_37b	+1	validated	missense	c.2185	p.H729Y	0.000	superfamily_EF-hand	superfamily_EF-hand,PatternScan_EF_HAND_1	-	no_errors	
ENSG00000215976	0	genome.wustl.edu	37	12	104378940	104378941	+	RNA	INS	-	-	ACAT	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	104378940	104378941	-	ACAT	INS	ENSG00000215976	ENST00000401157	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.008:0.012	-	-	-	no_errors	
FBXO18	84893	genome.wustl.edu	37	10	5963220	5963220	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	5963220	5963220	G	T	SNP	FBXO18	NM_032807	human	genbank	57_37b	+1	reviewed	splice_site	c.2254-1	e15-1	1.000	-	-	-	no_errors	
FEM1B	10116	genome.wustl.edu	37	15	68582349	68582349	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	68582349	68582349	A	T	SNP	FEM1B	NM_015322	human	genbank	57_37b	+1	provisional	missense	c.653	p.H218L	1.000	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors	
IFNA14	3448	genome.wustl.edu	37	9	21239924	21239924	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	21239924	21239924	G	A	SNP	IFNA14	NM_002172	human	genbank	57_37b	-1	validated	missense	c.11	p.P4L	0.000	HMMPfam_Interferon	HMMPfam_Interferon,superfamily_4_helix_cytokine,HMMSmart_IFabd,PatternScan_INTERFERON_A_B_D	-	no_errors	
IQGAP3	128239	genome.wustl.edu	37	1	156499969	156499969	+	Silent	SNP	T	T	C	rs1171566	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156499969	156499969	T	C	SNP	IQGAP3	NM_178229	human	genbank	57_37b	-1	validated	silent	c.4332	p.L1444	1.000	HMMPfam_RasGAP_C	superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH,HMMSmart_IQ,superfamily_SSF52540,HMMPfam_IQ,superfamily_Rho_GAP,HMMSmart_RasGAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMPfam_RasGAP_C	-		
L3MBTL	26013	genome.wustl.edu	37	20	42169439	42169439	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	42169439	42169439	G	A	SNP	L3MBTL	NM_015478	human	genbank	57_37b	+1	reviewed	missense	c.2108	p.R703H	0.988	NULL	superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT,superfamily_CCHHC domain,HMMPfam_zf-C2HC	-	no_errors	
LDB2	9079	genome.wustl.edu	37	4	16504398	16504398	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	16504398	16504398	C	T	SNP	LDB2	NM_001290	human	genbank	57_37b	-1	validated	silent	c.990	p.A330	1.000	HMMPfam_LIM_bind	HMMPfam_LIM_bind	-	no_errors	
LEPR	3953	genome.wustl.edu	37	1	66083718	66083718	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	66083718	66083718	C	-	DEL	LEPR	NM_002303	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2284	p.S763fs	0.367	PatternScan_HEMATOPO_REC_L_F2,superfamily_Fibronectin type III,HMMSmart_SM00060	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_HEMATOPO_REC_S_F1,HMMPfam_Lep_receptor_Ig,PatternScan_HEMATOPO_REC_L_F2	(deletion:cds_exon[66083647,66083829])	no_errors	
LOC100131539	0	genome.wustl.edu	37	11	71530725	71530725	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	71530725	71530725	C	T	SNP	LOC100131539	XM_001723234	human	genbank	57_37b	-1	model	silent	c.105	p.V35	0.942	HMMPfam_KRAB,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349	HMMPfam_KRAB,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
LOC100288750	0	genome.wustl.edu	37	10	42608914	42608914	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	42608914	42608914	C	A	SNP	LOC100288750	XM_002342981	human	genbank	57_37b	-1	model	silent	c.108	p.P36	0.210	NULL	NULL	-	no_errors	
LOC399965	399965	genome.wustl.edu	37	11	124984488	124984488	+	RNA	SNP	C	T	T	rs669949	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	124984488	124984488	C	T	SNP	LOC399965	XR_016979	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.287	-	-	-		
LRBA	987	genome.wustl.edu	37	4	151412073	151412073	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	151412073	151412073	T	A	SNP	LRBA	NM_006726	human	genbank	57_37b	-1	validated	nonsense	c.6478	p.R2160*	1.000	superfamily_PH domain-like	superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
LRIG3	121227	genome.wustl.edu	37	12	59271349	59271349	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	59271349	59271349	C	T	SNP	LRIG3	NM_153377	human	genbank	57_37b	-1	provisional	missense	c.2369	p.C790Y	1.000	NULL	superfamily_RNI-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRCT,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	-	no_errors	
LRRC30	339291	genome.wustl.edu	37	18	7231362	7231362	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	7231362	7231362	C	G	SNP	LRRC30	NM_001105581	human	genbank	57_37b	+1	provisional	missense	c.226	p.L76V	1.000	superfamily_SSF52058,HMMPfam_LRR_1	superfamily_SSF52058,HMMPfam_LRR_1	-	no_errors	
METRNL	284207	genome.wustl.edu	37	17	81052054	81052054	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	81052054	81052054	G	A	SNP	METRNL	NM_001004431	human	genbank	57_37b	+1	provisional	missense	c.670	p.A224T	0.436	NULL	NULL	-	no_errors	
MMP13	4322	genome.wustl.edu	37	11	102826428	102826428	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	102826428	102826428	G	T	SNP	MMP13	NM_002427	human	genbank	57_37b	-1	reviewed	missense	c.7	p.P3T	0.000	NULL	HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_CYSTEINE_SWITCH,HMMSmart_ZnMc,superfamily_SSF55486,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX,PatternScan_HEMOPEXIN	-	no_errors	
MYCL1	4610	genome.wustl.edu	37	1	40363231	40363231	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	40363231	40363231	G	A	SNP	MYCL1	NM_001033081	human	genbank	57_37b	-1	validated	missense	c.908	p.A303V	1.000	HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353	HMMPfam_Myc_N,HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353	-	no_errors	
NR3C2	4306	genome.wustl.edu	37	4	149357669	149357669	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	149357669	149357669	G	A	SNP	NR3C2	NM_000901	human	genbank	57_37b	-1	reviewed	missense	c.344	p.A115V	1.000	NULL	HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors	
NUPL1	9818	genome.wustl.edu	37	13	25905699	25905699	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	25905699	25905699	C	T	SNP	NUPL1	ENST00000463407	human	ensembl	57_37b	+1	known	silent	c.1438	p.L480	1.000	NULL	NULL	-	no_errors	
OBSCN	84033	genome.wustl.edu	37	1	228547901	228547901	+	Silent	SNP	C	C	T	rs12035900	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228547901	228547901	C	T	SNP	OBSCN	NM_052843	human	genbank	57_37b	+1	reviewed	silent	c.19308	p.D6436	0.000	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,PatternScan_AA_TRNA_LIGASE_I	-		
PDE4DIP	9659	genome.wustl.edu	37	1	144879284	144879284	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	144879284	144879284	G	A	SNP	PDE4DIP	NM_014644	human	genbank	57_37b	-1	validated	missense	c.4166	p.S1389L	1.000	NULL	HMMPfam_Microtub_assoc	-	no_errors	
PDIA3	2923	genome.wustl.edu	37	15	44038899	44038899	+	Silent	SNP	C	C	T	rs2411284	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	44038899	44038899	C	T	SNP	PDIA3	NM_005313	human	genbank	57_37b	+1	reviewed	silent	c.162	p.A54	0.972	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1	-		
PRKCB	5579	genome.wustl.edu	37	16	24192242	24192242	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	24192242	24192242	C	T	SNP	PRKCB	NM_002738	human	genbank	57_37b	+1	reviewed	missense	c.1526	p.A509V	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-	no_errors	
SEC31B	25956	genome.wustl.edu	37	10	102247408	102247408	+	Missense_Mutation	SNP	C	C	A	rs2298075	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	102247408	102247408	C	A	SNP	SEC31B	NM_015490	human	genbank	57_37b	-1	reviewed	missense	c.3505	p.A1169S	0.996	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-		
SPHKAP	80309	genome.wustl.edu	37	2	228996728	228996728	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	228996728	228996728	C	T	SNP	SPHKAP	NM_001142644	human	genbank	57_37b	-1	validated	missense	c.106	p.G36S	0.129	NULL	HMMPfam_AKAP_110	-	no_errors	
ST6GAL2	84620	genome.wustl.edu	37	2	107459975	107459975	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	107459975	107459975	G	A	SNP	ST6GAL2	NM_001142351	human	genbank	57_37b	-1	validated	silent	c.459	p.P153	0.000	NULL	HMMPfam_Glyco_transf_29,superfamily_Glycoside hydrolase/deacetylase	-	no_errors	
TAF1L	138474	genome.wustl.edu	37	9	32634836	32634836	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	32634836	32634836	C	T	SNP	TAF1L	NM_153809	human	genbank	57_37b	-1	provisional	missense	c.742	p.E248K	1.000	NULL	HMMPfam_TBP-binding,superfamily_TAF_II_230,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
VEZF1	7716	genome.wustl.edu	37	17	56060288	56060288	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56060288	56060288	C	G	SNP	VEZF1	NM_007146	human	genbank	57_37b	-1	validated	missense	c.500	p.S167T	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
WASH2P	375260	genome.wustl.edu	37	2	114355998	114355998	+	RNA	SNP	C	G	G	rs17857355	byFrequency	TCGA-BH-A0HB-01A-11W-A071-09	TCGA-BH-A0HB-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	114355998	114355998	C	G	SNP	WASH2P	NR_024077	human	genbank	57_37b	+1	validated	rna	NULL	NULL	1.000	-	-	-		
