Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ARID1A	8289	genome.wustl.edu	37	1	27087880	27087880	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	27087880	27087880	C	T	SNP	ARID1A	NM_006015	human	genbank	57_37b	+1	reviewed	nonsense	c.2167	p.Q723*	1.000	NULL	superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501	-	no_errors	
CAPRIN1	4076	genome.wustl.edu	37	11	34093289	34093289	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	34093289	34093289	A	G	SNP	CAPRIN1	NM_005898	human	genbank	57_37b	+1	validated	missense	c.233	p.Y78C	1.000	NULL	NULL	-	no_errors	
CATSPERG	57828	genome.wustl.edu	37	19	38861256	38861256	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38861256	38861256	C	T	SNP	CATSPERG	NM_021185	human	genbank	57_37b	+1	validated	missense	c.3304	p.R1102W	0.423	NULL	NULL	-	no_errors	
CEP55	55165	genome.wustl.edu	37	10	95287850	95287851	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	95287850	95287851	-	C	INS	CEP55	NM_001127182	human	genbank	57_37b	+1	validated	frame_shift_ins	c.1335_1336	p.Q445fs	0.000:0.969	NULL	NULL	-	no_errors	
CNOT8	9337	genome.wustl.edu	37	5	154254920	154254920	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	154254920	154254920	C	T	SNP	CNOT8	NM_004779	human	genbank	57_37b	+1	provisional	missense	c.800	p.A267V	1.000	NULL	superfamily_Ribonuclease H-like,HMMPfam_CAF1	-	no_errors	
CNTN4	152330	genome.wustl.edu	37	3	2787338	2787338	+	Silent	SNP	G	G	C	rs116041691	by1000genomes	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	2787338	2787338	G	C	SNP	CNTN4	NM_175607	human	genbank	57_37b	+1	reviewed	silent	c.315	p.S105	0.004	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-		
CRTC2	200186	genome.wustl.edu	37	1	153925831	153925831	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	153925831	153925831	G	C	SNP	CRTC2	NM_181715	human	genbank	57_37b	-1	provisional	missense	c.518	p.S173C	1.000	NULL	NULL	-	no_errors	
DNAJC22	79962	genome.wustl.edu	37	12	49742746	49742746	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	49742746	49742746	G	A	SNP	DNAJC22	NM_024902	human	genbank	57_37b	+1	provisional	missense	c.91	p.A31T	1.000	NULL	PatternScan_DNAJ_1,superfamily_DnaJ_N,HMMSmart_DnaJ,HMMPfam_DnaJ	-	no_errors	
ELAVL1	1994	genome.wustl.edu	37	19	8056669	8056669	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	8056669	8056669	C	T	SNP	ELAVL1	NM_001419	human	genbank	57_37b	-1	reviewed	missense	c.31	p.E11K	0.999	superfamily_RNA-binding domain RBD	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors	
ENSG00000204038	0	genome.wustl.edu	37	10	82013119	82013119	+	Missense_Mutation	SNP	G	G	A	rs12411806	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	82013119	82013119	G	A	SNP	ENSG00000204038	ENST00000356374	human	ensembl	57_37b	+1	known	missense	c.637	p.G213S	0.050	NULL	NULL	-		
ENSG00000244797	0	genome.wustl.edu	37	17	74671008	74671008	+	RNA	SNP	C	T	T	rs9897324	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	74671008	74671008	C	T	SNP	ENSG00000244797	ENST00000501808	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.001	-	-	-		
ENSG00000245883	0	genome.wustl.edu	37	7	99521249	99521249	+	RNA	SNP	A	A	G	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99521249	99521249	A	G	SNP	ENSG00000245883	ENST00000499990	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.600	-	-	-	no_errors	
ENSG00000247516	0	genome.wustl.edu	37	5	8462395	8462395	+	RNA	SNP	G	A	A	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	8462395	8462395	G	A	SNP	ENSG00000247516	ENST00000502001	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	
ENSG00000247798	0	genome.wustl.edu	37	15	34657704	34657704	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	34657704	34657704	C	T	SNP	ENSG00000247798	ENST00000499945	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	
ENSG00000247820	0	genome.wustl.edu	37	13	79890604	79890604	+	RNA	SNP	T	G	G	rs12865187	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	79890604	79890604	T	G	SNP	ENSG00000247820	ENST00000499720	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.451	-	-	-		
EOMES	8320	genome.wustl.edu	37	3	27761733	27761733	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	27761733	27761733	G	A	SNP	EOMES	NM_005442	human	genbank	57_37b	-1	reviewed	missense	c.965	p.A322V	0.999	HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,HMMPfam_T-box	HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	-	no_errors	
FAM63A	55793	genome.wustl.edu	37	1	150973769	150973769	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150973769	150973769	T	A	SNP	FAM63A	NM_018379	human	genbank	57_37b	-1	validated	missense	c.533	p.K178M	1.000	HMMPfam_DUF544	HMMPfam_DUF544	-	no_errors	
FGF23	8074	genome.wustl.edu	37	12	4479710	4479710	+	Silent	SNP	C	C	T	rs115283398	by1000genomes	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	4479710	4479710	C	T	SNP	FGF23	NM_020638	human	genbank	57_37b	-1	reviewed	silent	c.555	p.S185	0.000	NULL	PatternScan_HBGF_FGF,superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF	-		
FOLH1	2346	genome.wustl.edu	37	11	49192781	49192781	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	49192781	49192781	T	A	SNP	FOLH1	NM_004476	human	genbank	57_37b	-1	reviewed	missense	c.1274	p.E425V	1.000	superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M28	superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M28,superfamily_Transferrin receptor ectodomain C-terminal domain,HMMPfam_TFR_dimer	-	no_errors	
GABBR2	9568	genome.wustl.edu	37	9	101052989	101052989	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	101052989	101052989	G	A	SNP	GABBR2	NM_005458	human	genbank	57_37b	-1	reviewed	silent	c.2703	p.H901	1.000	NULL	PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,superfamily_SSF53822,HMMPfam_ANF_receptor,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors	
GDF6	392255	genome.wustl.edu	37	8	97172770	97172770	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	97172770	97172770	T	A	SNP	GDF6	NM_001001557	human	genbank	57_37b	-1	reviewed	missense	c.151	p.M51L	1.000	NULL	HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-	no_errors	
IFNB1	3456	genome.wustl.edu	37	9	21077643	21077643	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	21077643	21077643	C	T	SNP	IFNB1	NM_002176	human	genbank	57_37b	-1	validated	missense	c.226	p.A76T	0.000	HMMPfam_Interferon,superfamily_4-helical cytokines,HMMSmart_SM00076	HMMPfam_Interferon,superfamily_4-helical cytokines,HMMSmart_SM00076,PatternScan_INTERFERON_A_B_D	-	no_errors	
KHK	3795	genome.wustl.edu	37	2	27320451	27320451	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	27320451	27320451	C	-	DEL	KHK	NM_000221	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.498	p.R167fs	1.000	superfamily_Ribokinase-like	superfamily_Ribokinase-like,HMMPfam_PfkB	(deletion:cds_exon[27320371,27320517])	no_errors	
KRT81	3887	genome.wustl.edu	37	12	52681780	52681780	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52681780	52681780	C	T	SNP	KRT81	NM_002281	human	genbank	57_37b	-1	reviewed	nonsense	c.888	p.W296*	1.000	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors	
LOC100128827	0	genome.wustl.edu	37	3	197837548	197837548	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	197837548	197837548	G	-	DEL	LOC100128827	XM_002342416	human	genbank	57_37b	+1	model	frame_shift_del	c.212	p.R72fs	0.012	NULL	NULL	(deletion:cds_exon[197837515,197837603])	no_errors	
LOC100288919	0	genome.wustl.edu	37	15	22319295	22319295	+	Missense_Mutation	SNP	T	C	C	rs4779264	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	22319295	22319295	T	C	SNP	LOC100288919	XM_002344245	human	genbank	57_37b	-1	model	missense	c.320	p.Y107C	0.398	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1	-		
LOC100291301	0	genome.wustl.edu	37	16	13572974	13572974	+	Missense_Mutation	SNP	T	C	C	rs7200899	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	13572974	13572974	T	C	SNP	LOC100291301	XM_002347683	human	genbank	57_37b	+1	model	missense	c.503	p.L168S	0.000	NULL	NULL	-		
LOC400352	400352	genome.wustl.edu	37	15	32792075	32792075	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	32792075	32792075	G	-	DEL	LOC400352	XM_002343334	human	genbank	57_37b	-1	model	frame_shift_del	c.141	p.N47fs	0.882	HMMPfam_Mpp10	HMMPfam_Mpp10	(deletion:cds_exon[32791965,32792215])	no_errors	
LOC84740	84740	genome.wustl.edu	37	4	7775099	7775099	+	RNA	SNP	C	T	T	rs16841175	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	7775099	7775099	C	T	SNP	LOC84740	NR_026892	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.001	-	-	-		
LRP3	4037	genome.wustl.edu	37	19	33693784	33693784	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	33693784	33693784	C	T	SNP	LRP3	NM_002333	human	genbank	57_37b	+1	validated	missense	c.152	p.T51M	0.975	superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB	superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1	-	no_errors	
LRP3	4037	genome.wustl.edu	37	19	33695733	33695733	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	33695733	33695733	G	-	DEL	LRP3	NM_002333	human	genbank	57_37b	+1	validated	frame_shift_del	c.450	p.G151fs	1.000	superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB	superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1	(deletion:cds_exon[33695544,33695758])	no_errors	
MDS1	4197	genome.wustl.edu	37	3	168813030	168813030	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	168813030	168813030	G	A	SNP	MDS1	ENST00000494292	human	ensembl	57_37b	-1	known	silent	c.2826	p.C942	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	HMMSmart_SM00317,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
MUC4	4585	genome.wustl.edu	37	3	195512080	195512080	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	195512080	195512080	C	T	SNP	MUC4	NM_018406	human	genbank	57_37b	-1	reviewed	missense	c.6371	p.G2124E	0.407	NULL	HMMSmart_SM00539,HMMPfam_NIDO,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00723,HMMPfam_AMOP,HMMSmart_SM00216,HMMPfam_VWD,PatternScan_EGF_1,HMMSmart_SM00181,superfamily_EGF/Laminin	-	no_errors	
NODAL	4838	genome.wustl.edu	37	10	72195490	72195490	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	72195490	72195490	A	-	DEL	NODAL	NM_018055	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.443	p.L148fs	0.068	NULL	superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	(deletion:cds_exon[72195042,72195739])	no_errors	
OR10K2	391107	genome.wustl.edu	37	1	158390579	158390579	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158390579	158390579	C	T	SNP	OR10K2	NM_001004476	human	genbank	57_37b	-1	provisional	silent	c.78	p.L26	0.212	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
PCDHA6	56142	genome.wustl.edu	37	5	140209681	140209681	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140209681	140209681	C	T	SNP	PCDHA6	NM_018909	human	genbank	57_37b	+1	reviewed	silent	c.2005	p.L669	0.795	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PID1	55022	genome.wustl.edu	37	2	229890461	229890461	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	229890461	229890461	C	T	SNP	PID1	NM_017933	human	genbank	57_37b	-1	validated	missense	c.634	p.A212T	1.000	superfamily_SSF50729	superfamily_SSF50729	-	no_errors	
PORCN	64840	genome.wustl.edu	37	X	48378800	48378800	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48378800	48378800	A	T	SNP	PORCN	NM_203475	human	genbank	57_37b	+1	reviewed	missense	c.1322	p.E441V	1.000	NULL	HMMPfam_MBOAT	-	no_errors	
PTPRD	5789	genome.wustl.edu	37	9	8486284	8486284	+	Missense_Mutation	SNP	G	G	T	rs61733192	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	8486284	8486284	G	T	SNP	PTPRD	NM_002839	human	genbank	57_37b	-1	reviewed	missense	c.2533	p.P845T	1.000	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-		
RAD51	5888	genome.wustl.edu	37	15	41021711	41021711	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	41021711	41021711	T	G	SNP	RAD51	NM_002875	human	genbank	57_37b	+1	reviewed	missense	c.653	p.L218R	1.000	HMMPfam_Rad51,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382	superfamily_Rad51 N-terminal domain-like,HMMPfam_Rad51,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382	-	no_errors	
RNF185	91445	genome.wustl.edu	37	22	31602671	31602671	+	RNA	SNP	C	T	T	rs62237432	byCluster;by1000genomes	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	31602671	31602671	C	T	SNP	RNF185	NR_024209	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000	-	-	-		
RPS4X	6191	genome.wustl.edu	37	X	71493102	71493102	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	71493102	71493102	T	G	SNP	RPS4X	NM_001007	human	genbank	57_37b	-1	reviewed	missense	c.670	p.N224H	1.000	NULL	HMMPfam_RS4NT,PatternScan_RIBOSOMAL_S4E,HMMPfam_S4,HMMSmart_SM00363,HMMPfam_Ribosomal_S4e,HMMPfam_KOW	-	no_errors	
SLC16A13	201232	genome.wustl.edu	37	17	6940081	6940081	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	6940081	6940081	C	T	SNP	SLC16A13	NM_201566	human	genbank	57_37b	+1	validated	missense	c.235	p.P79S	0.996	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	-	no_errors	
SLC9A3	6550	genome.wustl.edu	37	5	475689	475689	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	475689	475689	G	-	DEL	SLC9A3	NM_004174	human	genbank	57_37b	-1	validated	frame_shift_del	c.2238	p.D747fs	0.015	NULL	HMMPfam_Na_H_Exchanger,PatternScan_WD_REPEATS_1	(deletion:cds_exon[475676,475786])	no_errors	
TACC1	6867	genome.wustl.edu	37	8	38696043	38696043	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	38696043	38696043	G	A	SNP	TACC1	NM_006283	human	genbank	57_37b	+1	reviewed	missense	c.1895	p.R632Q	0.999	HMMPfam_TACC	HMMPfam_TACC	-	no_errors	
TTBK1	84630	genome.wustl.edu	37	6	43252029	43252029	+	Missense_Mutation	SNP	T	T	C	rs3800298	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43252029	43252029	T	C	SNP	TTBK1	NM_032538	human	genbank	57_37b	+1	validated	missense	c.3551	p.L1184S	0.001	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP	-		
TTC9C	283237	genome.wustl.edu	37	11	62505789	62505789	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62505789	62505789	A	T	SNP	TTC9C	NM_173810	human	genbank	57_37b	+1	provisional	missense	c.451	p.T151S	1.000	superfamily_TPR-like	HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1,HMMPfam_TPR_2	-	no_errors	
WBSCR28	135886	genome.wustl.edu	37	7	73279580	73279580	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	73279580	73279580	C	T	SNP	WBSCR28	NM_182504	human	genbank	57_37b	+1	validated	silent	c.330	p.G110	0.007	NULL	NULL	-	no_errors	
WHSC2	7469	genome.wustl.edu	37	4	1987550	1987550	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	1987550	1987550	C	-	DEL	WHSC2	NM_005663	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.910	p.V304fs	0.998	NULL	NULL	(deletion:cds_exon[1987503,1987591])	no_errors	
WNT6	7475	genome.wustl.edu	37	2	219735910	219735910	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	219735910	219735910	G	A	SNP	WNT6	NM_006522	human	genbank	57_37b	+1	reviewed	missense	c.242	p.R81H	1.000	HMMPfam_wnt,HMMSmart_WNT1	HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1	-	no_errors	
ZNF135	7694	genome.wustl.edu	37	19	58578672	58578673	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	58578672	58578673	-	A	INS	ZNF135	NM_003436	human	genbank	57_37b	+1	validated	frame_shift_ins	c.820_821	p.C275fs	0.001:0.007	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZSCAN5B	342933	genome.wustl.edu	37	19	56703268	56703268	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HW-01A-11W-A050-09	TCGA-BH-A0HW-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56703268	56703268	C	T	SNP	ZSCAN5B	NM_001080456	human	genbank	57_37b	-1	validated	missense	c.539	p.R180H	0.026	NULL	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
