Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ARHGAP27	201176	genome.wustl.edu	37	17	43473379	43473379	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	43473379	43473379	A	G	SNP	ARHGAP27	NM_199282	human	genbank	57_37b	-1	validated	missense	c.1333	p.S445P	0.933	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	HMMSmart_SM00456,HMMPfam_WW,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
CARD11	84433	genome.wustl.edu	37	7	2987388	2987388	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	2987388	2987388	G	A	SNP	CARD11	NM_032415	human	genbank	57_37b	-1	validated	missense	c.41	p.T14M	0.982	NULL	PatternScan_GUANYLATE_KINASE_1,superfamily_DEATH_like,HMMPfam_CARD,superfamily_PDZ,HMMSmart_PDZ,superfamily_SSF52540	-	no_errors	
CHRM4	1132	genome.wustl.edu	37	11	46406905	46406905	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	46406905	46406905	C	T	SNP	CHRM4	NM_000741	human	genbank	57_37b	-1	reviewed	silent	c.1203	p.T401	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
CYGB	114757	genome.wustl.edu	37	17	74527737	74527737	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	74527737	74527737	G	A	SNP	CYGB	NM_134268	human	genbank	57_37b	-1	validated	silent	c.180	p.F60	1.000	superfamily_Globin-like,HMMPfam_Globin	superfamily_Globin-like,HMMPfam_Globin	-	no_errors	
ENSG00000245549	0	genome.wustl.edu	37	1	16950164	16950164	+	RNA	SNP	C	C	A	rs80271826	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16950164	16950164	C	A	SNP	ENSG00000245549	ENST00000501442	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
ENSG00000246292	0	genome.wustl.edu	37	5	140699881	140699881	+	RNA	SNP	G	G	C	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140699881	140699881	G	C	SNP	ENSG00000246292	ENST00000501021	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.786	-	-	-	no_errors	
ENSG00000246643	0	genome.wustl.edu	37	21	46221567	46221567	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	46221567	46221567	G	A	SNP	ENSG00000246643	ENST00000501236	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	
ERCC4	2072	genome.wustl.edu	37	16	14029554	14029554	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	14029554	14029554	C	T	SNP	ERCC4	NM_005236	human	genbank	57_37b	+1	reviewed	missense	c.1765	p.R589W	1.000	NULL	superfamily_Restrict_endonuc_II-like_core,HMMPfam_ERCC4	-	no_errors	
FAM117B	150864	genome.wustl.edu	37	2	203591033	203591036	+	Frame_Shift_Del	DEL	AAAG	AAAG	-	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	AAAG	AAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	203591033	203591036	AAAG	-	DEL	FAM117B	NM_173511	human	genbank	57_37b	+1	validated	frame_shift_del	c.175_178	p.E60fs	1.000:1.000:1.000:1.000	NULL	NULL	(deletion:cds_exon[203590973,203591086])	no_errors	
FAM53C	51307	genome.wustl.edu	37	5	137681156	137681162	+	Frame_Shift_Del	DEL	GGCGACC	GGCGACC	-	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	GGCGACC	GGCGACC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	137681156	137681162	GGCGACC	-	DEL	FAM53C	NM_001135647	human	genbank	57_37b	+1	validated	frame_shift_del	c.779_785	p.W260fs	1.000:1.000:1.000:1.000:1.000:1.000:0.793	NULL	NULL	(deletion:cds_exon[137680514,137681298])	no_errors	
GRM3	2913	genome.wustl.edu	37	7	86469059	86469059	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	86469059	86469059	C	T	SNP	GRM3	NM_000840	human	genbank	57_37b	+1	reviewed	silent	c.2229	p.Y743	0.516	HMMPfam_7tm_3	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors	
HELB	92797	genome.wustl.edu	37	12	66717817	66717817	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	66717817	66717817	G	T	SNP	HELB	NM_033647	human	genbank	57_37b	+1	reviewed	missense	c.2352	p.R784S	0.991	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
ITPR3	3710	genome.wustl.edu	37	6	33655053	33655053	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	33655053	33655053	G	A	SNP	ITPR3	NM_002224	human	genbank	57_37b	+1	validated	silent	c.6126	p.S2042	0.003	NULL	HMMPfam_Ins145_P3_rec,superfamily_MIR,HMMSmart_MIR,HMMPfam_MIR,superfamily_SSF100909,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans	-	no_errors	
KIAA1324	57535	genome.wustl.edu	37	1	109727733	109727733	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	109727733	109727733	C	T	SNP	KIAA1324	NM_020775	human	genbank	57_37b	+1	validated	missense	c.1019	p.T340M	1.000	superfamily_Growth factor receptor domain	superfamily_Growth factor receptor domain,superfamily_Mannose 6-phosphate receptor domain	-	no_errors	
MUC6	4588	genome.wustl.edu	37	11	1019367	1019368	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	GC	GC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1019367	1019368	GC	-	DEL	MUC6	NM_005961	human	genbank	57_37b	-1	validated	frame_shift_del	c.3938_3937	p.A1313fs	0.002:0.000	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00215,HMMSmart_SM00041	(deletion:cds_exon[1019275,1019496])	no_errors	
NCAM2	4685	genome.wustl.edu	37	21	22696711	22696711	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	22696711	22696711	G	A	SNP	NCAM2	NM_004540	human	genbank	57_37b	+1	reviewed	missense	c.628	p.A210T	0.999	superfamily_SSF48726	HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors	
PCNX	22990	genome.wustl.edu	37	14	71543011	71543011	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	71543011	71543011	G	A	SNP	PCNX	NM_014982	human	genbank	57_37b	+1	validated	missense	c.5212	p.V1738M	1.000	NULL	HMMPfam_Pecanex_C	-	no_errors	
POLR3C	10623	genome.wustl.edu	37	1	145608467	145608467	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	145608467	145608467	C	T	SNP	POLR3C	NM_006468	human	genbank	57_37b	-1	provisional	missense	c.340	p.G114S	1.000	NULL	HMMPfam_HTH_9,HMMPfam_RNA_pol_Rpc82	-	no_errors	
SEMA3E	9723	genome.wustl.edu	37	7	82997122	82997122	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	82997122	82997122	G	A	SNP	SEMA3E	NM_012431	human	genbank	57_37b	-1	provisional	missense	c.2108	p.S703L	0.044	NULL	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	-	no_errors	
SPATA18	132671	genome.wustl.edu	37	4	52946023	52946023	+	Missense_Mutation	SNP	G	G	C	rs79854970	byCluster;by1000genomes	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	52946023	52946023	G	C	SNP	SPATA18	NM_145263	human	genbank	57_37b	+1	provisional	missense	c.1293	p.Q431H	1.000	NULL	NULL	-		
ST18	9705	genome.wustl.edu	37	8	53038615	53038615	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	53038615	53038615	C	T	SNP	ST18	NM_014682	human	genbank	57_37b	-1	validated	missense	c.2752	p.G918R	0.993	NULL	superfamily_SSF103637,HMMPfam_zf-C2HC,HMMPfam_MYT1	-	no_errors	
TFDP1	7027	genome.wustl.edu	37	13	114292199	114292199	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	114292199	114292199	G	T	SNP	TFDP1	NM_007111	human	genbank	57_37b	+1	reviewed	missense	c.1073	p.R358M	1.000	NULL	HMMPfam_E2F_TDP,superfamily_SSF46785,HMMPfam_DP	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7574003	7574003	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7574003	7574003	G	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	nonsense	c.1024	p.R342*	0.307	HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
VANGL2	57216	genome.wustl.edu	37	1	160389104	160389104	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160389104	160389104	C	T	SNP	VANGL2	NM_020335	human	genbank	57_37b	+1	validated	missense	c.505	p.R169C	1.000	HMMPfam_Strabismus	HMMPfam_Strabismus	-	no_errors	
ZFP28	140612	genome.wustl.edu	37	19	57050515	57050515	+	Missense_Mutation	SNP	C	C	G	rs7258088	byCluster;by1000genomes	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	57050515	57050515	C	G	SNP	ZFP28	NM_020828	human	genbank	57_37b	+1	provisional	missense	c.128	p.A43G	0.015	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-		
ZIC4	84107	genome.wustl.edu	37	3	147108957	147108957	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	147108957	147108957	C	T	SNP	ZIC4	ENST00000383075	human	ensembl	57_37b	-1	known	silent	c.765	p.S255	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
