Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AKT1	207	genome.wustl.edu	37	14	105246551	105246551	+	Missense_Mutation	SNP	C	C	T	rs121434592	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105246551	105246551	C	T	SNP	AKT1	NM_001014431	human	genbank	57_37b	-1	reviewed	missense	c.49	p.E17K	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-		
ANO7	50636	genome.wustl.edu	37	2	242155637	242155637	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	242155637	242155637	C	T	SNP	ANO7	NM_001001891	human	genbank	57_37b	+1	validated	silent	c.2118	p.D706	0.573	HMMPfam_DUF590	HMMPfam_DUF590	-	no_errors	
APBB3	10307	genome.wustl.edu	37	5	139939900	139939900	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	139939900	139939900	T	C	SNP	APBB3	NM_006051	human	genbank	57_37b	-1	reviewed	missense	c.1243	p.M415V	1.000	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID	-	no_errors	
AZU1	566	genome.wustl.edu	37	19	829568	829568	+	Silent	SNP	C	C	T	rs12460890	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	829568	829568	C	T	SNP	AZU1	NM_001700	human	genbank	57_37b	+1	reviewed	silent	c.222	p.P74	0.000	HMMSmart_Tryp_SPc,HMMPfam_Trypsin,superfamily_Pept_Ser_Cys	PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,superfamily_Pept_Ser_Cys	-		
C11orf40	143501	genome.wustl.edu	37	11	4594539	4594539	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4594539	4594539	A	G	SNP	C11orf40	NM_144663	human	genbank	57_37b	-1	provisional	missense	c.305	p.V102A	0.001	NULL	NULL	-	no_errors	
C11orf84	144097	genome.wustl.edu	37	11	63585750	63585750	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	63585750	63585750	G	A	SNP	C11orf84	NM_138471	human	genbank	57_37b	+1	predicted	missense	c.520	p.E174K	0.987	NULL	NULL	-	no_errors	
C16orf71	146562	genome.wustl.edu	37	16	4794873	4794873	+	Missense_Mutation	SNP	C	C	T	rs2075469	byCluster;byFrequency;bySubmitter;byHapMap;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	4794873	4794873	C	T	SNP	C16orf71	NM_139170	human	genbank	57_37b	+1	validated	missense	c.904	p.R302C	0.009	NULL	NULL	-		
CCDC96	257236	genome.wustl.edu	37	4	7044600	7044600	+	Silent	SNP	G	G	A	rs2359010	byCluster;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	7044600	7044600	G	A	SNP	CCDC96	NM_153376	human	genbank	57_37b	-1	validated	silent	c.66	p.A22	0.000	NULL	NULL	-		
CDK11A	0	genome.wustl.edu	37	1	1653040	1653040	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1653040	1653040	T	A	SNP	CDK11A	NM_024011	human	genbank	57_37b	-1	reviewed	missense	c.222	p.E74D	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
CDKN1B	1027	genome.wustl.edu	37	12	12870900	12870901	+	Frame_Shift_Del	DEL	CG	CG	-	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	CG	CG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	12870900	12870901	CG	-	DEL	CDKN1B	NM_004064	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.127_128	p.R43fs	0.998:1.000	HMMPfam_CDI	HMMPfam_CDI	(deletion:cds_exon[12870774,12871248])	no_errors	
CHAF1A	10036	genome.wustl.edu	37	19	4443046	4443046	+	Missense_Mutation	SNP	T	T	C	rs2992	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4443046	4443046	T	C	SNP	CHAF1A	ENST00000344143	human	ensembl	57_37b	+1	known	missense	c.2114	p.M705T	0.000	NULL	NULL	-		
CHCHD6	84303	genome.wustl.edu	37	3	126445927	126445927	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	126445927	126445927	G	A	SNP	CHCHD6	NM_032343	human	genbank	57_37b	+1	provisional	missense	c.94	p.E32K	1.000	HMMPfam_DUF737	HMMPfam_DUF737,HMMPfam_CHCH	-	no_errors	
CORO2B	10391	genome.wustl.edu	37	15	69003905	69003905	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	69003905	69003905	G	T	SNP	CORO2B	ENST00000261861	human	ensembl	57_37b	+1	known	missense	c.508	p.G170C	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	HMMPfam_DUF1899,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_DUF1900	-	no_errors	
CTCF	10664	genome.wustl.edu	37	16	67645919	67645919	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67645919	67645919	C	T	SNP	CTCF	NM_006565	human	genbank	57_37b	+1	reviewed	missense	c.847	p.R283C	1.000	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	
DAB2	1601	genome.wustl.edu	37	5	39394418	39394418	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	39394418	39394418	G	A	SNP	DAB2	NM_001343	human	genbank	57_37b	-1	validated	missense	c.5	p.S2F	1.000	NULL	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,PatternScan_PFKB_KINASES_1	-	no_errors	
DCHS2	54798	genome.wustl.edu	37	4	155411883	155411883	+	Missense_Mutation	SNP	G	G	A	rs17373860	byCluster;byFrequency;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	155411883	155411883	G	A	SNP	DCHS2	NM_001142552	human	genbank	57_37b	-1	validated	missense	c.625	p.P209S	0.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	-		
DKFZp686A1627	266695	genome.wustl.edu	37	13	19625340	19625340	+	RNA	SNP	G	G	A	rs9553323	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	19625340	19625340	G	A	SNP	DKFZp686A1627	NR_002801	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	1.000	-	-	-		
DNAJC15	29103	genome.wustl.edu	37	13	43597865	43597865	+	Missense_Mutation	SNP	A	A	G	rs11617079	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	43597865	43597865	A	G	SNP	DNAJC15	NM_013238	human	genbank	57_37b	+1	validated	missense	c.103	p.R35G	0.000	NULL	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ	-		
DTX1	1840	genome.wustl.edu	37	12	113532617	113532617	+	Silent	SNP	A	A	G	rs12427377	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	113532617	113532617	A	G	SNP	DTX1	NM_004416	human	genbank	57_37b	+1	reviewed	silent	c.1251	p.R417	0.966	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	PatternScan_ZF_RING_1,HMMPfam_WWE,HMMSmart_WWE,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	-		
EED	8726	genome.wustl.edu	37	11	85977150	85977150	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	85977150	85977150	T	C	SNP	EED	NM_003797	human	genbank	57_37b	+1	reviewed	missense	c.752	p.I251T	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
EFTUD2	9343	genome.wustl.edu	37	17	42964087	42964087	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42964087	42964087	C	A	SNP	EFTUD2	NM_004247	human	genbank	57_37b	-1	validated	missense	c.137	p.G46V	0.987	NULL	PatternScan_EFACTOR_GTP,superfamily_SSF52540,HMMPfam_GTP_EFTU,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,superfamily_EFG_III_V,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_EFG_IV,HMMPfam_EFG_C	-	no_errors	
ELMOD3	0	genome.wustl.edu	37	2	85617913	85617913	+	Missense_Mutation	SNP	G	G	T	rs17850709	byCluster;byFrequency;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	85617913	85617913	G	T	SNP	ELMOD3	NM_001135021	human	genbank	57_37b	+1	validated	missense	c.974	p.R325L	0.029	NULL	HMMPfam_ELMO_CED12	-		
ENSG00000245513	0	genome.wustl.edu	37	3	129829755	129829755	+	RNA	SNP	G	G	A	rs2001440	by2Hit2Allele;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	129829755	129829755	G	A	SNP	ENSG00000245513	ENST00000498911	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000246305	0	genome.wustl.edu	37	2	172967302	172967302	+	RNA	SNP	C	C	T	rs743605	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	172967302	172967302	C	T	SNP	ENSG00000246305	ENST00000501427	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.274	-	-	-		
FDXR	2232	genome.wustl.edu	37	17	72862593	72862593	+	Missense_Mutation	SNP	C	C	T	rs690514	byCluster;byFrequency;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72862593	72862593	C	T	SNP	FDXR	NM_004110	human	genbank	57_37b	-1	reviewed	missense	c.368	p.R123Q	0.902	superfamily_SSF51971,HMMPfam_Pyr_redox_2	superfamily_SSF51971,HMMPfam_Pyr_redox_2,superfamily_SSF51905	-		
GNA15	2769	genome.wustl.edu	37	19	3151786	3151786	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3151786	3151786	C	G	SNP	GNA15	NM_002068	human	genbank	57_37b	+1	validated	silent	c.567	p.T189	1.000	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Transducin (alpha subunit) insertion domain	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Transducin (alpha subunit) insertion domain	-	no_errors	
HAS1	3036	genome.wustl.edu	37	19	52223121	52223121	+	Missense_Mutation	SNP	A	A	G	rs7248778	byCluster;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52223121	52223121	A	G	SNP	HAS1	NM_001523	human	genbank	57_37b	-1	reviewed	missense	c.40	p.C14R	0.942	NULL	superfamily_SSF53448,HMMPfam_Glycos_transf_2	-		
HLCS	3141	genome.wustl.edu	37	21	38308910	38308910	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	38308910	38308910	C	T	SNP	HLCS	NM_000411	human	genbank	57_37b	-1	reviewed	missense	c.835	p.E279K	0.001	NULL	superfamily_SSF55681,HMMPfam_BPL_LipA_LipB,HMMPfam_BPL_C	-	no_errors	
IGHV3-6	0	genome.wustl.edu	37	14	106237898	106237898	+	Missense_Mutation	SNP	C	G	G	rs71424552	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	106237898	106237898	C	G	SNP	IGHV3-6	ENST00000428270	human	ensembl	57_37b	-1	known	missense	c.32	p.R11T	0.028	NULL	superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC	-		
ITPR1	3708	genome.wustl.edu	37	3	4726865	4726865	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	4726865	4726865	A	G	SNP	ITPR1	NM_001099952	human	genbank	57_37b	+1	reviewed	missense	c.3650	p.E1217G	1.000	HMMPfam_RYDR_ITPR	HMMPfam_Ins145_P3_rec,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472,HMMPfam_MIR,superfamily_IP3 receptor type 1 binding core domain 2,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans	-	no_errors	
KIAA1033	23325	genome.wustl.edu	37	12	105543489	105543489	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	105543489	105543489	C	T	SNP	KIAA1033	NM_015275	human	genbank	57_37b	+1	validated	nonsense	c.2611	p.R871*	1.000	NULL	NULL	-	no_errors	
KRTAP4-5	85289	genome.wustl.edu	37	17	39305785	39305785	+	Missense_Mutation	SNP	A	A	T	rs411367	byCluster;byHapMap	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39305785	39305785	A	T	SNP	KRTAP4-5	NM_033188	human	genbank	57_37b	-1	reviewed	missense	c.235	p.C79S	0.000	HMMPfam_Keratin_B2,PatternScan_TNFR_NGFR_1	HMMPfam_Keratin_B2,PatternScan_TNFR_NGFR_1	-		
LEPREL1	55214	genome.wustl.edu	37	3	189692391	189692391	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	189692391	189692391	C	T	SNP	LEPREL1	NM_018192	human	genbank	57_37b	-1	validated	missense	c.1408	p.V470I	0.999	HMMSmart_SM00702	superfamily_TPR-like,HMMSmart_SM00702,HMMPfam_2OG-FeII_Oxy	-	no_errors	
LOC100287587	0	genome.wustl.edu	37	15	74032783	74032783	+	Missense_Mutation	SNP	A	A	G	rs28594180	byCluster;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	74032783	74032783	A	G	SNP	LOC100287587	XM_002343351	human	genbank	57_37b	+1	model	missense	c.325	p.R109G	0.967	NULL	PatternScan_AMP_BINDING	-		
LOC283685	0	genome.wustl.edu	37	15	23685275	23685275	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	23685275	23685275	C	T	SNP	LOC283685	XM_002343322	human	genbank	57_37b	-1	model	missense	c.1902	p.M634I	0.042	NULL	NULL	-	no_errors	
LOC348926	348926	genome.wustl.edu	37	4	3949077	3949077	+	RNA	SNP	T	T	C	rs13116096	byCluster;byFrequency	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	3949077	3949077	T	C	SNP	LOC348926	NR_024253	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.000	-	-	-		
LOC728064	728064	genome.wustl.edu	37	10	43178874	43178874	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	43178874	43178874	C	T	SNP	LOC728064	XR_015196	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.001	-	-	-	no_errors	
MET	4233	genome.wustl.edu	37	7	116371755	116371755	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	116371755	116371755	C	G	SNP	MET	NM_001127500	human	genbank	57_37b	+1	reviewed	missense	c.1234	p.R412G	0.601	superfamily_Sema,HMMSmart_Sema,HMMPfam_Sema	superfamily_Sema,HMMSmart_Sema,HMMPfam_Sema,superfamily_Plexin-like_fold,HMMPfam_PSI,HMMSmart_PSI,superfamily_Ig_E-set,HMMSmart_IPT,HMMPfam_TIG,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
MLF2	8079	genome.wustl.edu	37	12	6858126	6858126	+	Silent	SNP	G	G	A	rs2302371	byCluster;byFrequency;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6858126	6858126	G	A	SNP	MLF2	NM_005439	human	genbank	57_37b	-1	validated	silent	c.582	p.D194	0.960	HMMPfam_Mlf1IP	HMMPfam_Mlf1IP	-		
MSGN1	343930	genome.wustl.edu	37	2	17998095	17998095	+	Missense_Mutation	SNP	C	C	T	rs35858730	byCluster;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	17998095	17998095	C	T	SNP	MSGN1	NM_001105569	human	genbank	57_37b	+1	provisional	missense	c.310	p.H104Y	0.011	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-		
MUC5B	727897	genome.wustl.edu	37	11	1250488	1250488	+	Silent	SNP	C	C	T	rs2075859	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1250488	1250488	C	T	SNP	MUC5B	NM_002458	human	genbank	57_37b	+1	validated	silent	c.1065	p.C355	0.963	superfamily_Serine proterase inhibitors,HMMPfam_TIL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot,PatternScan_CTCK_1	-		
NCOR2	9612	genome.wustl.edu	37	12	124856618	124856618	+	Silent	SNP	A	A	G	rs7961196	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	124856618	124856618	A	G	SNP	NCOR2	NM_006312	human	genbank	57_37b	-1	validated	silent	c.2757	p.A919	1.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	-		
NID2	22795	genome.wustl.edu	37	14	52481917	52481917	+	Silent	SNP	C	C	T	rs946615	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	52481917	52481917	C	T	SNP	NID2	NM_007361	human	genbank	57_37b	-1	validated	silent	c.3105	p.R1035	0.476	superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1	HMMSmart_SM00539,HMMPfam_NIDO,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,HMMSmart_SM00682,HMMPfam_G2F,superfamily_GFP-like,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	-		
NPY1R	4886	genome.wustl.edu	37	4	164247028	164247028	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	164247028	164247028	T	G	SNP	NPY1R	NM_000909	human	genbank	57_37b	-1	validated	missense	c.679	p.I227L	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR7D2	162998	genome.wustl.edu	37	19	9296535	9296535	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9296535	9296535	C	T	SNP	OR7D2	NM_175883	human	genbank	57_37b	+1	provisional	silent	c.78	p.F26	0.000	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PCDH15	65217	genome.wustl.edu	37	10	55626527	55626527	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	55626527	55626527	C	A	SNP	PCDH15	NM_001142763	human	genbank	57_37b	-1	reviewed	nonsense	c.3607	p.E1203*	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like,HMMPfam_Cadherin	-	no_errors	
PHLPP1	23239	genome.wustl.edu	37	18	60645818	60645818	+	Silent	SNP	C	C	T	rs62100048	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	60645818	60645818	C	T	SNP	PHLPP1	NM_194449	human	genbank	57_37b	+1	validated	silent	c.2772	p.A924	0.001	NULL	HMMPfam_PH,superfamily_L domain-like,HMMSmart_SM00369,HMMSmart_SM00364,HMMPfam_LRR_1,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C	-		
PLEC	0	genome.wustl.edu	37	8	144992103	144992103	+	Silent	SNP	T	T	C	rs6558406	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144992103	144992103	T	C	SNP	PLEC	NM_201380	human	genbank	57_37b	-1	reviewed	silent	c.12297	p.T4099	0.003	superfamily_Plakin repeat,HMMPfam_Plectin,HMMSmart_SM00250	HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	-		
POLE	5426	genome.wustl.edu	37	12	133250202	133250202	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	133250202	133250202	C	T	SNP	POLE	NM_006231	human	genbank	57_37b	-1	validated	missense	c.1318	p.D440N	1.000	superfamily_RNaseH_fold,HMMSmart_POLBc	superfamily_RNaseH_fold,HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,HMMPfam_DNA_pol_B,superfamily_SSF56672,HMMPfam_DUF1744	-	no_errors	
PPYR1	5540	genome.wustl.edu	37	10	47087301	47087301	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	47087301	47087301	C	G	SNP	PPYR1	NM_005972	human	genbank	57_37b	+1	validated	missense	c.518	p.P173R	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PRKAG2	51422	genome.wustl.edu	37	7	151573642	151573642	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151573642	151573642	C	T	SNP	PRKAG2	NM_016203	human	genbank	57_37b	-1	reviewed	missense	c.64	p.G22S	0.997	NULL	superfamily_CBS-domain,HMMPfam_CBS,HMMSmart_SM00116	-	no_errors	
PYCRL	65263	genome.wustl.edu	37	8	144688736	144688736	+	Missense_Mutation	SNP	C	C	G	rs2242090	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144688736	144688736	C	G	SNP	PYCRL	NM_023078	human	genbank	57_37b	-1	validated	missense	c.486	p.K162N	0.016	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_F420_oxidored	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_F420_oxidored,PatternScan_P5CR	-		
RBM47	54502	genome.wustl.edu	37	4	40440215	40440215	+	Silent	SNP	T	T	C	rs2291580	byCluster;byFrequency;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	40440215	40440215	T	C	SNP	RBM47	NM_001098634	human	genbank	57_37b	-1	validated	silent	c.696	p.E232	1.000	superfamily_RNA-binding domain RBD	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-		
SSTR3	6753	genome.wustl.edu	37	22	37603745	37603745	+	Missense_Mutation	SNP	G	G	A	rs4988466	byCluster;byFrequency;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	37603745	37603745	G	A	SNP	SSTR3	NM_001051	human	genbank	57_37b	-1	reviewed	missense	c.98	p.A33V	0.000	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-		
TAF1	6872	genome.wustl.edu	37	X	70598836	70598836	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	70598836	70598836	C	T	SNP	TAF1	NM_004606	human	genbank	57_37b	+1	reviewed	missense	c.1375	p.P459S	1.000	NULL	HMMPfam_TBP-binding,superfamily_TAF_II_230,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
TCEB3	6924	genome.wustl.edu	37	1	24077576	24077576	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	24077576	24077576	A	G	SNP	TCEB3	NM_003198	human	genbank	57_37b	+1	reviewed	missense	c.559	p.M187V	0.001	NULL	superfamily_Conserved domain common to transcription factors TFIIS elongin A CRSP70,HMMPfam_TFIIS,HMMSmart_SM00509,HMMPfam_Elongin_A	-	no_errors	
TMEM223	79064	genome.wustl.edu	37	11	62559351	62559351	+	Missense_Mutation	SNP	T	T	C	rs118167825	by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62559351	62559351	T	C	SNP	TMEM223	NM_001080501	human	genbank	57_37b	-1	validated	missense	c.116	p.H39R	1.000	NULL	NULL	-		
VCAM1	7412	genome.wustl.edu	37	1	101196752	101196752	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	101196752	101196752	A	G	SNP	VCAM1	NM_001078	human	genbank	57_37b	+1	reviewed	splice_site	c.1205-2	e6-2	0.991	-	-	-	no_errors	
VMAC	400673	genome.wustl.edu	37	19	5908969	5908969	+	Missense_Mutation	SNP	G	G	A	rs10404195	byCluster;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	5908969	5908969	G	A	SNP	VMAC	NM_001017921	human	genbank	57_37b	+1	validated	missense	c.326	p.R109H	0.029	NULL	NULL	-		
XAB2	56949	genome.wustl.edu	37	19	7685843	7685843	+	Silent	SNP	G	G	A	rs794078	byCluster;byFrequency;by1000genomes	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	7685843	7685843	G	A	SNP	XAB2	NM_020196	human	genbank	57_37b	-1	validated	silent	c.1860	p.T620	0.110	HMMSmart_HAT	HMMSmart_HAT,superfamily_SSF48452	-		
ZNF592	9640	genome.wustl.edu	37	15	85325994	85325994	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	85325994	85325994	A	-	DEL	ZNF592	NM_014630	human	genbank	57_37b	+1	validated	frame_shift_del	c.88	p.I30fs	1.000	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	(deletion:cds_exon[85325907,85328126])	no_errors	
ZRANB1	54764	genome.wustl.edu	37	10	126655277	126655277	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0W4-01A-11D-A10G-09	TCGA-BH-A0W4-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	126655277	126655277	A	T	SNP	ZRANB1	NM_017580	human	genbank	57_37b	+1	validated	missense	c.929	p.D310V	1.000	NULL	HMMPfam_zf-RanBP,HMMSmart_ZnF_RBZ,PatternScan_ZF_RANBP2_1,superfamily_SSF90209,HMMPfam_OTU	-	no_errors	
