Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ARHGEF4	50649	genome.wustl.edu	37	2	131796570	131796570	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	131796570	131796570	G	A	SNP	ARHGEF4	NM_015320	human	genbank	57_37b	+1	reviewed	missense	c.712	p.D238N	0.886	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
ATP10A	57194	genome.wustl.edu	37	15	25947227	25947227	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	25947227	25947227	G	A	SNP	ATP10A	NM_024490	human	genbank	57_37b	-1	reviewed	missense	c.2596	p.R866C	1.000	superfamily_SSF56784	HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Hydrolase_3	-	no_errors	
BCHE	590	genome.wustl.edu	37	3	165504044	165504044	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	165504044	165504044	C	A	SNP	BCHE	NM_000055	human	genbank	57_37b	-1	reviewed	nonsense	c.1573	p.E525*	0.985	HMMPfam_COesterase,superfamily_SSF53474	HMMPfam_COesterase,superfamily_SSF53474,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1,HMMPfam_AChE_tetra	-	no_errors	
C7orf27	221927	genome.wustl.edu	37	7	2577781	2577781	+	Silent	SNP	T	T	C	rs1043291	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	2577781	2577781	T	C	SNP	C7orf27	NM_152743	human	genbank	57_37b	-1	provisional	silent	c.2388	p.E796	0.958	NULL	superfamily_ARM repeat,HMMPfam_HEAT	-		
CAMKK2	10645	genome.wustl.edu	37	12	121712041	121712041	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	121712041	121712041	G	A	SNP	CAMKK2	NM_006549	human	genbank	57_37b	-1	reviewed	missense	c.289	p.R97C	0.981	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
CBR3	874	genome.wustl.edu	37	21	37507501	37507501	+	Missense_Mutation	SNP	G	G	A	rs8133052	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	37507501	37507501	G	A	SNP	CBR3	NM_001236	human	genbank	57_37b	+1	reviewed	missense	c.11	p.C4Y	1.000	superfamily_NAD(P)-bd	superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT	-		
CEP192	55125	genome.wustl.edu	37	18	13059100	13059100	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	13059100	13059100	G	A	SNP	CEP192	NM_032142	human	genbank	57_37b	+1	validated	missense	c.2489	p.R830H	1.000	NULL	NULL	-	no_errors	
CNTNAP5	129684	genome.wustl.edu	37	2	125547610	125547610	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	125547610	125547610	A	T	SNP	CNTNAP5	NM_130773	human	genbank	57_37b	+1	reviewed	missense	c.2881	p.S961C	1.000	superfamily_ConA_like_lec_gl,HMMSmart_EGF,HMMPfam_EGF	PatternScan_FA58C_1,PatternScan_FIBRIN_AG_C_DOMAIN,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_2,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMSmart_EGF,HMMPfam_EGF,superfamily_Fibrinogen_a/b/g_C	-	no_errors	
ENSG00000246005	0	genome.wustl.edu	37	6	2244355	2244355	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	2244355	2244355	C	T	SNP	ENSG00000246005	ENST00000500716	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	
ENSG00000247713	0	genome.wustl.edu	37	12	81331258	81331258	+	RNA	SNP	G	G	A	rs73345662	byCluster;byFrequency;by1000genomes	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	81331258	81331258	G	A	SNP	ENSG00000247713	ENST00000500134	human	ensembl	57_37b	+1	known	rna	NULL	NULL	1.000	-	-	-		
ENSG00000247772	0	genome.wustl.edu	37	11	47377894	47377895	+	RNA	DEL	CA	CA	-	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47377894	47377895	CA	-	DEL	ENSG00000247772	ENST00000499849	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.007:0.007	-	-	(deletion:rna[47376886,47379300])	no_errors	
GAB1	2549	genome.wustl.edu	37	4	144360988	144360988	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	144360988	144360988	G	A	SNP	GAB1	NM_207123	human	genbank	57_37b	+1	reviewed	missense	c.1229	p.R410Q	1.000	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors	
GLCCI1	113263	genome.wustl.edu	37	7	8099816	8099816	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	8099816	8099816	A	G	SNP	GLCCI1	NM_138426	human	genbank	57_37b	+1	validated	missense	c.904	p.I302V	1.000	NULL	NULL	-	no_errors	
GPN2	54707	genome.wustl.edu	37	1	27210723	27210723	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	27210723	27210723	A	T	SNP	GPN2	NM_018066	human	genbank	57_37b	-1	validated	missense	c.788	p.F263Y	1.000	superfamily_SSF52540	superfamily_SSF52540,HMMPfam_ATP_bind_1	-	no_errors	
GRK6	2870	genome.wustl.edu	37	5	176860631	176860631	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	176860631	176860631	C	T	SNP	GRK6	NM_002082	human	genbank	57_37b	+1	reviewed	missense	c.692	p.A231V	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X	-	no_errors	
HACE1	57531	genome.wustl.edu	37	6	105198288	105198288	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	105198288	105198288	G	A	SNP	HACE1	NM_020771	human	genbank	57_37b	-1	validated	silent	c.2271	p.I757	1.000	superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors	
HMBOX1	79618	genome.wustl.edu	37	8	28827654	28827654	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	28827654	28827654	A	-	DEL	HMBOX1	NM_001135726	human	genbank	57_37b	+1	validated	frame_shift_del	c.118	p.K40fs	1.000	NULL	superfamily_lambda repressor-like DNA-binding domains,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	(deletion:cds_exon[28827560,28828036])	no_errors	
IQGAP3	128239	genome.wustl.edu	37	1	156499903	156499903	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156499903	156499903	C	T	SNP	IQGAP3	NM_178229	human	genbank	57_37b	-1	validated	silent	c.4398	p.L1466	1.000	HMMPfam_RasGAP_C	superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH,HMMSmart_IQ,superfamily_SSF52540,HMMPfam_IQ,superfamily_Rho_GAP,HMMSmart_RasGAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMPfam_RasGAP_C	-	no_errors	
KLF7	8609	genome.wustl.edu	37	2	207998800	207998800	+	Silent	SNP	C	C	T	rs2284934	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	207998800	207998800	C	T	SNP	KLF7	ENST00000435602	human	ensembl	57_37b	-1	known	silent	c.9	p.P3	0.901	NULL	NULL	-		
LCT	3938	genome.wustl.edu	37	2	136570313	136570313	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	136570313	136570313	A	-	DEL	LCT	NM_002299	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1921	p.Y641fs	1.000	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat	superfamily_Glyco_hydro_cat,HMMPfam_Glyco_hydro_1,PatternScan_GLYCOSYL_HYDROL_F1_2,PatternScan_GLYCOSYL_HYDROL_F1_1	(deletion:cds_exon[136569881,136570526])	no_errors	
LOC642846	642846	genome.wustl.edu	37	12	9466099	9466099	+	RNA	SNP	C	C	T	rs2377762	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	9466099	9466099	C	T	SNP	LOC642846	NR_024374	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.002	-	-	-		
LOC729806	729806	genome.wustl.edu	37	1	247353355	247353355	+	Silent	SNP	G	G	A	rs1115201	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247353355	247353355	G	A	SNP	LOC729806	XM_002342180	human	genbank	57_37b	-1	model	silent	c.1677	p.C559	0.035	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-		
MAP1A	4130	genome.wustl.edu	37	15	43814174	43814174	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	43814174	43814174	G	A	SNP	MAP1A	NM_002373	human	genbank	57_37b	+1	reviewed	missense	c.503	p.R168H	1.000	NULL	superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors	
MRPL23	6150	genome.wustl.edu	37	11	1977619	1977619	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1977619	1977619	G	A	SNP	MRPL23	NM_021134	human	genbank	57_37b	+1	reviewed	missense	c.431	p.R144Q	0.969	NULL	superfamily_L23_L15e_core,HMMPfam_Ribosomal_L23	-	no_errors	
MYO9A	4649	genome.wustl.edu	37	15	72192139	72192139	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	72192139	72192139	A	G	SNP	MYO9A	NM_006901	human	genbank	57_37b	-1	validated	missense	c.3359	p.I1120T	0.000	HMMSmart_SM00015,HMMPfam_IQ,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_RA,HMMSmart_SM00314,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
NLRC3	197358	genome.wustl.edu	37	16	3611738	3611738	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	3611738	3611738	C	T	SNP	NLRC3	NM_178844	human	genbank	57_37b	-1	validated	silent	c.1980	p.V660	0.999	superfamily_RNI-like	PatternScan_LIPOCALIN,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368	-	no_errors	
NS3BP	0	genome.wustl.edu	37	11	779671	779671	+	RNA	SNP	C	C	T	rs7111003	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	779671	779671	C	T	SNP	NS3BP	XR_041090	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.000	-	-	-		
PCDHGA1	56114	genome.wustl.edu	37	5	140710391	140710391	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140710391	140710391	A	G	SNP	PCDHGA1	NM_018912	human	genbank	57_37b	+1	reviewed	missense	c.140	p.N47S	0.990	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PCDHGB6	56100	genome.wustl.edu	37	5	140788500	140788500	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140788500	140788500	G	A	SNP	PCDHGB6	NM_018926	human	genbank	57_37b	+1	reviewed	missense	c.731	p.R244K	0.842	superfamily_Cadherin-like	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1624	p.E542K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
POU2F2	5452	genome.wustl.edu	37	19	42599576	42599576	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42599576	42599576	G	A	SNP	POU2F2	NM_002698	human	genbank	57_37b	-1	validated	silent	c.945	p.A315	0.228	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
SNRNP70	6625	genome.wustl.edu	37	19	49611319	49611319	+	Silent	SNP	C	T	T	rs1058882	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49611319	49611319	C	T	SNP	SNRNP70	NM_003089	human	genbank	57_37b	+1	validated	silent	c.933	p.G311	0.014	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-		
UBAP1	51271	genome.wustl.edu	37	9	34241932	34241932	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	34241932	34241932	G	A	SNP	UBAP1	NM_016525	human	genbank	57_37b	+1	reviewed	silent	c.909	p.K303	1.000	NULL	superfamily_UBA-like	-	no_errors	
UGGT2	55757	genome.wustl.edu	37	13	96529583	96529583	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18I-01A-11D-A12B-09	TCGA-BH-A18I-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	96529583	96529583	C	G	SNP	UGGT2	NM_020121	human	genbank	57_37b	-1	validated	missense	c.3423	p.W1141C	1.000	NULL	HMMPfam_UDP-g_GGTase,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors	
