Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AKAP6	9472	genome.wustl.edu	37	14	33290671	33290671	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	33290671	33290671	G	C	SNP	AKAP6	NM_004274	human	genbank	57_37b	+1	reviewed	missense	c.3652	p.E1218Q	1.000	NULL	HMMSmart_SM00150,superfamily_Spectrin repeat,PatternScan_PFKB_KINASES_2	-	no_errors	
ALPP	250	genome.wustl.edu	37	2	233243529	233243531	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	233243529	233243531	TGC	-	DEL	ALPP	NM_001632	human	genbank	57_37b	+1	reviewed	in_frame_del	c.17_19	p.L10in_frame_del	0.645:0.641:0.627	NULL	superfamily_Alkaline_phosphatase_core,HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,PatternScan_ALKALINE_PHOSPHATASE	(deletion:cds_exon[233243513,233243588])	no_errors	
ASB16	92591	genome.wustl.edu	37	17	42255078	42255078	+	Silent	SNP	A	A	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42255078	42255078	A	T	SNP	ASB16	NM_080863	human	genbank	57_37b	+1	reviewed	silent	c.1164	p.P388	0.454	superfamily_Ankyrin repeat	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_SOCS_box	-	no_errors	
ATRX	546	genome.wustl.edu	37	X	76940008	76940008	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	76940008	76940008	T	C	SNP	ATRX	NM_000489	human	genbank	57_37b	-1	reviewed	missense	c.740	p.N247S	1.000	superfamily_FYVE/PHD zinc finger	superfamily_FYVE/PHD zinc finger,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors	
C3orf63	23272	genome.wustl.edu	37	3	56716828	56716828	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	56716828	56716828	G	A	SNP	C3orf63	NM_001112736	human	genbank	57_37b	-1	validated	silent	c.207	p.L69	0.389	NULL	NULL	-	no_errors	
CADPS	8618	genome.wustl.edu	37	3	62535703	62535703	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	62535703	62535703	A	C	SNP	CADPS	NM_003716	human	genbank	57_37b	-1	reviewed	missense	c.1841	p.L614R	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	HMMPfam_C2,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_DUF1041	-	no_errors	
CEP97	79598	genome.wustl.edu	37	3	101477254	101477254	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	101477254	101477254	G	A	SNP	CEP97	NM_024548	human	genbank	57_37b	+1	provisional	missense	c.1804	p.D602N	0.982	NULL	superfamily_L domain-like,HMMSmart_SM00365,HMMPfam_LRR_1,HMMPfam_IQ	-	no_errors	
CHRD	8646	genome.wustl.edu	37	3	184104637	184104637	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	184104637	184104637	G	A	SNP	CHRD	NM_003741	human	genbank	57_37b	+1	reviewed	missense	c.2201	p.R734Q	1.000	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1	HMMPfam_VWC,HMMSmart_SM00214,HMMPfam_CHRD,HMMSmart_SM00754,PatternScan_VWFC_1	-	no_errors	
CPNE3	8895	genome.wustl.edu	37	8	87568396	87568396	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	87568396	87568396	A	G	SNP	CPNE3	NM_003909	human	genbank	57_37b	+1	reviewed	missense	c.1321	p.I441V	0.998	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_Copine	HMMSmart_C2,HMMPfam_C2,superfamily_C2_CaLB,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_Copine	-	no_errors	
CPNE8	144402	genome.wustl.edu	37	12	39087515	39087515	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	39087515	39087515	G	C	SNP	CPNE8	NM_153634	human	genbank	57_37b	-1	reviewed	missense	c.1087	p.L363V	0.998	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_Copine	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_Copine	-	no_errors	
CYTH1	9267	genome.wustl.edu	37	17	76676295	76676297	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	76676295	76676297	CTT	-	DEL	CYTH1	NM_004762	human	genbank	57_37b	-1	reviewed	in_frame_del	c.1095_1093	p.K365in_frame_del	1.000:1.000:1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_Sec7 domain,HMMPfam_Sec7,HMMSmart_SM00222,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	(deletion:cds_exon[76676272,76676426])	no_errors	
ENSG00000247682	0	genome.wustl.edu	37	7	5553307	5553307	+	RNA	SNP	T	T	C	rs61740906	byCluster;by1000genomes	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	5553307	5553307	T	C	SNP	ENSG00000247682	ENST00000499067	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.685	-	-	-		
EPB41L4A	64097	genome.wustl.edu	37	5	111595650	111595650	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	111595650	111595650	T	-	DEL	EPB41L4A	NM_022140	human	genbank	57_37b	-1	validated	frame_shift_del	c.669	p.G224fs	0.997	superfamily_PH domain-like,HMMPfam_FERM_C	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA	(deletion:cds_exon[111595588,111595676])	no_errors	
FGFR1	2260	genome.wustl.edu	37	8	38271457	38271457	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	38271457	38271457	G	A	SNP	FGFR1	NM_023110	human	genbank	57_37b	-1	reviewed	silent	c.2271	p.I757	0.027	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
FLNB	2317	genome.wustl.edu	37	3	58134535	58134535	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	58134535	58134535	G	A	SNP	FLNB	NM_001457	human	genbank	57_37b	+1	reviewed	missense	c.6047	p.R2016Q	0.998	HMMPfam_Filamin,superfamily_Ig_E-set,HMMSmart_IG_FLMN	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Ig_E-set,HMMPfam_Filamin,HMMSmart_IG_FLMN	-	no_errors	
GGNBP2	79893	genome.wustl.edu	37	17	34937779	34937779	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	34937779	34937779	C	T	SNP	GGNBP2	NM_024835	human	genbank	57_37b	+1	validated	silent	c.1026	p.T342	1.000	NULL	NULL	-	no_errors	
GOLGA4	2803	genome.wustl.edu	37	3	37356982	37356982	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	37356982	37356982	G	A	SNP	GOLGA4	NM_002078	human	genbank	57_37b	+1	reviewed	missense	c.1306	p.E436K	1.000	NULL	superfamily_Prefoldin,PatternScan_PHOSPHOPANTETHEINE,HMMPfam_GRIP,HMMSmart_SM00755,superfamily_GRIP domain	-	no_errors	
HFE	3077	genome.wustl.edu	37	6	26092916	26092916	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26092916	26092916	C	T	SNP	HFE	NM_000410	human	genbank	57_37b	+1	reviewed	missense	c.620	p.P207L	0.395	superfamily_Immunoglobulin	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMSmart_SM00407,HMMPfam_C1-set,PatternScan_IG_MHC	-	no_errors	
HP1BP3	50809	genome.wustl.edu	37	1	21097424	21097424	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	21097424	21097424	T	A	SNP	HP1BP3	NM_016287	human	genbank	57_37b	-1	validated	missense	c.653	p.Q218L	1.000	"superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00526,HMMPfam_Linker_histone"	"superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00526,HMMPfam_Linker_histone"	-	no_errors	
ITGA10	8515	genome.wustl.edu	37	1	145539030	145539030	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	145539030	145539030	C	T	SNP	ITGA10	NM_003637	human	genbank	57_37b	+1	reviewed	silent	c.2970	p.L990	0.992	HMMPfam_Integrin_alpha2,superfamily_Integrin domains	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains	-	no_errors	
LOC100287512	0	genome.wustl.edu	37	3	15183060	15183060	+	RNA	SNP	T	T	C	rs71308132	byCluster;byFrequency	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	15183060	15183060	T	C	SNP	LOC100287512	XR_078279	human	genbank	57_37b	+1	model	rna	NULL	NULL	1.000	-	-	-		
LOC100288413	0	genome.wustl.edu	37	4	53610409	53610409	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	53610409	53610409	C	G	SNP	LOC100288413	XM_002342451	human	genbank	57_37b	-1	model	missense	c.1279	p.D427H	0.000	NULL	NULL	-	no_errors	
LOC148709	148709	genome.wustl.edu	37	1	202843127	202843127	+	RNA	SNP	C	T	T	rs11590469	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	202843127	202843127	C	T	SNP	LOC148709	NR_002929	human	genbank	57_37b	+1	validated	rna	NULL	NULL	1.000	-	-	-		
LOC643446	643446	genome.wustl.edu	37	4	11374478	11374478	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	11374478	11374478	C	T	SNP	LOC643446	XM_001130637	human	genbank	57_37b	+1	model	missense	c.880	p.R294C	0.968	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors	
LOC646698	646698	genome.wustl.edu	37	19	56755692	56755692	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56755692	56755692	T	A	SNP	LOC646698	XM_001725568	human	genbank	57_37b	+1	model	missense	c.272	p.I91N	0.024	HMMPfam_SCAN,HMMSmart_SM00431	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
LRP4	4038	genome.wustl.edu	37	11	46896381	46896381	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	46896381	46896381	T	C	SNP	LRP4	NM_002334	human	genbank	57_37b	-1	validated	missense	c.4199	p.Y1400C	1.000	superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	-	no_errors	
LRRTM1	347730	genome.wustl.edu	37	2	80530819	80530819	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	80530819	80530819	C	A	SNP	LRRTM1	NM_178839	human	genbank	57_37b	-1	validated	silent	c.126	p.L42	1.000	HMMSmart_LRRNT,superfamily_SSF52058	HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP	-	no_errors	
MYO15A	51168	genome.wustl.edu	37	17	18065989	18065989	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18065989	18065989	T	C	SNP	MYO15A	NM_016239	human	genbank	57_37b	+1	reviewed	missense	c.9608	p.M3203T	1.000	HMMSmart_SM00139,HMMPfam_MyTH4	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMSmart_SM00139,HMMPfam_MyTH4,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M	-	no_errors	
NLRP2	55655	genome.wustl.edu	37	19	55494011	55494011	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55494011	55494011	C	T	SNP	NLRP2	NM_017852	human	genbank	57_37b	+1	provisional	silent	c.945	p.P315	0.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368	-	no_errors	
PCDHA2	56146	genome.wustl.edu	37	5	140176351	140176351	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140176351	140176351	C	T	SNP	PCDHA2	NM_018905	human	genbank	57_37b	+1	reviewed	missense	c.1802	p.S601L	0.121	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PIK3R1	5295	genome.wustl.edu	37	5	67591111	67591112	+	In_Frame_Ins	INS	-	-	GAC	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	67591111	67591112	-	GAC	INS	PIK3R1	NM_181523	human	genbank	57_37b	+1	reviewed	in_frame_ins	c.1704_1705	p.569in_frame_insD	0.152:1.000	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors	
PLCD4	84812	genome.wustl.edu	37	2	219492900	219492900	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	219492900	219492900	C	T	SNP	PLCD4	NM_032726	human	genbank	57_37b	+1	provisional	silent	c.921	p.T307	0.990	HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors	
PPP4R2	151987	genome.wustl.edu	37	3	73096423	73096423	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	73096423	73096423	G	C	SNP	PPP4R2	NM_174907	human	genbank	57_37b	+1	provisional	missense	c.203	p.R68T	1.000	HMMPfam_PPP4R2	HMMPfam_PPP4R2	-	no_errors	
PROM2	150696	genome.wustl.edu	37	2	95944749	95944749	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	95944749	95944749	G	A	SNP	PROM2	NM_144707	human	genbank	57_37b	+1	reviewed	silent	c.1131	p.V377	0.387	HMMPfam_Prominin	HMMPfam_Prominin,PatternScan_PA2_HIS	-	no_errors	
RAP1GAP	5909	genome.wustl.edu	37	1	21928254	21928254	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	21928254	21928254	G	A	SNP	RAP1GAP	NM_001145658	human	genbank	57_37b	-1	validated	silent	c.1767	p.S589	0.998	NULL	HMMPfam_GoLoco,HMMSmart_SM00390,superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP	-	no_errors	
ROS1	6098	genome.wustl.edu	37	6	117710620	117710620	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	117710620	117710620	G	A	SNP	ROS1	NM_002944	human	genbank	57_37b	-1	reviewed	missense	c.1652	p.S551F	0.014	superfamily_SSF63825	HMMSmart_FN3,HMMPfam_fn3,superfamily_FN_III-like,superfamily_SSF63825,HMMSmart_LY,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	-	no_errors	
SEMA6A	57556	genome.wustl.edu	37	5	115823840	115823842	+	In_Frame_Del	DEL	GAA	GAA	-	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	115823840	115823842	GAA	-	DEL	SEMA6A	NM_020796	human	genbank	57_37b	-1	validated	in_frame_del	c.708_706	p.F236in_frame_del	1.000:1.000:1.000	superfamily_Sema domain,HMMSmart_SM00630,HMMPfam_Sema	superfamily_Sema domain,HMMSmart_SM00630,HMMPfam_Sema,HMMPfam_PSI,superfamily_Plexin repeat,HMMSmart_SM00423	(deletion:cds_exon[115823804,115823892])	no_errors	
SETD1A	9739	genome.wustl.edu	37	16	30977152	30977152	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	30977152	30977152	T	A	SNP	SETD1A	NM_014712	human	genbank	57_37b	+1	provisional	silent	c.1950	p.P650	1.000	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SSF82199,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET	-	no_errors	
SLC22A25	387601	genome.wustl.edu	37	11	62996780	62996780	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62996780	62996780	G	A	SNP	SLC22A25	NM_199352	human	genbank	57_37b	-1	validated	silent	c.345	p.P115	1.000	NULL	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors	
SLC27A3	11000	genome.wustl.edu	37	1	153747796	153747796	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	153747796	153747796	T	C	SNP	SLC27A3	ENST00000271857	human	ensembl	57_37b	+1	known	silent	c.207	p.A69	0.478	NULL	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors	
SOX9	6662	genome.wustl.edu	37	17	70117908	70117908	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	70117908	70117908	C	T	SNP	SOX9	NM_000346	human	genbank	57_37b	+1	reviewed	nonsense	c.376	p.Q126*	1.000	superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	-	no_errors	
SPTA1	6708	genome.wustl.edu	37	1	158644209	158644209	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158644209	158644209	G	A	SNP	SPTA1	NM_003126	human	genbank	57_37b	-1	reviewed	silent	c.1260	p.D420	0.999	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_EF-hand,HMMPfam_efhand_Ca_insen	-	no_errors	
SYS1	90196	genome.wustl.edu	37	20	43992225	43992225	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	43992225	43992225	G	T	SNP	SYS1	NM_033542	human	genbank	57_37b	+1	validated	missense	c.54	p.Q18H	1.000	HMMPfam_SYS1	HMMPfam_SYS1	-	no_errors	
TBL3	10607	genome.wustl.edu	37	16	2025604	2025604	+	Missense_Mutation	SNP	G	G	C	rs8052713	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2025604	2025604	G	C	SNP	TBL3	NM_006453	human	genbank	57_37b	+1	reviewed	missense	c.880	p.E294Q	1.000	superfamily_WD40_like,HMMSmart_WD40	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_Utp13	-		
TIMM17A	10440	genome.wustl.edu	37	1	201924671	201924671	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	201924671	201924671	G	C	SNP	TIMM17A	NM_006335	human	genbank	57_37b	+1	validated	missense	c.17	p.R6P	0.223	HMMPfam_Tim17	HMMPfam_Tim17	-	no_errors	
TNK2	10188	genome.wustl.edu	37	3	195594805	195594805	+	Silent	SNP	A	A	G	rs1056749	byCluster;byFrequency;by1000genomes	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	195594805	195594805	A	G	SNP	TNK2	NM_001010938	human	genbank	57_37b	-1	reviewed	silent	c.2553	p.A851	0.055	NULL	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,HMMPfam_GTPase_binding	-		
TOPBP1	11073	genome.wustl.edu	37	3	133337228	133337228	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	133337228	133337228	C	G	SNP	TOPBP1	NM_007027	human	genbank	57_37b	-1	reviewed	missense	c.3421	p.E1141Q	1.000	NULL	superfamily_BRCT domain,HMMPfam_BRCT,HMMSmart_SM00292,superfamily_Uteroglobin-like	-	no_errors	
TTLL7	79739	genome.wustl.edu	37	1	84408343	84408343	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	84408343	84408343	C	T	SNP	TTLL7	NM_024686	human	genbank	57_37b	-1	validated	missense	c.526	p.G176S	1.000	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors	
TYR	7299	genome.wustl.edu	37	11	88911241	88911241	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	88911241	88911241	C	G	SNP	TYR	NM_000372	human	genbank	57_37b	+1	reviewed	missense	c.120	p.S40R	0.000	NULL	superfamily_Di-copper centre-containing domain,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMPfam_Tyrosinase,PatternScan_TYROSINASE_1,PatternScan_TYROSINASE_2	-	no_errors	
USP27X	389856	genome.wustl.edu	37	X	49645295	49645295	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	49645295	49645295	C	T	SNP	USP27X	NM_001145073	human	genbank	57_37b	+1	provisional	silent	c.385	p.L129	0.996	superfamily_SSF54001,HMMPfam_UCH	superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors	
VPS26B	112936	genome.wustl.edu	37	11	134114938	134114938	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	134114938	134114938	G	C	SNP	VPS26B	NM_052875	human	genbank	57_37b	+1	validated	silent	c.828	p.L276	1.000	HMMPfam_Vps26	HMMPfam_Vps26	-	no_errors	
VWDE	221806	genome.wustl.edu	37	7	12401033	12401033	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	12401033	12401033	C	A	SNP	VWDE	NM_001135924	human	genbank	57_37b	-1	provisional	missense	c.3013	p.D1005Y	0.128	NULL	HMMSmart_SM00216,HMMPfam_VWD,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Growth factor receptor domain,HMMPfam_EGF_2	-	no_errors	
ZNF415	55786	genome.wustl.edu	37	19	53611669	53611669	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53611669	53611669	T	C	SNP	ZNF415	NM_018355	human	genbank	57_37b	-1	validated	silent	c.1629	p.Q543	0.007	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF569	148266	genome.wustl.edu	37	19	37904255	37904255	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	37904255	37904255	C	G	SNP	ZNF569	NM_152484	human	genbank	57_37b	-1	validated	missense	c.1305	p.E435D	1.000	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF90	7643	genome.wustl.edu	37	19	20229605	20229605	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	20229605	20229605	A	G	SNP	ZNF90	NM_007138	human	genbank	57_37b	+1	validated	missense	c.1242	p.I414M	0.002	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
