Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AP1M2	10053	genome.wustl.edu	37	19	10690471	10690471	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10690471	10690471	C	A	SNP	AP1M2	NM_005498	human	genbank	57_37b	-1	reviewed	missense	c.737	p.R246L	1.000	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	superfamily_SNARE-like,PatternScan_CLAT_ADAPTOR_M_1,HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,PatternScan_CLAT_ADAPTOR_M_2	-	no_errors	
CDHR1	0	genome.wustl.edu	37	10	85965678	85965678	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	85965678	85965678	G	A	SNP	CDHR1	NM_033100	human	genbank	57_37b	+1	reviewed	missense	c.958	p.V320I	0.956	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	-	no_errors	
CNGA2	1260	genome.wustl.edu	37	X	150911669	150911669	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	150911669	150911669	G	A	SNP	CNGA2	NM_005140	human	genbank	57_37b	+1	reviewed	missense	c.694	p.D232N	0.997	superfamily_SSF81324,HMMPfam_Ion_trans	superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2	-	no_errors	
ENO1	2023	genome.wustl.edu	37	1	8928049	8928049	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	8928049	8928049	T	G	SNP	ENO1	NM_001428	human	genbank	57_37b	-1	reviewed	missense	c.308	p.K103T	1.000	HMMPfam_Enolase_N,superfamily_Enolase N-terminal domain-like	HMMPfam_Enolase_N,superfamily_Enolase N-terminal domain-like,superfamily_Enolase C-terminal domain-like,HMMPfam_Enolase_C,PatternScan_ENOLASE	-	no_errors	
ENSG00000246235	0	genome.wustl.edu	37	11	66384143	66384143	+	RNA	SNP	C	C	A	rs76192789	byCluster;byFrequency;by1000genomes	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66384143	66384143	C	A	SNP	ENSG00000246235	ENST00000500635	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.988	-	-	-		
FASN	2194	genome.wustl.edu	37	17	80042925	80042925	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	80042925	80042925	G	A	SNP	FASN	NM_004104	human	genbank	57_37b	-1	reviewed	silent	c.4395	p.G1465	0.131	NULL	superfamily_Thiolase-like,HMMPfam_ketoacyl-synt,PatternScan_B_KETOACYL_SYNTHASE,HMMPfam_Ketoacyl-synt_C,superfamily_FabD/lysophospholipase-like,HMMPfam_Acyl_transf_1,superfamily_Probable ACP-binding domain of malonyl-CoA ACP transacylase,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_12,superfamily_GroES-like,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N,HMMPfam_adh_short,superfamily_ACP-like,HMMPfam_PP-binding,PatternScan_PHOSPHOPANTETHEINE,superfamily_alpha/beta-Hydrolases,HMMPfam_Thioesterase	-	no_errors	
FBXO44	93611	genome.wustl.edu	37	1	11718651	11718651	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	11718651	11718651	G	A	SNP	FBXO44	NM_001014765	human	genbank	57_37b	+1	reviewed	missense	c.454	p.D152N	1.000	HMMPfam_FBA,superfamily_Galactose-binding domain-like	superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,HMMPfam_FBA,superfamily_Galactose-binding domain-like	-	no_errors	
FLJ43826	342666	genome.wustl.edu	37	17	37185764	37185764	+	RNA	SNP	A	A	G	rs11868358	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	37185764	37185764	A	G	SNP	FLJ43826	XR_040620	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.000	-	-	-		
GTSF1	121355	genome.wustl.edu	37	12	54857054	54857054	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	54857054	54857054	C	T	SNP	GTSF1	NM_144594	human	genbank	57_37b	-1	validated	missense	c.145	p.A49T	1.000	HMMPfam_UPF0224	HMMPfam_UPF0224	-	no_errors	
GUCY2C	2984	genome.wustl.edu	37	12	14835986	14835986	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	14835986	14835986	C	T	SNP	GUCY2C	NM_004963	human	genbank	57_37b	-1	validated	missense	c.601	p.D201N	1.000	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors	
H2AFY2	55506	genome.wustl.edu	37	10	71849864	71849864	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	71849864	71849864	C	A	SNP	H2AFY2	NM_018649	human	genbank	57_37b	+1	validated	missense	c.221	p.A74D	1.000	HMMSmart_H2A,superfamily_Histone-fold,HMMPfam_Histone	HMMSmart_H2A,superfamily_Histone-fold,HMMPfam_Histone,superfamily_SSF52949,HMMPfam_Macro	-	no_errors	
KRBA1	84626	genome.wustl.edu	37	7	149430367	149430367	+	Missense_Mutation	SNP	C	C	T	rs73725583	byCluster;byFrequency;by1000genomes	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	149430367	149430367	C	T	SNP	KRBA1	ENST00000255992	human	ensembl	57_37b	+1	known	missense	c.2321	p.P774L	0.002	NULL	NULL	-		
LOC100134713	0	genome.wustl.edu	37	7	140396472	140396472	+	RNA	SNP	C	C	G	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	140396472	140396472	C	G	SNP	LOC100134713	NR_024454	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.017	-	-	-	no_errors	
LOC728498	728498	genome.wustl.edu	37	15	30905821	30905821	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	30905821	30905821	C	T	SNP	LOC728498	XM_002343357	human	genbank	57_37b	+1	model	silent	c.1272	p.G424	0.987	NULL	NULL	-	no_errors	
NACAD	23148	genome.wustl.edu	37	7	45124668	45124668	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	45124668	45124668	T	C	SNP	NACAD	ENST00000258775	human	ensembl	57_37b	-1	known	missense	c.1111	p.T371A	1.000	NULL	HMMPfam_NAC	-	no_errors	
OSBPL8	114882	genome.wustl.edu	37	12	76765227	76765227	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	76765227	76765227	C	T	SNP	OSBPL8	NM_020841	human	genbank	57_37b	-1	reviewed	splice_site	c.2054+1	e18+1	1.000	-	-	-	no_errors	
PEG3	5178	genome.wustl.edu	37	19	57334192	57334192	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	57334192	57334192	C	A	SNP	PEG3	NM_006210	human	genbank	57_37b	-1	reviewed	missense	c.494	p.W165L	0.278	NULL	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
PGRMC1	10857	genome.wustl.edu	37	X	118377191	118377191	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	118377191	118377191	G	A	SNP	PGRMC1	NM_006667	human	genbank	57_37b	+1	validated	missense	c.562	p.D188N	1.000	NULL	superfamily_Cytochrome b5-like heme/steroid binding domain,HMMPfam_Cyt-b5	-	no_errors	
SEPT9	10801	genome.wustl.edu	37	17	75471846	75471846	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	75471846	75471846	C	T	SNP	SEPT9	NM_001113495	human	genbank	57_37b	+1	reviewed	silent	c.246	p.H82	0.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Septin	-	no_errors	
TEX13A	56157	genome.wustl.edu	37	X	104464674	104464674	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	104464674	104464674	G	A	SNP	TEX13A	ENST00000413579	human	ensembl	57_37b	-1	known	silent	c.408	p.L136	0.000	NULL	superfamily_SSF90209,HMMPfam_zf-RanBP,HMMSmart_ZnF_RBZ,PatternScan_ZF_RANBP2_1	-	no_errors	
THOP1	7064	genome.wustl.edu	37	19	2811608	2811608	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	2811608	2811608	C	T	SNP	THOP1	NM_003249	human	genbank	57_37b	+1	provisional	missense	c.1784	p.P595L	0.998	superfamily_SSF55486,HMMPfam_Peptidase_M3	superfamily_SSF55486,HMMPfam_Peptidase_M3,PatternScan_ZINC_PROTEASE	-	no_errors	
TNFRSF11A	8792	genome.wustl.edu	37	18	60021761	60021761	+	Missense_Mutation	SNP	C	C	T	rs35211496	byCluster;byFrequency;by1000genomes	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	60021761	60021761	C	T	SNP	TNFRSF11A	NM_003839	human	genbank	57_37b	+1	reviewed	missense	c.421	p.H141Y	0.989	superfamily_SSF57586,HMMSmart_TNFR	superfamily_SSF57586,HMMPfam_TNFR_c6,HMMSmart_TNFR,PatternScan_TNFR_NGFR_1	-		
TRIM67	440730	genome.wustl.edu	37	1	231298898	231298898	+	Silent	SNP	C	C	A	rs61750990	byCluster;by1000genomes	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	231298898	231298898	C	A	SNP	TRIM67	NM_001004342	human	genbank	57_37b	+1	validated	silent	c.183	p.A61	0.952	superfamily_RING/U-box,HMMSmart_SM00184	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMSmart_SM00336,HMMPfam_zf-B_box,superfamily_B-box zinc-binding domain,HMMSmart_SM00502,HMMPfam_fn3,superfamily_Fibronectin type III,HMMSmart_SM00060,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00449,HMMPfam_SPRY	-		
UGT2A3	79799	genome.wustl.edu	37	4	69817413	69817413	+	Silent	SNP	G	G	A	rs79579581	byFrequency;by1000genomes	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	69817413	69817413	G	A	SNP	UGT2A3	NM_024743	human	genbank	57_37b	-1	validated	silent	c.66	p.F22	0.000	PatternScan_HMA_1	PatternScan_HMA_1,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-		
VASN	114990	genome.wustl.edu	37	16	4432029	4432029	+	Missense_Mutation	SNP	A	A	C	rs3810818	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A1EW-01A-11D-A135-09	TCGA-BH-A1EW-11B-33D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	4432029	4432029	A	C	SNP	VASN	NM_138440	human	genbank	57_37b	+1	validated	missense	c.1151	p.E384A	0.460	NULL	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3	-		
